OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Applied Microbiology is 16. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-01-01 to 2026-01-01.)

Article	Citations
	354
	226
Withdrawn: Abundance, community structure and diversity of nitrifying bacterial enrichments from low and high saline brackishwater environments	222
Issue Information	137
Exploring Bacillus thuringiensis as a model for endospore adhesion and its potential to investigate adhesins in Pasteuria penetrans	118
Genomic evidence for stability of the Bacillus Calmette-Guérin (BCG) vaccine strain (Pasteur 1173P2) from different batches in Iran	107
Prevalence and conservation of ebp genes in Enterococcus faecalis originated from animals	80
A comparative study of in-vitro and in-silico anti-candidal activity and GC–MS profiles of snow mountain garlic vs. normal garlic	79
Enhancement of Acinetobacter baumannii biofilm growth by cephem antibiotics via enrichment of protein and extracellular DNA in the biofilm matrices	78
Selection of Debaryomyces hansenii isolates as starters in meat products based on phenotypic virulence factors, tolerance to abiotic stress conditions and aroma generation	72
Effect of nutritional and environmental conditions on biofilm formation of avian pathogenic Escherichia coli	71
Harnessing rhizobacteria to fulfil inter-linked nutrient dependency on soil and alleviate stresses in plants	63
Thermal fogging with disinfectants and antifreezes enables effective industrial disinfection in subzero cold-chain environment	60
Dynamics of fungal and bacterial microbiome associated with green-mould contaminated sawdust substrate of Pleurotus pulmonarius (grey oyster mushroom)	59
Could Bacillus biofilms enhance the effectivity of biocontrol strategies in the phyllosphere?	58
Functional fermented meat products with probiotics—A review	56
Host range and virulence diversity of Pectobacterium carotovorum subsp. brasiliense strain RDKLR infecting radish in India, and development of a LAMP-based diagnostics	55
Epidemiology of major entero-pathogenic viruses and genetic characterization of Group A rotaviruses among children (≤5 years) with acute gastroenteritis in eastern India, 2018–2020	54
	48
Issue Information	48
	46
Metabolomic analysis of sheath blight disease of rice (Oryza sativa L.) induced by Rhizoctonia solani phytotoxin	44
Effect of thermotherapy, Leifsonia xyli subsp. xyli titres, sugarcane genotype and diagnostic techniques on ratoon stunt control in Brazil	42
Novel pulsed infrared radiation: Effect on microbial, chemical and sensory properties of saffron (Crocus sativus L.)	40
Issue Information	40

Antifungal activity of 2-chloro-N-phenylacetamide, docking and molecular dynamics studies against clinical isolates of Candida tropicalis and Candida parapsilosis	39
Metabolite profiling reveals overexpression of the global regulator, MoLAEA leads to increased synthesis of metabolites in Magnaporthe oryzae	39
Antimicrobial resistance—Do we share more than companionship with our dogs?	39
The potential of Bacillus subtilis and phosphorus in improving the growth of wheat under chromium stress	38
A carvacrol-based product reduces Campylobacter jejuni load and alters microbiota composition in the caeca of chickens	38
A SARS-CoV-2 oral vaccine development strategy based on the attenuated Salmonella type III secretion system	37
Immunomodulatory and ameliorative effects of probiotic in combination with diclazuril on broilers under coccidia infection	36
Beneficial effects of fermented barley extracts on inflammatory status and gut microbiota in high-fat diet-induced obese rats	35
The probiotic potential of Lactobacillus plantarum strain RW1 isolated from canine faeces	35
Dose–response analysis of Bacillus thuringiensis HD-1 cry- spore reduction on surfaces using formaldehyde with pre-germination	34
Fermentation of chickpea flour with selected lactic acid bacteria for improving its nutritional and functional properties	34
Using fermentation waste of ethanol-producing yeast for bacterial riboflavin production and recycling of spent bacterial mass for enhancing the growth of oily plants	34
Probiotic properties of yeasts in traditional fermented foods and beverages	34
