Environmental Microbiology

Article	Citations
	87
Genomic differentiation of three pico‐phytoplankton species in the Mediterranean Sea	81
Enhanced ability of freshwater bacteria to secrete extracellular vesicles upon interaction with virus	77
Issue Information	76
Long‐Term Impact of the Largest Environmental Disaster in Latin America (Fundão Dam Failure) on Microbial Communities in Lakes of the Doce River Basin, Brazil	70
Single‐amplified genomes reveal most streamlined free‐living marine bacteria	62
Intra‐genomic rRNA gene variability of Nassellaria and Spumellaria (Rhizaria, Radiolaria) assessed by Sanger, MinION	61
The carnitine degradation pathway of Acinetobacter baumannii and its role in virulence	60
The toxicological spectrum of the Bacillus cereus toxin cereulide points towards niche‐specific specialisation	55
Hydrologic History Regulates Microbial Biofilm Diversity and Ecosystem Function	53
Integrons, transposons and IS elements promote diversification of multidrug resistance plasmids and adaptation of their hosts to antibiotic pollutant	51
Genomic and Transcriptomic Insights Into the Autotrophic Metabolism on H 2	51
How does metal soil pollution change the plant mycobiome?	50
Hunting for pigments in bacterial settlers of the Great Pacific Garbage Patch	47
Beyond purified dietary fibre supplements: Compositional variation between cell wall fibre from different plants influences human faecal microbiota activity and growth in vitro	46
One substrate, many fates: different ways of methanol utilization in the acetogen Acetobacterium woodii	46
Late Pleistocene‐dated divergence between South Hemisphere populations of the non‐conventional yeast L . cidri	46
Validation of key sponge symbiont pathways using genome‐centric metatranscriptomics	44
When the going gets tough, the tough get going—Novel bacterial AAA + disaggregases provide extreme heat resistance	43
Assembly and comparative analyses of the Geosiphon pyriformis metagenome	40
Microbe–sediment interactions in Great Lakes recreational waters: Implications for human health risk	39
Microbial community origin and fate through a rural wastewater treatment plant	38
A lipopolysaccharide‐dependent phage infects a pseudomonad phytopathogen and can evolve to evade phage resistance	36
Prescribed fire selects for a pyrophilous soil sub‐community in a northern California mixed conifer forest	36
Effects of chaotropic salts on global proteome stability in halophilic archaea: Implications for life signatures on Mars	35

Edible Fungi Are a Hidden Source of Carbon Monoxide and Carbon Dioxide	35
Virus ecology and 7‐year temporal dynamics across a permafrost thaw gradient	35
Anaerobic methanotrophy is stimulated by graphene oxide in a brackish urban canal sediment	34
Volatile Organic Compounds of Diverse Origins and Their Changes Associated With Cultivar Decay in a Fungus‐Farming Termite	34
High diversity of pathogenic Escherichia coli clones carrying mcr‐1 among gulls underlines the need for st	34
Prophages carrying Zot toxins on different Vibrio genomes: A comprehensive assessment using multilayer	33
Discovery of the non‐cosmopolitan lineages in Candidatus Thermoprofundales	33
Issue Information	33
	32
Composition, Growth, Succession, and Function in the Cladophora Microbiome: Insights From Quantita	32
Effects of Fire Intensity on Soil Microbial Ecology in a Grassland Ecosystem	32
Environmental vibrio phage–bacteria interaction networks reflect the genetic structure of host populations	32
Physiological stage drives fungal community dynamics and diversity in Leptospermum scoparium (mānu	31
The Bacterial Genus Ramlibacter : Betaproteobacteria Capable of Surviving in Oligotrophic Environments Thanks to Several Shared Genetic Adaptation Traits	31
Oak Wilt Disease May Reduce the Initial Decay Rate of Dead Quercus serrata Stems by Altering Funga	31
Fossilisation of Fish Soft Tissue in Oxidative Microniches of Anoxic Sediments	30
