Environmental Microbiology

Article	Citations
	121
Genomic differentiation of three pico‐phytoplankton species in the Mediterranean Sea	97
Enhanced ability of freshwater bacteria to secrete extracellular vesicles upon interaction with virus	76
Issue Information	74
Long‐Term Impact of the Largest Environmental Disaster in Latin America (Fundão Dam Failure) on Microbial Communities in Lakes of the Doce River Basin, Brazil	71
When the going gets tough, the tough get going—Novel bacterial AAA + disaggregases provide extreme heat resistance	66
The toxicological spectrum of the Bacillus cereus toxin cereulide points towards niche‐specific specialisation	65
Specificity and genetic polymorphism in the Vfm quorum sensing system of plant pathogenic bacteria of the genus Dickeya	60
Validation of key sponge symbiont pathways using genome‐centric metatranscriptomics	57
Microbial community origin and fate through a rural wastewater treatment plant	55
Late Pleistocene‐dated divergence between South Hemisphere populations of the non‐conventional yeast L . cidri	54
Beyond purified dietary fibre supplements: Compositional variation between cell wall fibre from different plants influences human faecal microbiota activity and growth in vitro	50
Integrons, transposons and IS elements promote diversification of multidrug resistance plasmids and adaptation of their hosts to antibiotic pollutant	48
The carnitine degradation pathway of Acinetobacter baumannii and its role in virulence	48
Prescribed fire selects for a pyrophilous soil sub‐community in a northern California mixed conifer forest	48
Intra‐genomic rRNA gene variability of Nassellaria and Spumellaria (Rhizaria, Radiolaria) assessed by Sanger, MinION	46
How does metal soil pollution change the plant mycobiome?	45
Hunting for pigments in bacterial settlers of the Great Pacific Garbage Patch	45
One substrate, many fates: different ways of methanol utilization in the acetogen Acetobacterium woodii	45
Assembly and comparative analyses of the Geosiphon pyriformis metagenome	45
Single‐amplified genomes reveal most streamlined free‐living marine bacteria	44
A lipopolysaccharide‐dependent phage infects a pseudomonad phytopathogen and can evolve to evade phage resistance	44
Microbe–sediment interactions in Great Lakes recreational waters: Implications for human health risk	44
Physiological stage drives fungal community dynamics and diversity in Leptospermum scoparium (mānu	43
Discovery of the non‐cosmopolitan lineages in Candidatus Thermoprofundales	43

Effects of Fire Intensity on Soil Microbial Ecology in a Grassland Ecosystem	40
Prophages carrying Zot toxins on different Vibrio genomes: A comprehensive assessment using multilayer	38
Oak Wilt Disease May Reduce the Initial Decay Rate of Dead Quercus serrata Stems by Altering Funga	38
Issue Information	37
Biodegradation of pollutants by exoelectrogenic bacteria is not always performed extracellularly	36
Effects of chaotropic salts on global proteome stability in halophilic archaea: Implications for life signatures on Mars	36
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The acetoin assimilation pathway of Pseudomonas putida KT2440 is regulated b	35
Carbon substrate re‐orders relative growth of a bacterium using Mo‐, V‐, or Fe‐nitrogenase for nitrogen fixation	35
Fossilisation of Fish Soft Tissue in Oxidative Microniches of Anoxic Sediments	34
Composition, Growth, Succession, and Function in the Cladophora Microbiome: Insights From Quantita	33
The Bacterial Genus Ramlibacter : Betaproteobacteria Capable of Surviving in Oligotrophic Environments Thanks to Several Shared Genetic Adaptation Traits	32
Impact of salinity origin on microbial communities in saline springs within the Illinois Basin, USA	32
Drivers of fungal diversity and community biogeography differ between green roofs and adjacent ground‐level green space	31
Coral holobiont research needs spatial analyses at the microbial scale	31
Coupled C, H, N, S and Fe biogeochemical cycles operating in the continental deep subsurface of the Iberian Pyrite Belt	31
Anaerobic methanotrophy is stimulated by graphene oxide in a brackish urban canal sediment	31
