Environmental Microbiology

Article	Citations
Specificity and genetic polymorphism in the Vfm quorum sensing system of plant pathogenic bacteria of the genus Dickeya	118
Intra‐genomic rRNA gene variability of Nassellaria and Spumellaria (Rhizaria, Radiolaria) assessed by Sanger, MinION	89
Beyond purified dietary fibre supplements: Compositional variation between cell wall fibre from different plants influences human faecal microbiota activity and growth in vitro	75
Hunting for pigments in bacterial settlers of the Great Pacific Garbage Patch	68
The carnitine degradation pathway of Acinetobacter baumannii and its role in virulence	67
Integrons, transposons and IS elements promote diversification of multidrug resistance plasmids and adaptation of their hosts to antibiotic pollutant	62
Validation of key sponge symbiont pathways using genome‐centric metatranscriptomics	60
Microbial community origin and fate through a rural wastewater treatment plant	59
A lipopolysaccharide‐dependent phage infects a pseudomonad phytopathogen and can evolve to evade phage resistance	58
Microbe–sediment interactions in Great Lakes recreational waters: Implications for human health risk	55
One substrate, many fates: different ways of methanol utilization in the acetogen Acetobacterium woodii	53
The toxicological spectrum of the Bacillus cereus toxin cereulide points towards niche‐specific specialisation	50
Prescribed fire selects for a pyrophilous soil sub‐community in a northern California mixed conifer forest	48
Genomic differentiation of three pico‐phytoplankton species in the Mediterranean Sea	47
Long‐Term Impact of the Largest Environmental Disaster in Latin America (Fundão Dam Failure) on Microbial Communities in Lakes of the Doce River Basin, Brazil	47
Issue Information	47
Late Pleistocene‐dated divergence between South Hemisphere populations of the non‐conventional yeast L . cidri	45
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Enhanced ability of freshwater bacteria to secrete extracellular vesicles upon interaction with virus	45
Assembly and comparative analyses of the Geosiphon pyriformis metagenome	44
Single‐amplified genomes reveal most streamlined free‐living marine bacteria	43
When the going gets tough, the tough get going—Novel bacterial AAA + disaggregases provide extreme heat resistance	43
How does metal soil pollution change the plant mycobiome?	43
Fossilisation of Fish Soft Tissue in Oxidative Microniches of Anoxic Sediments	42
Sulfidic acetate mineralization at 45°C by an aquifer microbial community: key players and effects of heat changes on activity and community structure	42

Virus ecology and 7‐year temporal dynamics across a permafrost thaw gradient	41
Composition, Growth, Succession, and Function in the Cladophora Microbiome: Insights From Quantita	41
Biodegradation of pollutants by exoelectrogenic bacteria is not always performed extracellularly	39
Carbon substrate re‐orders relative growth of a bacterium using Mo‐, V‐, or Fe‐nitrogenase for nitrogen fixation	38
Effects of chaotropic salts on global proteome stability in halophilic archaea: Implications for life signatures on Mars	38
Drivers of fungal diversity and community biogeography differ between green roofs and adjacent ground‐level green space	36
The Bacterial Genus Ramlibacter : Betaproteobacteria Capable of Surviving in Oligotrophic Environments Thanks to Several Shared Genetic Adaptation Traits	35
The acetoin assimilation pathway of Pseudomonas putida KT2440 is regulated b	35
Impact of salinity origin on microbial communities in saline springs within the Illinois Basin, USA	35
Coupled C, H, N, S and Fe biogeochemical cycles operating in the continental deep subsurface of the Iberian Pyrite Belt	35
Volatile Organic Compounds of Diverse Origins and Their Changes Associated With Cultivar Decay in a Fungus‐Farming Termite	35
A meta‐analysis study of the robustness and universality of gut microbiota–shrimp diseases relationship	34
Oak Wilt Disease May Reduce the Initial Decay Rate of Dead Quercus serrata Stems by Altering Funga	33
Issue Information	33
Toward an accurate mechanistic understanding of Wolbachia‐ induced cytoplasmic incompatibility	31
Response of the plant core microbiome to Fusarium oxysporum infection and identification of the pa	31