New Insight Into the Mechanism of Nitrite Enhancement on Heterotrophic Nitrification and Aerobic Denitrification Bacterium in Gene Expression	29
Fine‐scale mapping of physicochemical and microbial landscapes of the coral skeleton	29
Drivers of fungal diversity and community biogeography differ between green roofs and adjacent ground‐level green space	28
A meta‐analysis study of the robustness and universality of gut microbiota–shrimp diseases relationship	27
Millimetre‐Scale Stratification of Microbial Communities in Hydrothermal Sediments	27
Impact of salinity origin on microbial communities in saline springs within the Illinois Basin, USA	27
Leached Nitrate Reduces the Abundance of Antibiotic Resistance Genes in Deep Soil Layers up to 10 m	27
Coupled C, H, N, S and Fe biogeochemical cycles operating in the continental deep subsurface of the Iberian Pyrite Belt	26
Toward an accurate mechanistic understanding of Wolbachia‐ induced cytoplasmic incompatibility	26
Resilient Communities: The Role of Biofilms in Salmonella enterica Ecology, Persistence and Pathog	26
Response of the plant core microbiome to Fusarium oxysporum infection and identification of the pa	25
Cyanophage Infections in a Sponge Intracellular Cyanobacterial Symbiont	25
Issue Information	25
The acetoin assimilation pathway of Pseudomonas putida KT2440 is regulated b	25
Horizontal gene transfer (HGT) and microbial evolution	25
Coral holobiont research needs spatial analyses at the microbial scale	25
Life strategies and metabolic interactions of core microbes during thiosulphate‐based denitrification	25
Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics	25
Widespread formation of intracellular calcium carbonates by the bloom‐forming cyanobacterium Microcystis	24
Highly Dynamic Archaeal and Bacterial Communities From the Surface to the Deep in the Atlantic Ocean	24
Metabolic Segregation and Functional Gene Clusters in Anaerobic Digestion Consortia	24
A novel soluble di‐iron monooxygenase from the soil bacterium Solimonas soli	24
Substrate Effect on the Contribution of Ammonium and Urea to Marine Nitrification and Nitrous Oxide Production	23
Issue Information	23
The filamentous γ ‐prefoldin chaperone is not essential for growth and thermal adaptation in Methanocaldococcus jannaschii	23
Revealing human impact on natural ecosystems through soil bacterial DNA sampled from an archaeological site	23
	23
Correction to “Preventing multiresistance: New insights for managing fungal adaptation”	23
Unravelling Biodiversity, Assembly Mechanisms and Coexistence Patterns of Abundant and Rare Microeukaryotes in Water and Sediment: New Insights From Volcanic Lakes in Arxan Geopark	23
Time after time: detecting annual patterns in stream bacterial biofilm communities	23
The fitness benefit of pyoverdine cross‐feeding by Pseudomonas protegens Pf‐5	22
Optimal Cell Length for Exploration and Exploitation in Chemotactic Planktonic Bacteria	22
Enteroviruses in Water: Epidemiology, Detection and Inactivation	22
How Useful Are Plant Traits in Explaining Variation in Phyllosphere Microbial Abundance and Composition Across Hosts?	22

Geography and environmental pressure are predictive of class‐specific radioresistance in black fungi	21
Core rhizosphere microbiome of Panax notoginseng and its associations with belowground biomass and saponin contents	21
Long‐range alteration of the physical environment mediates cooperation between Pseudomonas aeruginosa	21
Relationships between fluid mixing, biodiversity, and chemosynthetic primary productivity in Yellowstone hot springs	21
How good are global DNA ‐based environmental surveys for detecting all protist diversity? Arcellinida as an example of biased representation	21
Environmental exposure more than plastic composition shapes marine microplastic‐associated bacterial communities in Pacific versus	21
Novel oil‐associated bacteria in Arctic seawater exposed to different nutrient biostimulation regimes	21
