OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Applied Microbiology is 14. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-09-01 to 2025-09-01.)

Article	Citations
Issue Information	316
Withdrawn: Abundance, community structure and diversity of nitrifying bacterial enrichments from low and high saline brackishwater environments	185
Host range and virulence diversity of Pectobacterium carotovorum subsp. brasiliense strain RDKLR infecting radish in India, and development of a LAMP-based diagnostics	181
	118
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Prevalence and conservation of ebp genes in Enterococcus faecalis originated from animals	95
Epidemiology of major entero-pathogenic viruses and genetic characterization of Group A rotaviruses among children (≤5 years) with acute gastroenteritis in eastern India, 2018–2020	72
Genomic evidence for stability of the Bacillus Calmette-Guérin (BCG) vaccine strain (Pasteur 1173P2) from different batches in Iran	69
Exploring Bacillus thuringiensis as a model for endospore adhesion and its potential to investigate adhesins in Pasteuria penetrans	65
Influence of climatic factors on dry flower, grey and green mould diseases of macadamia flowers in Australia	61
Enhancement of Acinetobacter baumannii biofilm growth by cephem antibiotics via enrichment of protein and extracellular DNA in the biofilm matrices	60
Could Bacillus biofilms enhance the effectivity of biocontrol strategies in the phyllosphere?	57
Functional fermented meat products with probiotics—A review	56
Effect of nutritional and environmental conditions on biofilm formation of avian pathogenic Escherichia coli	56
Dynamics of fungal and bacterial microbiome associated with green-mould contaminated sawdust substrate of Pleurotus pulmonarius (grey oyster mushroom)	53
Thermal fogging with disinfectants and antifreezes enables effective industrial disinfection in subzero cold-chain environment	50
Harnessing rhizobacteria to fulfil inter-linked nutrient dependency on soil and alleviate stresses in plants	49
A comparative study of in-vitro and in-silico anti-candidal activity and GC–MS profiles of snow mountain garlic vs. normal garlic	49
	45
Selection of Debaryomyces hansenii isolates as starters in meat products based on phenotypic virulence factors, tolerance to abiotic stress conditions and aroma generation	45
Issue Information	45
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Issue Information	38
Issue Information	37
The potential of Bacillus subtilis and phosphorus in improving the growth of wheat under chromium stress	36

Fermentation of chickpea flour with selected lactic acid bacteria for improving its nutritional and functional properties	36
Probiotic properties of yeasts in traditional fermented foods and beverages	35
A SARS-CoV-2 oral vaccine development strategy based on the attenuated Salmonella type III secretion system	35
Metabolite profiling reveals overexpression of the global regulator, MoLAEA leads to increased synthesis of metabolites in Magnaporthe oryzae	35
Using fermentation waste of ethanol-producing yeast for bacterial riboflavin production and recycling of spent bacterial mass for enhancing the growth of oily plants	34
Immunomodulatory and ameliorative effects of probiotic in combination with diclazuril on broilers under coccidia infection	34
Antimicrobial resistance—Do we share more than companionship with our dogs?	33
Novel pulsed infrared radiation: Effect on microbial, chemical and sensory properties of saffron (Crocus sativus L.)	33
Antifungal activity of 2-chloro-N-phenylacetamide, docking and molecular dynamics studies against clinical isolates of Candida tropicalis and Candida parapsilosis	33
Effect of thermotherapy, Leifsonia xyli subsp. xyli titres, sugarcane genotype and diagnostic techniques on ratoon stunt control in Brazil	32
Beneficial effects of fermented barley extracts on inflammatory status and gut microbiota in high-fat diet-induced obese rats	32
The probiotic potential of Lactobacillus plantarum strain RW1 isolated from canine faeces	31
A carvacrol-based product reduces Campylobacter jejuni load and alters microbiota composition in the caeca of chickens	31
Metabolomic analysis of sheath blight disease of rice (Oryza sativa L.) induced by Rhizoctonia solani phytotoxin	31
Evaluating the fermentation quality and bacterial community of high-moisture whole-plant quinoa silage ensiled with different additives	29
Dose–response analysis of Bacillus thuringiensis HD-1 cry- spore reduction on surfaces using formaldehyde with pre-germination	29
Competitive growth kinetics of Campylobacter jejuni , Escherichia coli O157:H7 and Listeria monocytogenes w	29