Fine‐scale mapping of physicochemical and microbial landscapes of the coral skeleton	31
High diversity of pathogenic Escherichia coli clones carrying mcr‐1 among gulls underlines the need for st	31
Life strategies and metabolic interactions of core microbes during thiosulphate‐based denitrification	30
Volatile Organic Compounds of Diverse Origins and Their Changes Associated With Cultivar Decay in a Fungus‐Farming Termite	30
Response of the plant core microbiome to Fusarium oxysporum infection and identification of the pa	30
Virus ecology and 7‐year temporal dynamics across a permafrost thaw gradient	30
Issue Information	29
A meta‐analysis study of the robustness and universality of gut microbiota–shrimp diseases relationship	29
Environmental vibrio phage–bacteria interaction networks reflect the genetic structure of host populations	29
New Insight Into the Mechanism of Nitrite Enhancement on Heterotrophic Nitrification and Aerobic Denitrification Bacterium in Gene Expression	29
Horizontal gene transfer (HGT) and microbial evolution	29
Toward an accurate mechanistic understanding of Wolbachia‐ induced cytoplasmic incompatibility	29
Unexpected role of electron‐transfer hub in direct degradation of pollutants by exoelectrogenic bacteria	28
The fitness benefit of pyoverdine cross‐feeding by Pseudomonas protegens Pf‐5	28
Cyanophage Infections in a Sponge Intracellular Cyanobacterial Symbiont	28
How good are global DNA ‐based environmental surveys for detecting all protist diversity? Arcellinida as an example of biased representation	28
Substrate Effect on the Contribution of Ammonium and Urea to Marine Nitrification and Nitrous Oxide Production	27
Revealing human impact on natural ecosystems through soil bacterial DNA sampled from an archaeological site	27
Seasonal variation significantly influenced the stochasticity of community assembly of amphibian symbiotic bacteria	26
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Unravelling Biodiversity, Assembly Mechanisms and Coexistence Patterns of Abundant and Rare Microeukaryotes in Water and Sediment: New Insights From Volcanic Lakes in Arxan Geopark	26
Nitrogen fertilization differentially affects the symbiotic capacity of two co‐occurring ectomycorrhizal species	26
Relationships between fluid mixing, biodiversity, and chemosynthetic primary productivity in Yellowstone hot springs	26
Correction to “Preventing multiresistance: New insights for managing fungal adaptation”	26
The filamentous γ ‐prefoldin chaperone is not essential for growth and thermal adaptation in Methanocaldococcus jannaschii	26
Issue Information	26
Metabolic Segregation and Functional Gene Clusters in Anaerobic Digestion Consortia	25
How Useful Are Plant Traits in Explaining Variation in Phyllosphere Microbial Abundance and Composition Across Hosts?	25
Core rhizosphere microbiome of Panax notoginseng and its associations with belowground biomass and saponin contents	25
Widespread formation of intracellular calcium carbonates by the bloom‐forming cyanobacterium Microcystis	24
Phytoplankton exudates provide full nutrition to a subset of accompanying heterotrophic bacteria via carbon, nitrogen and phosphorus allocation	24
Time after time: detecting annual patterns in stream bacterial biofilm communities	24
Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics	24

Diversity and ecology of Radiolaria in modern oceans	24
Seasonal shifts in Fe‐acquisition strategies in Southern Ocean microbial communities revealed by metagenomics and autonomous sampling	24
MoOpy2 is essential for fungal development, pathogenicity, and autophagy in Magnaporthe oryzae	23
Geography and environmental pressure are predictive of class‐specific radioresistance in black fungi	23
A novel soluble di‐iron monooxygenase from the soil bacterium Solimonas soli	23
Long‐range alteration of the physical environment mediates cooperation between Pseudomonas aeruginosa	23
A w Mel Wolbachia variant in Aedes aegypti from field‐colle	23
Novel oil‐associated bacteria in Arctic seawater exposed to different nutrient biostimulation regimes	23
Ferroptosis induced by the biocontrol agent Pythium oligandrum enhances soybean resistance to Phytophthora sojae	22