The inactivation efficacy of plasma-activated acetic acid against Salmonella Typhimurium cells and biofilm	32
Container material dictates stability of bacteriophage suspensions: Light scattering and infectivity measurements reveal mechanisms of infectious titre decay	32
Analysis of bacterial diversity and genetic evolution of Lacticaseibacillus paracasei isolates in fermentation pit mud	32
Issue Information	32
Antimicrobial effects of automobile screen washes against Legionella pneumophila	32
Whole-genome sequencing links Clostridium (Clostridioides) difficile in a single hospital to diverse environmental sources in the community	31
A survey of fermentation parameters, bacterial community compositions and their metabolic pathways during the ensiling of sorghum	30
Effect of different dosages of sodium butyrate and niacin on growth, faecal microbiota and Vitamin B metabolism in weaned piglets	30
Minding the matrix: The importance of inoculum suspensions on finger transfer efficiency of virus	30
Comparison of bacterial diversity, root exudates and soil enzymatic activities in the rhizosphere of AVP1-transgenic and nontransgenic wheat (Triticum aestivum L.)	29
Plant endophytic bacteria: A potential resource pool of electroactive micro-organisms	29
The NDT80-like transcription factor CmNdt80a affects the conidial formation and germination, mycoparasitism, and cell wall integrity of Coniothyrium minitans	29
Rapid and visual detection of Staphylococcus aureus in milk using a recombinase polymerase amplification-lateral flow assay combined with immunomagnetic separation	29
Lactobacilli reduce recurrences of vaginal candidiasis in pregnant women: a randomized, double-blind, placebo-controlled study	29
Whole genome sequencing reveals antimicrobial resistance determinants (AMR genes) of Salmonella enterica recovered from raw chicken and ready-to-eat leaves imported into England between 2014 and 2019	28
Metabolite and transcriptome analyses revealed the modulation of fructo-oligosaccharide on ileum metabolism of Taiping chickens	28
Evaluating the fermentation quality and bacterial community of high-moisture whole-plant quinoa silage ensiled with different additives	28
In vitro Inhibition of respiratory pathogens by lactobacillus and alpha haemolytic streptococci from Aboriginal and Torres Strait Islander children	27
Antibacterial activity and mechanism of ginger extract against Ralstonia solanacearum	27
Special Issue ‘One Health meets Omics: The way forward to investigate zoonosis’	27
Layers, broiler chickens and their F1 cross develop distinctly different caecal microbial communities when hatched and reared together	27
Antifungal potential of Azotobacter species and its metabolites against Fusarium verticillioides and biodegradation of fumonisin	27
A methodological review on the characterization of microalgal biofilm and its extracellular polymeric substances	26
Two novel screened microbial consortia and their application in combination with Lactobacillus plantarum for improving fermentation quality of high-moisture alfalfa	26
Biocontrol potential of Burkholderia sp. BV6 against the rice blast fungus Magnaporthe oryzae	26
An assessment of three methods for extracting bacterial DNA from beach sand	26
Differences in biofilm formation of Salmonella serovars on two surfaces under two temperature conditions	26
Characterization of a novel, biofilm dispersing, lytic bacteriophage against drug-resistant Enterobacter cloacae	26
Using γ-ray irradiation and epiphytic microbiota inoculation to separate the effects of chemical and microbial factors on fermentation quality and bacterial community of ensiled Pennisetum giganteum	26
Purification and characterization of a robust thermostable protease isolated from Bacillus subtilis strain HR02 as an extremozyme	26
Characterization of oxaliplatin removal by multispecies bacterial populations in moving bed biofilm and suspended-biomass reactors	26
Rhizospheric and endophytic Pseudomonas aeruginosa in edible vegetable plants share molecular and metabolic traits with clinical isolates	26
Identification of antibacterial metabolites produced by a marine bacterium Halobacillus marinus HMALI004	26
A commercial SnF2 toothpaste formulation reduces simulated human plaque biofilm in a dynamic typodont model	25