Rapid and visual detection of Staphylococcus aureus in milk using a recombinase polymerase amplification-lateral flow assay combined with immunomagnetic separation	29
Lactobacilli reduce recurrences of vaginal candidiasis in pregnant women: a randomized, double-blind, placebo-controlled study	29
The inactivation efficacy of plasma-activated acetic acid against Salmonella Typhimurium cells and biofilm	28
Metabolite and transcriptome analyses revealed the modulation of fructo-oligosaccharide on ileum metabolism of Taiping chickens	28
The NDT80-like transcription factor CmNdt80a affects the conidial formation and germination, mycoparasitism, and cell wall integrity of Coniothyrium minitans	27
Issue Information	27
Effect of different dosages of sodium butyrate and niacin on growth, faecal microbiota and Vitamin B metabolism in weaned piglets	27
Antimicrobial effects of automobile screen washes against Legionella pneumophila	27
Analysis of bacterial diversity and genetic evolution of Lacticaseibacillus paracasei isolates in fermentation pit mud	27
A survey of fermentation parameters, bacterial community compositions and their metabolic pathways during the ensiling of sorghum	27
Whole genome sequencing reveals antimicrobial resistance determinants (AMR genes) of Salmonella enterica recovered from raw chicken and ready-to-eat leaves imported into England between 2014 and 2019	26
Container material dictates stability of bacteriophage suspensions: Light scattering and infectivity measurements reveal mechanisms of infectious titre decay	26
Cinnamaldehyde as antimicrobial in cellulose‐based dental appliances	26
Plant endophytic bacteria: A potential resource pool of electroactive micro-organisms	25
Whole-genome sequencing links Clostridium (Clostridioides) difficile in a single hospital to diverse environmental sources in the community	25
Minding the matrix: The importance of inoculum suspensions on finger transfer efficiency of virus	25
Biogenic silver nanoparticle (Bio‐AgNP) has an antibacterial effect against carbapenem‐resistant Acinetobacter baumannii with synergism and additivity when combined with	25
Minimum inhibitory concentrations of commercial essential oils against common chicken pathogenic bacteria and their relationship with antibiotic resistance	25
Enterococcus faecium HDRsEf1 inhibits Lipopolysaccharide‐induced downregulation of zona occludens ‐1 expression via toll‐like receptor 2/4‐mediated c‐Jun N‐terminal kinase/activator	25
Characterization of a novel, biofilm dispersing, lytic bacteriophage against drug-resistant Enterobacter cloacae	24
Special Issue ‘One Health meets Omics: The way forward to investigate zoonosis’	24
Characterization of oxaliplatin removal by multispecies bacterial populations in moving bed biofilm and suspended-biomass reactors	24
Comparison of bacterial diversity, root exudates and soil enzymatic activities in the rhizosphere of AVP1-transgenic and nontransgenic wheat (Triticum aestivum L.)	24
Layers, broiler chickens and their F1 cross develop distinctly different caecal microbial communities when hatched and reared together	24
A methodological review on the characterization of microalgal biofilm and its extracellular polymeric substances	23
Biocontrol potential of Burkholderia sp. BV6 against the rice blast fungus Magnaporthe oryzae	23
Purification and characterization of a robust thermostable protease isolated from Bacillus subtilis strain HR02 as an extremozyme	23
Antibacterial activity and mechanism of ginger extract against Ralstonia solanacearum	23
Identification of antibacterial metabolites produced by a marine bacterium Halobacillus marinus HMALI004	23
Two novel screened microbial consortia and their application in combination with Lactobacillus plantarum for improving fermentation quality of high-moisture alfalfa	23
In vitro Inhibition of respiratory pathogens by lactobacillus and alpha haemolytic streptococci from Aboriginal and Torres Strait Islander children	23
Using γ-ray irradiation and epiphytic microbiota inoculation to separate the effects of chemical and microbial factors on fermentation quality and bacterial community of ensiled Pennisetum giganteum	22
Rhizospheric and endophyticPseudomonas aeruginosain edible vegetable plants share molecular and metabolic traits with clinical isolates	22

An assessment of three methods for extracting bacterial DNA from beach sand	22
Antifungal potential of Azotobacter species and its metabolites against Fusarium verticillioides and biodegradation of fumonisin	21
A commercial SnF2 toothpaste formulation reduces simulated human plaque biofilm in a dynamic typodont model	21
The following articles for this Special Issue were published in different Issues	21