Effects of Fire Intensity on Soil Microbial Ecology in a Grassland Ecosystem	31
High diversity of pathogenic Escherichia coli clones carrying mcr‐1 among gulls underlines the need for st	31
Prophages carrying Zot toxins on different Vibrio genomes: A comprehensive assessment using multilayer	31
CARD‐FISH and prey tracer techniques reveal the role of overlooked flagellate groups as major bacterivores in freshwater hypertrophic shallow lakes	30
Life strategies and metabolic interactions of core microbes during thiosulphate‐based denitrification	30
Anaerobic methanotrophy is stimulated by graphene oxide in a brackish urban canal sediment	30
Fine‐scale mapping of physicochemical and microbial landscapes of the coral skeleton	29
Wolbachia in scale insects: a distinct pattern of infection frequencies and potential transfer routes via ant associates	29
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Biogeography of culturable marine bacteria from both poles reveals that ‘everything is not everywhere’ at the genomic level	29
Discovery of the non‐cosmopolitan lineages in Candidatus Thermoprofundales	29
Physiological stage drives fungal community dynamics and diversity in Leptospermum scoparium (mānu	29
New Insight Into the Mechanism of Nitrite Enhancement on Heterotrophic Nitrification and Aerobic Denitrification Bacterium in Gene Expression	28
Environmental vibrio phage–bacteria interaction networks reflect the genetic structure of host populations	28
Low phosphate mitigates cadmium‐induced oxidative stress in Saccharomyces cerevisiae by enhancing endogenous antioxidant defence system	28
Coral holobiont research needs spatial analyses at the microbial scale	28
Seasonal shifts in Fe‐acquisition strategies in Southern Ocean microbial communities revealed by metagenomics and autonomous sampling	28
Horizontal gene transfer (HGT) and microbial evolution	27
Unexpected role of electron‐transfer hub in direct degradation of pollutants by exoelectrogenic bacteria	27
Diversity and ecology of Radiolaria in modern oceans	27
Issue Information	27
Phytoplankton exudates provide full nutrition to a subset of accompanying heterotrophic bacteria via carbon, nitrogen and phosphorus allocation	26
The fitness benefit of pyoverdine cross‐feeding by Pseudomonas protegens Pf‐5	26
Distribution, causal agents, and infection dynamic of emerging ink disease of sweet chestnut in Southern Switzerland	26
Long‐range alteration of the physical environment mediates cooperation between Pseudomonas aeruginosa	26
Time after time: detecting annual patterns in stream bacterial biofilm communities	26
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Enteroviruses in Water: Epidemiology, Detection and Inactivation	26
Correction to “Preventing multiresistance: New insights for managing fungal adaptation”	25
Optimal Cell Length for Exploration and Exploitation in Chemotactic Planktonic Bacteria	25
Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics	25
A w Mel Wolbachia variant in Aedes aegypti from field‐colle	25
Nitrogen fertilization differentially affects the symbiotic capacity of two co‐occurring ectomycorrhizal species	24
Core rhizosphere microbiome of Panax notoginseng and its associations with belowground biomass and saponin contents	24

Environmental exposure more than plastic composition shapes marine microplastic‐associated bacterial communities in Pacific versus	24
The filamentous γ ‐prefoldin chaperone is not essential for growth and thermal adaptation in Methanocaldococcus jannaschii	24
Ferroptosis induced by the biocontrol agent Pythium oligandrum enhances soybean resistance to Phytophthora sojae	24
Unravelling Biodiversity, Assembly Mechanisms and Coexistence Patterns of Abundant and Rare Microeukaryotes in Water and Sediment: New Insights From Volcanic Lakes in Arxan Geopark	24
Novel oil‐associated bacteria in Arctic seawater exposed to different nutrient biostimulation regimes	24
Seasonal variation significantly influenced the stochasticity of community assembly of amphibian symbiotic bacteria	24
How Useful Are Plant Traits in Explaining Variation in Phyllosphere Microbial Abundance and Composition Across Hosts?	24