Seasonal shifts in Fe‐acquisition strategies in Southern Ocean microbial communities revealed by metagenomics and autonomous sampling	21
Distribution, causal agents, and infection dynamic of emerging ink disease of sweet chestnut in Southern Switzerland	21
Influence of Seasonal Succession on Microbiological and Physiochemical Composition in Shallow Estuarine Sediments	21
Ferroptosis induced by the biocontrol agent Pythium oligandrum enhances soybean resistance to Phytophthora sojae	21
Seasonal variation significantly influenced the stochasticity of community assembly of amphibian symbiotic bacteria	21
Linear scaling between microbial predator and prey densities in the global ocean	20
Environmental Microbiology and Environmental Microbiology Reports	20
Correction to “Five structural genes required for ceramide synthesis in Caulobacter and for bacter	20
	20
	20
	20
Biodegradation in wastewater treatment plants: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	20
Long‐term unsustainable patterns of development rather than recent deforestation caused the emergence of Orthocoronavirinae species	20
Herbicides Have Minimal and Variable Effects on the Structure and Function of Bacterial Communities in Agricultural Soils	20
Clarifying Terminology in Microbial Ecology: A Call for Precision in Scientific Communication	20
Experimental evidence that lignin‐modifying enzymes are essential for degrading plant cell wall lignin by Pleurotus ostreatus using <	19
Methylated cycloalkanes fuel a novel genus in the Porticoccaceae family (Ca. Reddybacter gen. nov)	19
Water Quality and Land Use Shape Bacterial Communities Across 621 Canadian Lakes	19
Inhibition of nitrous oxide reduction in forest soil microcosms by different forms of methanobactin	19
Membrane lipid renovation in Pseudomonas aeruginosa ‐ implications for phage therapy?	19
Microscale imaging sheds light on species‐specific strategies for photo‐regulation and photo‐acclimation of microphytobenthic diatoms	19
Elevated O 3 concentrations alter the compartment‐specific microbial com	19
Novel virulent and temperate cyanophages predicted to infect Microcoleus associated with anatoxin‐producing benthic mats	19
An Explicit Test of Kill the Winner: Protistan Grazing and Phage Lysis Differentially Impact Fast‐Growing Bacterial Taxa in the Coastal Antarctic	19
Exploring the Exclusive Isolation of Pseudomonas syringae in Peltigera	19
Integrated Analysis of Midgut Transcriptome and Microbiome Reveals That Manganese‐Induced Dysbiosis Drives Metabolic Disruption and Developmental Toxicity in	19
Resource availability drives bacteria community resistance to pathogen invasion via altering bacterial pairwise interactions	19
Oxic–anoxic cycling promotes coupling between complex carbon metabolism and denitrification in woodchip bioreactors	19
The cAMP‐PKA signalling pathway regulates hyphal growth, conidiation, trap morphogenesis, stress tolerance, and autophagy in A	18
	18
Biogeographical patterns of abundant and rare bacterial biospheres in paddy soils across East Asia	18
Microbiome Stability Is Linked to Acropora Coral Thermotolerance in Northwestern Philippines	18
Novel broad‐spectrum bacteriophages against Xanthomonas oryzae and their biocontrol potential in rice bacterial diseases	18
Microbial Community of a Sandy Beach Subterranean Estuary is Spatially Heterogeneous and Impacted by Winter Waves	18
Bacterial inoculation of Quercus pyrenaica trees alters co‐occurrence patterns but not the composition of the rhizosphere bacteriome in wild conditions	18
Respiratory protein interactions in Dehalobacter sp. strain 8M	18
From ubiquity to specificity: The diverse functions of bacterial thioredoxin systems	18
	18
High‐Resolution Community Profiling of Active Bacteria and Eukaryotes in Replant‐Diseased Blueberry Farm Soils From New Jersey, USA	18
Kinetic modulation of bacterial hydrolases by microbial community structure in coastal waters	18