Predictive growth kinetic parameters and modelled probabilities of deoxynivalenol production by Fusarium graminearum on wheat during simulated storing conditions	21
A comparative genomics approach for identifying genetic factors in Escherichia coli isolates associated with bovine diseases	21
Effects of supplementing with Humulus scandens on the growth performance and gut microbiota in piglets	21
Differences in biofilm formation of Salmonella serovars on two surfaces under two temperature conditions	21
Dodecylamine rapidly kills of spores of multiple Firmicute species: properties of the killed spores and the mechanism of the killing	21
Differing kinetics of anti-spike protein IgGs and neutralizing antibodies against SARS-CoV-2 after Comirnaty (BNT162b2) immunization	21
Interactive relationship between Trp metabolites and gut microbiota: The impact on human pathology of disease	21
Comparative survival of environmental and clinical Mycobacterium abscessus isolates in a variety of diverse host cells	20
Genomic diversity, virulence and source of Campylobacter jejuni contamination in Irish poultry slaughterhouses by whole genome sequencing	20
Rapid detoxification of Jatropha curcas cake by fermentation with a combination of three microbial strains and characterization of their metabolic profiles	20
Infrared thermography can detect previsual bacterial growth in a laboratory setting via metabolic heat detection	20
RETRACTED: Guaiacol augments quorum quenching potential of ciprofloxacin against Pseudomonas aeruginosa	20
Karlodinium veneficum: Growth optimization, metabolite characterization and biotechnological potential survey	20
Rhizosphere bacteria induce programmed cell death defence genes and signalling in chilli pepper	20
Effects of water activity, ammonia and Corynebacterium urealyticum on the survival of Salmonella Typhimurium in sterile poultry litter	20
Potential hazards associated with the consumption of Scombridae fish: Infection and toxicity from raw material and processing	20
Evaluation of environmental conditions as a decontamination approach for SARS-CoV-2 when applied to common library, archive and museum-related materials	20
High-copy genome integration and stable production of p-coumaric acid via a POT1-mediated strategy in Saccharomyces cerevisiae	20
Heterologous expression of a cryptic gene cluster from a marine proteobacterium Thalassomonas actiniarum affords new lanthipeptides thalassomonasins A and B	20
Biosorption of lead ions from aqueous solution by Clostridium tyrobutyricum immobilized in macroporous Ca-alginate-lignin beads	19
Management of Phytophthora parasitica causing gummosis in citrus using biogenic copper oxide nanoparticles	19
Anti-inflammatory potential of Lactobacillus reuteri LM1071 via eicosanoid regulation in LPS-stimulated RAW264.7 cells	19
Assessment of humoral immune response to two mRNA SARS-CoV-2 vaccines (Moderna and Pfizer) in healthcare workers fully vaccinated with and without a history of previous infection	19
Distinct dynamics of Vibrio parahaemolyticus populations in two farming models	19
Phytolectin conjugated positively charged fatty acid amide impairs virulence factors and inhibits cross-kingdom biofilm formation of Candida albicans and uropathogenic Escherichia coli	19
Application of pulsed light technology for fruits and vegetables disinfection: A review	19
Identification of spoilage microflora in draught beer using culture-dependent methods	18
Issue Information	18
Bacteriophage-antibiotic combination therapy for multidrug-resistant Pseudomonas aeruginosa: In vitro synergy testing	18
Characterization of cinnamon essential oil and its application in Malva sylvestris seed mucilage edible coating to the enhancement of the microbiological, physicochemical and sensory properties of lam	18
Identifying more targeted antimicrobials active against selected bacterial phytopathogens	18
Imaging and plate counting to quantify the effect of an antimicrobial: A case study of a photo-activated chlorine dioxide treatment	17
Inhibitory effects of atmospheric dielectric barrier discharge plasma against Bacillus cereus and Staphylococcus aureus on Gwamegi (semi-dried Cololabis saira)	17
Redesigned pMAL expression vector for easy and fast purification of active native antimicrobial peptides	17
Characterization of bacterial communities in Coregonus peled fillets during chilled storage and interactions between selected bacterial strains	17
Antifungal action of the combination of ferulic acid and ultraviolet-A irradiation against Saccharomyces cerevisiae	17
Utilization of palm oil mill effluent as a novel substrate for the production of antifungal compounds by Streptomyces philanthi RM-1-138 and evaluation of its efficacy in suppression of three strains	17