Substrate Effect on the Contribution of Ammonium and Urea to Marine Nitrification and Nitrous Oxide Production	23
Revealing human impact on natural ecosystems through soil bacterial DNA sampled from an archaeological site	23
How good are global DNA ‐based environmental surveys for detecting all protist diversity? Arcellinida as an example of biased representation	23
Highly Dynamic Archaeal and Bacterial Communities From the Surface to the Deep in the Atlantic Ocean	23
Metabolic Segregation and Functional Gene Clusters in Anaerobic Digestion Consortia	23
Cyanophage Infections in a Sponge Intracellular Cyanobacterial Symbiont	22
Widespread formation of intracellular calcium carbonates by the bloom‐forming cyanobacterium Microcystis	22
Countrywide inter‐epidemic region migration pattern suggests the role of southwestern population in wheat stripe rust epidemics in China	22
MoOpy2 is essential for fungal development, pathogenicity, and autophagy in Magnaporthe oryzae	22
Relationships between fluid mixing, biodiversity, and chemosynthetic primary productivity in Yellowstone hot springs	22
A novel soluble di‐iron monooxygenase from the soil bacterium Solimonas soli	22
Issue Information	22
Geography and environmental pressure are predictive of class‐specific radioresistance in black fungi	22
Influence of Seasonal Succession on Microbiological and Physiochemical Composition in Shallow Estuarine Sediments	22
Long‐term unsustainable patterns of development rather than recent deforestation caused the emergence of Orthocoronavirinae species	21
Environmental Microbiology and Environmental Microbiology Reports	21
Inhibition of nitrous oxide reduction in forest soil microcosms by different forms of methanobactin	20
The pH signalling transcription factor PacC modulate growth, development, stress response and path	20
Membrane lipid renovation in Pseudomonas aeruginosa ‐ implications for phage therapy?	20
Oxic–anoxic cycling promotes coupling between complex carbon metabolism and denitrification in woodchip bioreactors	20
Genome‐Scale Model of Rhizopus microsporus : Metabolic integration of a fungal holobiont with its bacterial and viral endosymbionts	20
Herbicides Have Minimal and Variable Effects on the Structure and Function of Bacterial Communities in Agricultural Soils	20
Phylogenomics, epigenomics, virulome and mobilome of Gram‐negative bacteria co‐resistant to carbapenems and polymyxins: a One Health systematic revie	20
The brown root rot fungus Phellinus noxius affects microbial communities in different root‐associated niches of Ficus	19
Genome and proteome analyses show the gaseous alkane degrader Desulfosarcina sp. strain BuS5 as an ext	19
Elevated O 3 concentrations alter the compartment‐specific microbial com	19
Climate dictates microbial community composition and diversity in Australian biological soil crusts (biocrusts)	19
Correction to “Five structural genes required for ceramide synthesis in Caulobacter and for bacter	19
Biodegradation in wastewater treatment plants: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	19
Linear scaling between microbial predator and prey densities in the global ocean	19
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Resource availability drives bacteria community resistance to pathogen invasion via altering bacterial pairwise interactions	19
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Water Quality and Land Use Shape Bacterial Communities Across 621 Canadian Lakes	19
Microbiome Stability Is Linked to Acropora Coral Thermotolerance in Northwestern Philippines	19
Biogeographical patterns of abundant and rare bacterial biospheres in paddy soils across East Asia	19
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Microscale imaging sheds light on species‐specific strategies for photo‐regulation and photo‐acclimation of microphytobenthic diatoms	18
Does diet breadth affect the complexity of the phytophagous insect microbiota? The case study of Chrysomelidae	18
Respiratory protein interactions in Dehalobacter sp. strain 8M	18
Exploring the Exclusive Isolation of Pseudomonas syringae in Peltigera	18
Uniform selective pressures within redox zones drive gradual changes in microbial community composition in hadal sediments	18
From ubiquity to specificity: The diverse functions of bacterial thioredoxin systems	18