Toward a molecular understanding of fluoride stress in a model Pseudomonas strain	18
Iron Sulfides Produced by Thermococcales: An Iron Detoxification Mechanism	18
Initially Coexisting Endosymbionts Migrate Into Different Tissues During Ontogeny of Host Cicadas	18
Countrywide inter‐epidemic region migration pattern suggests the role of southwestern population in wheat stripe rust epidemics in China	18
Climate dictates microbial community composition and diversity in Australian biological soil crusts (biocrusts)	18
Genome‐Scale Model of Rhizopus microsporus : Metabolic integration of a fungal holobiont with its bacterial and viral endosymbionts	18
Adaptation of Listeria monocytogenes to perturbation of c‐di‐AMP metabolism underpins its role in osmo	17
	17
Production and utilization of pseudocobalamin in marine Synechococcus cultures and communities	17
Rehabilitation of the ‘bad guys’ for biocontrol applications	17
Uniform selective pressures within redox zones drive gradual changes in microbial community composition in hadal sediments	17
	17
Microbial biofilms: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	17
Issue Information	17
	17
Hierarchical phylogenetic community assembly of soil protists in a temperate agricultural field	17
Genetic Diversity and Anatoxin Profiles of Freshwater Benthic Cyanobacteria From Nova Scotia (Canada)	16
Selective Pressure Influences Inter‐Biome Dispersal in the Assembly of Saline Microbial Communities	16
Water deficit affects inter‐kingdom microbial connections in plant rhizosphere	16
Employing a triple metabarcoding approach to differentiate active, dormant and dead microeukaryotes in sediments	16
Genetic Analysis of Polyunsaturated Fatty Acids Biosynthesis Pathway Determines Four Distinct Thraustochytrid Types	16
Multi‐omics analysis of antagonistic interactions among free‐living Pseudonocardia from diverse ecosystems	16
Differential apicomplexan presence predicts thermal stress mortality in the Mediterranean coral Paramuricea clavata	16
Golgi‐localized calcium/manganese transporters FgGdt1 and FgPmr1 regulate fungal development and v	16
Bacterial Dynamics in Newly Settled Acropora kenti : Insights From Inoculations With Individual Probiotic Candidates	16
Denitrification fractionates N and O isotopes of nitrate following a ratio independent of carbon sources in freshwaters	16
Stability of a dominant sponge‐symbiont in spite of antibiotic‐induced microbiome disturbance	16
	16
Isolation and characterization of a phage collection against Pseudomonas putida	16
Bacteriophages vehiculate a high amount of antibiotic resistance determinants of bacterial origin in the Orne River ecosystem	16
Distinct strategies of the habitat generalists and specialists in sediment of Tibetan lakes	16
Diverse viruses of marine archaea discovered using metagenomics	15
Coexistence Theory for Microbial Ecology, and Vice Versa	15

Tolerance to Herbicides and Resistance to Antibacterial Drugs of Bacterial Isolates From the Guarani Aquifer System (Brazil)	15
Following the flow—Microbial ecology in surface‐ and groundwaters in the glacial forefield of a rapidly retreating glacier in Iceland	15
Correction to “How to Identify and Quantify the Members of the Bacillus Genus?”	15
Marine microbes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	15
Web Alert: Microbes and plastics: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	15
Percent‐Level Copper Mineralisation Promoted by Copper‐Tolerant Iron‐Oxidising Bacteria in Circumneutral Mine Drainage	15
Antibiotic Persister Cells in Acinetobacter baumannii : Overview of Molecular Mechanisms and Remov	15
Warm temperature inhibits cytoplasmic incompatibility induced by endosymbiotic Rickettsiella in spider hosts	15
Investigating the inoculum dynamics of Cladosporium on the surface of raspberry fruits and in the air	15
The bianchetto truffle ( Tuber borchii ) a lead‐resistant ectomycorrhizal fungus increases	15