Bacterial levels and diversity in kitchen sponges and dishwashing brushes used by consumers	17
Biochemical features and early adhesion of marine Candida parapsilosis strains on high-density polyethylene	17
Comparison of Monkeypox virus genomes from the 2017 Nigeria outbreak and the 2022 outbreak	17
Protective effects of Lacticaseibacillus rhamnosus Hao9 on dextran sulphate sodium-induced ulcerative colitis in mice	16
Norovirus attribution study: Detection of norovirus from the commercial food preparation environment in outbreak and non-outbreak premises	16
Biovalorization of spent Konacha tea leaves via single-culture fermentation involving wine yeasts and lactic acid bacteria	16
Genomic characterization of high-risk Escherichia coli and Enterobacter hormaechei clones recovered from a single tertiary-care hospital in Pakistan	16
Effects of probiotic Lactiplantibacillus plantarum IMC 510 supplementation on metabolic factors in otherwise healthy overweight and obese individuals	16
Bactericidal effects of high-energy visible light on common otitis media pathogens	16
Iron and methyl jasmonate increase high-value PUFA production by elevating the expression of desaturase genes in marine microalga Isochrysis sp.,	16
Bacteriophages: A weapon against mixed-species biofilms in the food processing environment	16
Oxidative lesions and post-treatment viability attenuation of listeria monocytogenes triggered by atmospheric non-thermal plasma	16
Salmonella contamination and hazard analysis in a storage facility for feed materials in Japan	16
Integrative analyses of probiotics, pathogenic infections and host immune response highlight the importance of gut microbiota in understanding disease recovery in rainbow trout (Oncorhynchus mykiss)	16
Structure and functional capacity of a benzene-mineralizing, nitrate-reducing microbial community	15
Characterization of nitrilases from Variovorax boronicumulans that functions in insecticide flonicamid degradation and β-cyano-L-alanine detoxification	15
Antibacterial and antibiofilm activities of novel antimicrobial peptide DP7 against the periodontal pathogen Porphyromonas gingivalis	15
Genomic analysis revealed conserved acid tolerance mechanisms from native micro‐organisms in fermented feed	15
Impact of microecological agents on water environment restoration and microbial community structures of trench system in a Baiyangdian wetland ecosystem	15
Characterization of three novel DyP-type peroxidases from Streptomyces chartreusis NRRL 3882	15
Antistaphylococcal and antioxidant activities of bacteriocinogenic lactic acid bacteria and essential oil in goat coalho cheese	15
Ceriporia lacerata HG2011 enhances P mobilization and wheat agronomic performance irrespective of P fertilization levels	15
The combination of hexanal and geraniol in sublethal concentrations synergistically inhibits quorum sensing in Pseudomonas fluorescens—In vitro and in silico approaches	15
Microbiological safety of spinach throughout commercial supply chains in Gauteng Province, South Africa and characterization of isolated multidrug-resistant Escherichia coli	15
High-throughput assay for effect screening of amphotericin B and bioactive components on filamentous Candida albicans	15
Algicidal interaction between Paenibacillus polymyxa MEZ6 and microalgae	15
PCR-based ORF typing of Klebsiella pneumoniae for rapid identification of global clones and transmission events	15
Phenotypic characterization of the Hordeum bulbosum derived leaf rust resistance genes Rph22 and Rph26 in barley	14
Directional bioconversion and optimization of stevioside into rubusoside by Lelliottia sp. LST-1	14
Synthesis of chlorogenic acid and p ‐coumaroyl shikimate by expressing shikimate gene modules in Escherichia coli	14
Siderophore production in pseudomonas SP. strain SP3 enhances iron acquisition in apple rootstock	14
Infection and antibiotic treatment have prolonged effects on gut microbiota, muscle and hepatic fatty acids in rainbow trout (Oncorhynchus mykiss)	14
Comparison of planktonic bacterial communities indoor and outdoor of aquaculture greenhouses	14
Pyroligneous acid and antibacterial activity: criticism of a paper by Araújo et al. (2018)	14
Novel amikacin resistance genes identified from human gut microbiota by functional metagenomics	14
Antimicrobial compounds from an FDA-approved drug library with activity against Streptococcus suis	14
Ultrasound-assisted facile synthesis of Boron-Heck-coupled sclareol analogues as potential antibacterial agents against Staphylococcus aureus	14
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Probiotic potential of GABA-producing lactobacilli isolated from Uruguayan artisanal cheese starter cultures	14