Highly Dynamic Archaeal and Bacterial Communities From the Surface to the Deep in the Atlantic Ocean	22
Optimal Cell Length for Exploration and Exploitation in Chemotactic Planktonic Bacteria	22
Environmental exposure more than plastic composition shapes marine microplastic‐associated bacterial communities in Pacific versus	22
Novel virulent and temperate cyanophages predicted to infect Microcoleus associated with anatoxin‐producing benthic mats	21
Influence of Seasonal Succession on Microbiological and Physiochemical Composition in Shallow Estuarine Sediments	21
Respiratory protein interactions in Dehalobacter sp. strain 8M	21
Genome and proteome analyses show the gaseous alkane degrader Desulfosarcina sp. strain BuS5 as an ext	21
Enteroviruses in Water: Epidemiology, Detection and Inactivation	21
Biogeographical patterns of abundant and rare bacterial biospheres in paddy soils across East Asia	21
Microbiome Stability Is Linked to Acropora Coral Thermotolerance in Northwestern Philippines	21
Distribution, causal agents, and infection dynamic of emerging ink disease of sweet chestnut in Southern Switzerland	21
Exploring the Exclusive Isolation of Pseudomonas syringae in Peltigera	21
Experimental evidence that lignin‐modifying enzymes are essential for degrading plant cell wall lignin by Pleurotus ostreatus using <	21
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Environmental Microbiology and Environmental Microbiology Reports	20
Elevated O 3 concentrations alter the compartment‐specific microbial com	20
Inhibition of nitrous oxide reduction in forest soil microcosms by different forms of methanobactin	20
CotG controls spore surface formation in response to the temperature of growth in Bacillus subtilis	20
Sarracenia pitcher plant‐associated microbial communities differ primarily by host species across a longitudinal gradient	20
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Linear scaling between microbial predator and prey densities in the global ocean	20
Long‐term unsustainable patterns of development rather than recent deforestation caused the emergence of Orthocoronavirinae species	20
Biodegradation in wastewater treatment plants: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	20
Clarifying Terminology in Microbial Ecology: A Call for Precision in Scientific Communication	20
Correction to “Five structural genes required for ceramide synthesis in Caulobacter and for bacter	19
Water Quality and Land Use Shape Bacterial Communities Across 621 Canadian Lakes	19
Oxic–anoxic cycling promotes coupling between complex carbon metabolism and denitrification in woodchip bioreactors	19
Countrywide inter‐epidemic region migration pattern suggests the role of southwestern population in wheat stripe rust epidemics in China	19
An ArsRC fusion protein enhances arsenate sensing and detoxification	19
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Novel broad‐spectrum bacteriophages against Xanthomonas oryzae and their biocontrol potential in rice bacterial diseases	19
Initially Coexisting Endosymbionts Migrate Into Different Tissues During Ontogeny of Host Cicadas	19
Herbicides Have Minimal and Variable Effects on the Structure and Function of Bacterial Communities in Agricultural Soils	19
From ubiquity to specificity: The diverse functions of bacterial thioredoxin systems	19
Phylogenomics, epigenomics, virulome and mobilome of Gram‐negative bacteria co‐resistant to carbapenems and polymyxins: a One Health systematic revie	19
Membrane lipid renovation in Pseudomonas aeruginosa ‐ implications for phage therapy?	18
The pH signalling transcription factor PacC modulate growth, development, stress response and path	18
Stability of a dominant sponge‐symbiont in spite of antibiotic‐induced microbiome disturbance	18
Bacterial Dynamics in Newly Settled Acropora kenti : Insights From Inoculations With Individual Probiotic Candidates	18
Selective Pressure Influences Inter‐Biome Dispersal in the Assembly of Saline Microbial Communities	18
Methylated cycloalkanes fuel a novel genus in the Porticoccaceae family (Ca. Reddybacter gen. nov)	18