Identification of dominant taxa of sooty moulds and their impact on the leaf microbiome	15
Microecosystem of yak rumen on the Qinghai‐Tibetan Plateau is stable and is unaffected by soil or grass microbiota	14
The Influence of Symbiont Identity on the Proteomic and Metabolomic Responses of the Model Cnidarian Aiptasia to Thermal Stress	14
Functional analysis of the apple fruit microbiome based on shotgun metagenomic sequencing of conventional and organic orchard samples	14
Continuous Rice Cultivation Increases Celery Yield by Enhancing Plant Beneficial Bacteria in Rice‐Celery Rotations	14
New Strains of the Deep Branching Streptophyte Streptofilum : Phylogenetic Position, Cell Biological and Ecophysiological Traits, and Description of	14
Microplastic ingestion affects hydrogen production and microbiomes in the gut of the terrestrial isopod Porcellio scaber	14
Warming Seawater Temperature and Nutrient Depletion Alters Microbial Community Composition on a Foundational Canopy Kelp Species	14
Distribution and Feeding of Hexatilemonas jangsaensis , a Novel Cosmopolitan Member of the Uncultured Marine Apusomonad Clade	14
Cold Surface Waters of the Sub‐Antarctic Pacific Ocean Support High Cyanophage Abundances and Infection Levels	14
Summer thaw duration is a strong predictor of the soil microbiome and its response to permafrost thaw in arctic tundra	14
The 2‐methylpropene degradation pathway in Mycobacteriaceae family strains	14
Drivers of Marine Phytoplankton Diversity and Connectivity in the Galápagos Archipelago Spanning an ENSO Cycle	13
	13
Growth of nitrite‐oxidizing Nitrospira and ammonia‐oxidizing Nitrosomonas in marine recirculating tricklin	13
Short‐term plastisphere colonization dynamics across six plastic types	13
Gene expression in the microbial consortia of colonial Microcystis aeruginosa ‐a potential buoyant particulate biofilm	13
Issue Information	13
Unravelling the genomic and environmental diversity of the ubiquitous Solirubrobacter	13
Polar flagellar wrapping and lateral flagella jointly contribute to Shewanella putrefaciens environmental spreading	13
Antidepressants: A new front in the war against antibiotics resistance	13
Microbial Metabolism and Disease Virulence Changes Across Day and Night in Coral Black Band Disease Lesions	13
	13
Isolation and characterization of a novel methanogen Methanosarcina hadiensis sp. nov. from subsurface Boom Clay pore water	13
Continental‐scale niche differentiation of dominant topsoil archaea in drylands	13
	13
Metatranscriptomes reveal the diverse responses of Thaumarchaeota ecotypes to environmental variat	13
Complex and flexible catabolism in Aromatoleum aromaticum   pCyN1	13
Issue Information	12
Genome analysis and description of Tunturibacter gen. nov. expands the diversity of Terriglobia in tundra	12
Correction to “Unveiling Unusual Ecofunctional Traits of Endozoicomonas Species Through Comprehensive Comparative Genomics”	12
Bacteriophage–Bacteria Interactions Promote Ecological Multifunctionality in Compost‐Applied Soils	12
Soil Functionality Undermined by Symbiotic Fungal Decline Following Forest Conversion	12
Adaptive Responses of Cyanobacteria to Phosphate Limitation: A Focus on Marine Diazotrophs	12
Uptake of inorganic and organic phosphorus compounds by two marine sponges and their associated bacterial communities in aquaria	12
	12
Marine Bacterioplankton Composition Predicts Oxygen Consumption During Dissolved Organic Matter Degradation Experiments	12
Regulation of environmental stress responses: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	12
Antarctic Geothermal Soils Exhibit an Absence of Regional Habitat Generalist Microorganisms	12
Identification of putative coral pathogens in endangered Caribbean staghorn coral using machine learning	12
Hydrazine Synthase From Anammox Is Inhibited by Linear and Aromatic Alkynes	12
The pan‐genome of Splendidus clade species in the family Vibrionaceae : Insights into evolution, adaptation, and pathogenicity	12