Methylated cycloalkanes fuel a novel genus in the Porticoccaceae family (Ca. Reddybacter gen. nov)	18
CotG controls spore surface formation in response to the temperature of growth in Bacillus subtilis	18
An ArsRC fusion protein enhances arsenate sensing and detoxification	18
Novel virulent and temperate cyanophages predicted to infect Microcoleus associated with anatoxin‐producing benthic mats	18
Microbial Community of a Sandy Beach Subterranean Estuary is Spatially Heterogeneous and Impacted by Winter Waves	18
Clarifying Terminology in Microbial Ecology: A Call for Precision in Scientific Communication	18
Sarracenia pitcher plant‐associated microbial communities differ primarily by host species across a longitudinal gradient	18
Novel broad‐spectrum bacteriophages against Xanthomonas oryzae and their biocontrol potential in rice bacterial diseases	18
Experimental evidence that lignin‐modifying enzymes are essential for degrading plant cell wall lignin by Pleurotus ostreatus using <	18
Bacterial inoculation of Quercus pyrenaica trees alters co‐occurrence patterns but not the composition of the rhizosphere bacteriome in wild conditions	18
Selective Pressure Influences Inter‐Biome Dispersal in the Assembly of Saline Microbial Communities	18
Rehabilitation of the ‘bad guys’ for biocontrol applications	17
Isolation and characterization of a phage collection against Pseudomonas putida	17
Bacteriophages vehiculate a high amount of antibiotic resistance determinants of bacterial origin in the Orne River ecosystem	17
Genetic Analysis of Polyunsaturated Fatty Acids Biosynthesis Pathway Determines Four Distinct Thraustochytrid Types	17
Metagenomic evidence of a novel family of anammox bacteria in a subsea environment	17
Differential apicomplexan presence predicts thermal stress mortality in the Mediterranean coral Paramuricea clavata	17
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Adaptation of Listeria monocytogenes to perturbation of c‐di‐AMP metabolism underpins its role in osmo	17
Denitrification fractionates N and O isotopes of nitrate following a ratio independent of carbon sources in freshwaters	17
Multi‐omics analysis of antagonistic interactions among free‐living Pseudonocardia from diverse ecosystems	17
High salinity gradients and intermediate spatial scales shaped similar biogeographical and co‐occurrence patterns of microeukaryotes in a tropical freshwater‐saltwater ecosystem	17
Interactions between Bdellovibrio and like organisms and bacteria in biofilms: beyond predator–prey dynamics	17
Investigating the inoculum dynamics of Cladosporium on the surface of raspberry fruits and in the air	17
Employing a triple metabarcoding approach to differentiate active, dormant and dead microeukaryotes in sediments	17
Diverse viruses of marine archaea discovered using metagenomics	17
Toward a molecular understanding of fluoride stress in a model Pseudomonas strain	16
Kinetic modulation of bacterial hydrolases by microbial community structure in coastal waters	16
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Stability of a dominant sponge‐symbiont in spite of antibiotic‐induced microbiome disturbance	16

Production and utilization of pseudocobalamin in marine Synechococcus cultures and communities	16
Marine microbes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	16
Coexistence Theory for Microbial Ecology, and Vice Versa	16
Genetic Diversity and Anatoxin Profiles of Freshwater Benthic Cyanobacteria From Nova Scotia (Canada)	16
The cAMP‐PKA signalling pathway regulates hyphal growth, conidiation, trap morphogenesis, stress tolerance, and autophagy in A	16
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Issue Information	16
Microbial biofilms: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	16
Golgi‐localized calcium/manganese transporters FgGdt1 and FgPmr1 regulate fungal development and v	16
Identification of dominant taxa of sooty moulds and their impact on the leaf microbiome	16
Water deficit affects inter‐kingdom microbial connections in plant rhizosphere	16
Distinct strategies of the habitat generalists and specialists in sediment of Tibetan lakes	16
Hierarchical phylogenetic community assembly of soil protists in a temperate agricultural field	16