Genome‐Scale Model of Rhizopus microsporus : Metabolic integration of a fungal holobiont with its bacterial and viral endosymbionts	18
Resource availability drives bacteria community resistance to pathogen invasion via altering bacterial pairwise interactions	18
Differential apicomplexan presence predicts thermal stress mortality in the Mediterranean coral Paramuricea clavata	18
Diverse viruses of marine archaea discovered using metagenomics	18
Golgi‐localized calcium/manganese transporters FgGdt1 and FgPmr1 regulate fungal development and v	18
Climate dictates microbial community composition and diversity in Australian biological soil crusts (biocrusts)	18
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Microscale imaging sheds light on species‐specific strategies for photo‐regulation and photo‐acclimation of microphytobenthic diatoms	18
Microbial Community of a Sandy Beach Subterranean Estuary is Spatially Heterogeneous and Impacted by Winter Waves	18
High salinity gradients and intermediate spatial scales shaped similar biogeographical and co‐occurrence patterns of microeukaryotes in a tropical freshwater‐saltwater ecosystem	18
Bacterial inoculation of Quercus pyrenaica trees alters co‐occurrence patterns but not the composition of the rhizosphere bacteriome in wild conditions	17
Isolation and characterization of a phage collection against Pseudomonas putida	17
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Kinetic modulation of bacterial hydrolases by microbial community structure in coastal waters	17
Denitrification fractionates N and O isotopes of nitrate following a ratio independent of carbon sources in freshwaters	17
Water deficit affects inter‐kingdom microbial connections in plant rhizosphere	17
Warm temperature inhibits cytoplasmic incompatibility induced by endosymbiotic Rickettsiella in spider hosts	17
Investigating the inoculum dynamics of Cladosporium on the surface of raspberry fruits and in the air	17
Issue Information	17
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Antibiotic Persister Cells in Acinetobacter baumannii : Overview of Molecular Mechanisms and Remov	17
Genetic Analysis of Polyunsaturated Fatty Acids Biosynthesis Pathway Determines Four Distinct Thraustochytrid Types	17
Metagenomic evidence of a novel family of anammox bacteria in a subsea environment	17
Production and utilization of pseudocobalamin in marine Synechococcus cultures and communities	17
Hierarchical phylogenetic community assembly of soil protists in a temperate agricultural field	17
Microbial biofilms: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	17
Uniform selective pressures within redox zones drive gradual changes in microbial community composition in hadal sediments	17
Rehabilitation of the ‘bad guys’ for biocontrol applications	17

Bacteriophages vehiculate a high amount of antibiotic resistance determinants of bacterial origin in the Orne River ecosystem	17
The cAMP‐PKA signalling pathway regulates hyphal growth, conidiation, trap morphogenesis, stress tolerance, and autophagy in A	17
Toward a molecular understanding of fluoride stress in a model Pseudomonas strain	16
Identification of dominant taxa of sooty moulds and their impact on the leaf microbiome	16
Tolerance to Herbicides and Resistance to Antibacterial Drugs of Bacterial Isolates From the Guarani Aquifer System (Brazil)	16
Cold Surface Waters of the Sub‐Antarctic Pacific Ocean Support High Cyanophage Abundances and Infection Levels	16
Functional analysis of the apple fruit microbiome based on shotgun metagenomic sequencing of conventional and organic orchard samples	16
The 2‐methylpropene degradation pathway in Mycobacteriaceae family strains	16
Distinct strategies of the habitat generalists and specialists in sediment of Tibetan lakes	16
Genetic Diversity and Anatoxin Profiles of Freshwater Benthic Cyanobacteria From Nova Scotia (Canada)	16
Marine microbes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	16
The bianchetto truffle ( Tuber borchii ) a lead‐resistant ectomycorrhizal fungus increases	16