Differing kinetics of anti-spike protein IgGs and neutralizing antibodies against SARS-CoV-2 after Comirnaty (BNT162b2) immunization	25
The following articles for this Special Issue were published in different Issues	25
Infrared thermography can detect previsual bacterial growth in a laboratory setting via metabolic heat detection	24

Comparative survival of environmental and clinical Mycobacterium abscessus isolates in a variety of diverse host cells	24
Predictive growth kinetic parameters and modelled probabilities of deoxynivalenol production by Fusarium graminearum on wheat during simulated storing conditions	24
A comparative genomics approach for identifying genetic factors in Escherichia coli isolates associated with bovine diseases	24
High-copy genome integration and stable production of p-coumaric acid via a POT1-mediated strategy in Saccharomyces cerevisiae	24
Heterologous expression of a cryptic gene cluster from a marine proteobacterium Thalassomonas actiniarum affords new lanthipeptides thalassomonasins A and B	24
Interactive relationship between Trp metabolites and gut microbiota: The impact on human pathology of disease	23
Effects of supplementing with Humulus scandens on the growth performance and gut microbiota in piglets	23
Potential hazards associated with the consumption of Scombridae fish: Infection and toxicity from raw material and processing	23
Karlodinium veneficum: Growth optimization, metabolite characterization and biotechnological potential survey	23
Effects of water activity, ammonia and Corynebacterium urealyticum on the survival of Salmonella Typhimurium in sterile poultry litter	22
Rapid detoxification of Jatropha curcas cake by fermentation with a combination of three microbial strains and characterization of their metabolic profiles	22
Genomic diversity, virulence and source of Campylobacter jejuni contamination in Irish poultry slaughterhouses by whole genome sequencing	22
Identification of spoilage microflora in draught beer using culture-dependent methods	22
Biosorption of lead ions from aqueous solution by Clostridium tyrobutyricum immobilized in macroporous Ca-alginate-lignin beads	22
RETRACTED: Guaiacol augments quorum quenching potential of ciprofloxacin against Pseudomonas aeruginosa	22
Anti-inflammatory potential of Lactobacillus reuteri LM1071 via eicosanoid regulation in LPS-stimulated RAW264.7 cells	21
Evaluation of environmental conditions as a decontamination approach for SARS-CoV-2 when applied to common library, archive and museum-related materials	21
Phytolectin conjugated positively charged fatty acid amide impairs virulence factors and inhibits cross-kingdom biofilm formation of Candida albicans and uropathogenic Escherichia coli	21
Management of Phytophthora parasitica causing gummosis in citrus using biogenic copper oxide nanoparticles	21
Application of pulsed light technology for fruits and vegetables disinfection: A review	20
Distinct dynamics of Vibrio parahaemolyticus populations in two farming models	20
Issue Information	20
Rhizosphere bacteria induce programmed cell death defence genes and signalling in chilli pepper	20
Identifying more targeted antimicrobials active against selected bacterial phytopathogens	20
Bacteriophage-antibiotic combination therapy for multidrug-resistant Pseudomonas aeruginosa: In vitro synergy testing	20
Characterization of cinnamon essential oil and its application in Malva sylvestris seed mucilage edible coating to the enhancement of the microbiological, physicochemical and sensory properties of lam	20
Assessment of humoral immune response to two mRNA SARS-CoV-2 vaccines (Moderna and Pfizer) in healthcare workers fully vaccinated with and without a history of previous infection	20
Characterization of bacterial communities in Coregonus peled fillets during chilled storage and interactions between selected bacterial strains	19
Bacterial levels and diversity in kitchen sponges and dishwashing brushes used by consumers	19
Inhibitory effects of atmospheric dielectric barrier discharge plasma against Bacillus cereus and Staphylococcus aureus on Gwamegi (semi-dried Cololabis saira)	19