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Warm temperature inhibits cytoplasmic incompatibility induced by endosymbiotic Rickettsiella in spider hosts	16
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Bacterial Dynamics in Newly Settled Acropora kenti : Insights From Inoculations With Individual Probiotic Candidates	16
The 2‐methylpropene degradation pathway in Mycobacteriaceae family strains	16
Biosolids for safe land application: does wastewater treatment plant size matters when considering antibiotics, pollutants, microbiome, mobile genetic elements and associated resistance genes?	16
The tetrameric assembly of 2‐aminomuconic 6‐semialdehyde dehydrogenase is a functional requirement of cofactor NAD + b	16
Following the flow—Microbial ecology in surface‐ and groundwaters in the glacial forefield of a rapidly retreating glacier in Iceland	15
Isolation and characterization of a novel methanogen Methanosarcina hadiensis sp. nov. from subsurface Boom Clay pore water	15
Conditional filamentation as an adaptive trait of bacteria and its ecological significance in soils	15
Long‐term fertilization and tillage regimes have limited effects on structuring bacterial and denitrifier communities in a sandy loam UK soil	15
Cold Surface Waters of the Sub‐Antarctic Pacific Ocean Support High Cyanophage Abundances and Infection Levels	15
The bianchetto truffle ( Tuber borchii ) a lead‐resistant ectomycorrhizal fungus increases	15
Functional analysis of the apple fruit microbiome based on shotgun metagenomic sequencing of conventional and organic orchard samples	15
Plant salt tolerance: ACC deaminase‐producing endophytes change plant proteomic profiles	15
New Strains of the Deep Branching Streptophyte Streptofilum : Phylogenetic Position, Cell Biological and Ecophysiological Traits, and Description of	15
Comparative transcriptome analysis reveals different adaptation mechanisms for degradation of very long‐chain and normal long‐chain alkanes in Dietzia sp	15
Web Alert: Microbes and plastics: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	15
Tolerance to Herbicides and Resistance to Antibacterial Drugs of Bacterial Isolates From the Guarani Aquifer System (Brazil)	15
Continuous Rice Cultivation Increases Celery Yield by Enhancing Plant Beneficial Bacteria in Rice‐Celery Rotations	15
Warming Seawater Temperature and Nutrient Depletion Alters Microbial Community Composition on a Foundational Canopy Kelp Species	15
Prevalence of genetically similar Flavobacterium columnare phages across aquaculture environments reveals a strong potential for pathogen control	15
Experimental evolution of Pseudomonas putida under silver ion versus nanoparticle stress	15
Summer thaw duration is a strong predictor of the soil microbiome and its response to permafrost thaw in arctic tundra	15
Microplastic ingestion affects hydrogen production and microbiomes in the gut of the terrestrial isopod Porcellio scaber	15
Microecosystem of yak rumen on the Qinghai‐Tibetan Plateau is stable and is unaffected by soil or grass microbiota	15
Fluid dynamics and cell‐bound Psl polysaccharide allows microplastic capture, aggregation and subsequent sedimentation by Pseudomonas aeruginosa in water	15
The Influence of Symbiont Identity on the Proteomic and Metabolomic Responses of the Model Cnidarian Aiptasia to Thermal Stress	15
Issue Information	14
Adaptive Responses of Cyanobacteria to Phosphate Limitation: A Focus on Marine Diazotrophs	14
Wolbachia Feminises a Spider Host With Assistance From Co‐Infecting Symbionts	14
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Structural and functional microbial diversity in deadwood respond to decomposition dynamics	14
Can we manage microbial systems to enhance carbon storage?	14
Unravelling the genomic and environmental diversity of the ubiquitous Solirubrobacter	14
Continental‐scale niche differentiation of dominant topsoil archaea in drylands	14
Gene expression in the microbial consortia of colonial Microcystis aeruginosa ‐a potential buoyant particulate biofilm	14
The Bacillus phage SPβ and its relatives: a temperate phage model system reveals new strains, species,	14
Identification of putative coral pathogens in endangered Caribbean staghorn coral using machine learning	14