Biosolids for safe land application: does wastewater treatment plant size matters when considering antibiotics, pollutants, microbiome, mobile genetic elements and associated resistance genes?	16
Continuous Rice Cultivation Increases Celery Yield by Enhancing Plant Beneficial Bacteria in Rice‐Celery Rotations	16
Coexistence Theory for Microbial Ecology, and Vice Versa	16
Employing a triple metabarcoding approach to differentiate active, dormant and dead microeukaryotes in sediments	16
Adaptation of Listeria monocytogenes to perturbation of c‐di‐AMP metabolism underpins its role in osmo	16
New Strains of the Deep Branching Streptophyte Streptofilum : Phylogenetic Position, Cell Biological and Ecophysiological Traits, and Description of	16
Web Alert: Microbes and plastics: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	16
Microecosystem of yak rumen on the Qinghai‐Tibetan Plateau is stable and is unaffected by soil or grass microbiota	16
Multi‐omics analysis of antagonistic interactions among free‐living Pseudonocardia from diverse ecosystems	16
Summer thaw duration is a strong predictor of the soil microbiome and its response to permafrost thaw in arctic tundra	15
Following the flow—Microbial ecology in surface‐ and groundwaters in the glacial forefield of a rapidly retreating glacier in Iceland	15
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Plant salt tolerance: ACC deaminase‐producing endophytes change plant proteomic profiles	15
Identification of putative coral pathogens in endangered Caribbean staghorn coral using machine learning	15
Isolation and characterization of a novel methanogen Methanosarcina hadiensis sp. nov. from subsurface Boom Clay pore water	15
The Influence of Symbiont Identity on the Proteomic and Metabolomic Responses of the Model Cnidarian Aiptasia to Thermal Stress	15
Fluid dynamics and cell‐bound Psl polysaccharide allows microplastic capture, aggregation and subsequent sedimentation by Pseudomonas aeruginosa in water	15
Percent‐Level Copper Mineralisation Promoted by Copper‐Tolerant Iron‐Oxidising Bacteria in Circumneutral Mine Drainage	15
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Disentangle genus microdiversity within a complex microbial community by using a multi‐distance long‐read binning method: example of Candidatus Accumulib	15
Polar flagellar wrapping and lateral flagella jointly contribute to Shewanella putrefaciens environmental spreading	15
Warming Seawater Temperature and Nutrient Depletion Alters Microbial Community Composition on a Foundational Canopy Kelp Species	15
Comparative transcriptome analysis reveals different adaptation mechanisms for degradation of very long‐chain and normal long‐chain alkanes in Dietzia sp	15
Microplastic ingestion affects hydrogen production and microbiomes in the gut of the terrestrial isopod Porcellio scaber	15
Issue Information	15
Antidepressants: A new front in the war against antibiotics resistance	15
Gene Expression by a Model Fungus in the Ascomycota Provides Insight Into the Decay of Fungal Necromass	15
Can we manage microbial systems to enhance carbon storage?	15
Bacteriophage–Bacteria Interactions Promote Ecological Multifunctionality in Compost‐Applied Soils	14
Antarctic Geothermal Soils Exhibit an Absence of Regional Habitat Generalist Microorganisms	14
Structural and functional microbial diversity in deadwood respond to decomposition dynamics	14
The exometabolome of microbial communities inhabiting bare ice surfaces on the southern Greenland Ice Sheet	14
Drivers of Marine Phytoplankton Diversity and Connectivity in the Galápagos Archipelago Spanning an ENSO Cycle	14
Gene expression in the microbial consortia of colonial Microcystis aeruginosa ‐a potential buoyant particulate biofilm	14
Complex and flexible catabolism in Aromatoleum aromaticum   pCyN1	14
Growth of nitrite‐oxidizing Nitrospira and ammonia‐oxidizing Nitrosomonas in marine recirculating tricklin	14
Prevalence of genetically similar Flavobacterium columnare phages across aquaculture environments reveals a strong potential for pathogen control	14
Wolbachia Feminises a Spider Host With Assistance From Co‐Infecting Symbionts	14
Continental‐scale niche differentiation of dominant topsoil archaea in drylands	14