Histone deacetylase SirE regulates development, DNA damage response and aflatoxin production in Aspergillus flavus	12
High‐Temporal Resolution of Microbial Food Web Dynamics and Structure During Phytoplankton Blooms in the Baltic Sea	12
Genomic and Ecological Flexibility Shape the Global Distribution of a Black Fungus	12
	12
Wolbachia Feminises a Spider Host With Assistance From Co‐Infecting Symbionts	12
Gene Expression by a Model Fungus in the Ascomycota Provides Insight Into the Decay of Fungal Necromass	12
The exometabolome of microbial communities inhabiting bare ice surfaces on the southern Greenland Ice Sheet	12
Can we manage microbial systems to enhance carbon storage?	12
Structural and functional microbial diversity in deadwood respond to decomposition dynamics	12
Dynamics and Eco‐Genomics of Baltic Sea Nitrifiers: Seasonality, Niches, Interactions and Genomic Uniqueness	12
Photoelectron‐promoted metabolism of sulphate‐reducing microorganisms in substrate‐depleted environments	12
Dissecting host‐microbiome interaction effects on phytoplankton microbiome composition and diversity	11
	11
	11
	11
Illuminating the dark metabolome of Pseudo‐nitzschia –microbiome associations	11
Correction to “Mixed‐mode bacterial transmission in the common brooding coral Pocillopora acuta ”	11
Issue Information	11
Identification and Global Distribution of a Core Microbiome From High‐Arctic Lakes	11
Data‐driven identification of major axes of functional variation in bacteria	11
Microbes and toxic aldehydes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	11
Distribution of Surface‐Layer Prokaryotes in the Western Arctic Ocean: Responses to Pacific Water Inflow and Sea Ice Melting	11
Is Everything Everywhere? Dispersal Limitation Impacts Methanotroph Community Functioning	11
Bacterioplankton dispersal and biogeochemical function across Alaskan Arctic catchments	11
Temporal variability in nutrient use among Streptomyces suggests dynamic niche partitioning	11
Microdiversity in marine pelagic ammonia‐oxidizing archaeal populations in a Mediterranean long‐read metagenome	11
Correction to “ Azospirillum baldaniorum Sp245 exploits Pseudomonas fluorescens A506	11
Ecophysiological analysis reveals distinct environmental preferences in closely related Baltic Sea picocyanobacteria	11
Aedes aegypti gut transcriptomes respond differently to microbiome transplants from field‐caught or laboratory‐reared mosquitoes	11
Seasonal dynamics in microbial trace metals transporters during phytoplankton blooms in the Southern Ocean	11
Rapid Icm/Dot T4SS Inactivation Prevents Resuscitation of Heat‐Induced VBNC Legionella pneumoph	11
Distribution of Iron Importers and Ecological Traits in Pseudomonas Species Highlights the Potenti	11
Anaerobic Limonene Metabolism in a Methanogenic Enrichment Involves a Glycine Radical Enzyme	11
Saliva for molecular detection of SARS‐CoV ‐2 in pre‐school and school‐age children	11
Use of Microbial Biofilms to Assess Groundwater Quality in Karstic Ecosystems	11
Altering environmental conditions induce shifts in simulated deep terrestrial subsurface bacterial communities—Secretion of primary and secondary metabolites	11
Towards Functional Fertilisers: Feed Composition Shapes Microbial Community Structure and Viability in Black Soldier Fly ( Hermetia illucens	11
Geochemical factors impacting nitrifying communities in sandy sediments	11
Metaproteomics to understand how microbiota function: The crystal ball predicts a promising future	11
ZfpA ‐Dependent Quorum Sensing Shifts in Morphology and Secondary Metabolism in Aspergillus flavus	11
Biocrust diazotrophs and bacteria rather than fungi are sensitive to chronic low N deposition	10
Correction to ‘Illuminating the dark metabolome of Pseudo‐nitzschia –microbiome associations’	10
Exopolysaccharides amylovoran and levan contribute to sliding motility in the fire blight pathogen Erwinia amylovora	10