Utilization of palm oil mill effluent as a novel substrate for the production of antifungal compounds by Streptomyces philanthi RM-1-138 and evaluation of its efficacy in suppression of three strains	19
Imaging and plate counting to quantify the effect of an antimicrobial: A case study of a photo-activated chlorine dioxide treatment	19
Biochemical features and early adhesion of marine Candida parapsilosis strains on high-density polyethylene	18
Protective effects of Lacticaseibacillus rhamnosus Hao9 on dextran sulphate sodium-induced ulcerative colitis in mice	18
Effects of probiotic Lactiplantibacillus plantarum IMC 510 supplementation on metabolic factors in otherwise healthy overweight and obese individuals	18
Oxidative lesions and post-treatment viability attenuation of listeria monocytogenes triggered by atmospheric non-thermal plasma	18
Comparison of Monkeypox virus genomes from the 2017 Nigeria outbreak and the 2022 outbreak	18
Iron and methyl jasmonate increase high-value PUFA production by elevating the expression of desaturase genes in marine microalga Isochrysis sp.,	18
Antifungal action of the combination of ferulic acid and ultraviolet-A irradiation against Saccharomyces cerevisiae	18
Redesigned pMAL expression vector for easy and fast purification of active native antimicrobial peptides	17
Bactericidal effects of high-energy visible light on common otitis media pathogens	17
High-throughput assay for effect screening of amphotericin B and bioactive components on filamentous Candida albicans	17
Norovirus attribution study: Detection of norovirus from the commercial food preparation environment in outbreak and non-outbreak premises	17
Genomic characterization of high-risk Escherichia coli and Enterobacter hormaechei clones recovered from a single tertiary-care hospital in Pakistan	17
Salmonella contamination and hazard analysis in a storage facility for feed materials in Japan	17
PCR-based ORF typing of Klebsiella pneumoniae for rapid identification of global clones and transmission events	17
Biovalorization of spent Konacha tea leaves via single-culture fermentation involving wine yeasts and lactic acid bacteria	17
Bacteriophages: A weapon against mixed-species biofilms in the food processing environment	17
Integrative analyses of probiotics, pathogenic infections and host immune response highlight the importance of gut microbiota in understanding disease recovery in rainbow trout (Oncorhynchus mykiss)	17
Ceriporia lacerata HG2011 enhances P mobilization and wheat agronomic performance irrespective of P fertilization levels	17
Algicidal interaction between Paenibacillus polymyxa MEZ6 and microalgae	17
Antibacterial and antibiofilm activities of novel antimicrobial peptide DP7 against the periodontal pathogen Porphyromonas gingivalis	16
Structure and functional capacity of a benzene-mineralizing, nitrate-reducing microbial community	16
Phenotypic characterization of the Hordeum bulbosum derived leaf rust resistance genes Rph22 and Rph26 in barley	16
Testing of candidate probiotics to prevent dental caries induced by Streptococcus mutans in a mouse model	16
Characterization of three novel DyP-type peroxidases from Streptomyces chartreusis NRRL 3882	16
Impact of microecological agents on water environment restoration and microbial community structures of trench system in a Baiyangdian wetland ecosystem	16
Characterization of nitrilases from Variovorax boronicumulans that functions in insecticide flonicamid degradation and β-cyano-L-alanine detoxification	16
Infection and antibiotic treatment have prolonged effects on gut microbiota, muscle and hepatic fatty acids in rainbow trout (Oncorhynchus mykiss)	16
Directional bioconversion and optimization of stevioside into rubusoside by Lelliottia sp. LST-1	16
Antistaphylococcal and antioxidant activities of bacteriocinogenic lactic acid bacteria and essential oil in goat coalho cheese	16
The combination of hexanal and geraniol in sublethal concentrations synergistically inhibits quorum sensing in Pseudomonas fluorescens—In vitro and in silico approaches	16
Ultrasound-assisted facile synthesis of Boron-Heck-coupled sclareol analogues as potential antibacterial agents against Staphylococcus aureus	16
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