Metatranscriptomes reveal the diverse responses of Thaumarchaeota ecotypes to environmental variat	14
The secret life of plant‐beneficial rhizosphere bacteria: insects as alternative hosts	14
Histone deacetylase SirE regulates development, DNA damage response and aflatoxin production in Aspergillus flavus	13
Unravelling the genomic and environmental diversity of the ubiquitous Solirubrobacter	13
The pan‐genome of Splendidus clade species in the family Vibrionaceae : Insights into evolution, adaptation, and pathogenicity	13
Correction to “Mixed‐mode bacterial transmission in the common brooding coral Pocillopora acuta ”	13
Microdiversity in marine pelagic ammonia‐oxidizing archaeal populations in a Mediterranean long‐read metagenome	13
Regulation of environmental stress responses: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	13
Short‐term plastisphere colonization dynamics across six plastic types	13
Microplastics reduce soil microbial network complexity and ecological deterministic selection	13
Altering environmental conditions induce shifts in simulated deep terrestrial subsurface bacterial communities—Secretion of primary and secondary metabolites	13
Photoelectron‐promoted metabolism of sulphate‐reducing microorganisms in substrate‐depleted environments	13
Correction to “ Azospirillum baldaniorum Sp245 exploits Pseudomonas fluorescens A506	13
Adaptive Responses of Cyanobacteria to Phosphate Limitation: A Focus on Marine Diazotrophs	13
The Bacillus phage SPβ and its relatives: a temperate phage model system reveals new strains, species,	13
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Uptake of inorganic and organic phosphorus compounds by two marine sponges and their associated bacterial communities in aquaria	13
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Identification and Global Distribution of a Core Microbiome From High‐Arctic Lakes	12
ZfpA ‐Dependent Quorum Sensing Shifts in Morphology and Secondary Metabolism in Aspergillus flavus	12
High‐Temporal Resolution of Microbial Food Web Dynamics and Structure During Phytoplankton Blooms in the Baltic Sea	12
Issue Information	12
Data‐driven identification of major axes of functional variation in bacteria	12
Stochastic and deterministic processes shape bioenergy crop microbiomes along a vertical soil niche	12
Rhizobium leguminosarum symbiovar viciae	12
Environmental paleomicrobiology: using DNA preserved in aquatic sediments to its full potential	12
Aedes aegypti gut transcriptomes respond differently to microbiome transplants from field‐caught or laboratory‐reared mosquitoes	12
Marine Bacterioplankton Composition Predicts Oxygen Consumption During Dissolved Organic Matter Degradation Experiments	12
Ecophysiological analysis reveals distinct environmental preferences in closely related Baltic Sea picocyanobacteria	12
Punch in the gut: parasite tolerance of phytochemicals reflects host diet	12
Temporal variations of Microsporidia diversity and discovery of new host–parasite interactions in a lake ecosystem	12
The evolving copiotrophic/oligotrophic dichotomy: From Winogradsky to physiology and genomics	12
Label‐free proteomics approach reveals candidate proteins in rice ( Oryza sativa L.) important for ACC	12
Metaproteomics to understand how microbiota function: The crystal ball predicts a promising future	12
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Illuminating the dark metabolome of Pseudo‐nitzschia –microbiome associations	12
Geochemical factors impacting nitrifying communities in sandy sediments	12
Genome analysis and description of Tunturibacter gen. nov. expands the diversity of Terriglobia in tundra	12
Biocrust diazotrophs and bacteria rather than fungi are sensitive to chronic low N deposition	12
Seasonal dynamics in microbial trace metals transporters during phytoplankton blooms in the Southern Ocean	12
Some like it cold: the cellular organization and physiological limits of cold‐tolerant nitrite‐oxidizing Nitrotoga	12
Distinct community assembly and co‐existence of arbuscular mycorrhizal fungi and diazotrophs across large‐scale soil fertility to improve functions in alfalfa cultivation systems	11