Polar flagellar wrapping and lateral flagella jointly contribute to Shewanella putrefaciens environmental spreading	14
Antarctic Geothermal Soils Exhibit an Absence of Regional Habitat Generalist Microorganisms	14
Antidepressants: A new front in the war against antibiotics resistance	14
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Gene Expression by a Model Fungus in the Ascomycota Provides Insight Into the Decay of Fungal Necromass	14
Drivers of Marine Phytoplankton Diversity and Connectivity in the Galápagos Archipelago Spanning an ENSO Cycle	14
Disentangle genus microdiversity within a complex microbial community by using a multi‐distance long‐read binning method: example of Candidatus Accumulib	14
The exometabolome of microbial communities inhabiting bare ice surfaces on the southern Greenland Ice Sheet	14
Metatranscriptomes reveal the diverse responses of Thaumarchaeota ecotypes to environmental variat	14
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Microplastics reduce soil microbial network complexity and ecological deterministic selection	13
Regulation of environmental stress responses: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	13
Photoelectron‐promoted metabolism of sulphate‐reducing microorganisms in substrate‐depleted environments	13
Uptake of inorganic and organic phosphorus compounds by two marine sponges and their associated bacterial communities in aquaria	13
Altering environmental conditions induce shifts in simulated deep terrestrial subsurface bacterial communities—Secretion of primary and secondary metabolites	13
Complex and flexible catabolism in Aromatoleum aromaticum   pCyN1	13
Bacteriophage–Bacteria Interactions Promote Ecological Multifunctionality in Compost‐Applied Soils	13
Seasonal dynamics in microbial trace metals transporters during phytoplankton blooms in the Southern Ocean	13
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Microdiversity in marine pelagic ammonia‐oxidizing archaeal populations in a Mediterranean long‐read metagenome	13
Geochemical factors impacting nitrifying communities in sandy sediments	13
Histone deacetylase SirE regulates development, DNA damage response and aflatoxin production in Aspergillus flavus	13
Growth of nitrite‐oxidizing Nitrospira and ammonia‐oxidizing Nitrosomonas in marine recirculating tricklin	13
Short‐term plastisphere colonization dynamics across six plastic types	13
Correction to “Mixed‐mode bacterial transmission in the common brooding coral Pocillopora acuta ”	13
Genome analysis and description of Tunturibacter gen. nov. expands the diversity of Terriglobia in tundra	13
Correction to “ Azospirillum baldaniorum Sp245 exploits Pseudomonas fluorescens A506	13
Genetic variation of Batrachochytrium dendrobatidis is linked to skin bacterial diversity in the Pacific treefrog Hyliola regilla<	13
The pan‐genome of Splendidus clade species in the family Vibrionaceae : Insights into evolution, adaptation, and pathogenicity	13
The secret life of plant‐beneficial rhizosphere bacteria: insects as alternative hosts	13
Aedes aegypti gut transcriptomes respond differently to microbiome transplants from field‐caught or laboratory‐reared mosquitoes	12
Temporal variations of Microsporidia diversity and discovery of new host–parasite interactions in a lake ecosystem	12
Some like it cold: the cellular organization and physiological limits of cold‐tolerant nitrite‐oxidizing Nitrotoga	12
Metabolism of key atmospheric volatile organic compounds by the marine heterotrophic bacterium Pelagibacter HTCC1062 ( SAR11	12
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Metaproteomics to understand how microbiota function: The crystal ball predicts a promising future	12
High‐Temporal Resolution of Microbial Food Web Dynamics and Structure During Phytoplankton Blooms in the Baltic Sea	12
Metabolic Insights Into Microbially Induced Calcite Formation by Bacillaceae for Application in Bio‐Based Construction Materials	12
Issue Information	12
Environmental paleomicrobiology: using DNA preserved in aquatic sediments to its full potential	12
Illuminating the dark metabolome of Pseudo‐nitzschia –microbiome associations	12
A polyethylene surrogate for microbial community enrichment and characterization	12