OOIR: Observatory of International Research

Papers

(The H4-Index of BMC Genomics is 37. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-05-01 to 2025-05-01.)

Article	Citations
SPLHRNMTF: robust orthogonal non-negative matrix tri-factorization with self-paced learning and dual hypergraph regularization for predicting miRNA-disease associations	142
Genome-wide QTL and eQTL mapping reveal genes associated with growth rate trait of the Pacific white shrimp (Litopenaeus vannamei)	111
Genome-wide identification, expression analysis of the R2R3-MYB gene family and their potential roles under cold stress in Prunus sibirica	101
Salinity-responsive histone PTMs identified in the gills and gonads of Mozambique tilapia (Oreochromis mossambicus)	96
A catalog of gene editing sites and genetic variations in editing sites in model organisms	93
Revised time estimation of the ancestral human chromosome 2 fusion	86
Genomic prediction with non-additive effects in beef cattle: stability of variance component and genetic effect estimates against population size	76
Insertion of an endogenous Jaagsiekte sheep retrovirus element into the BCO2 - gene abolishes its function and leads to yellow discoloration of adipose tissue in Norwegian Spælsau (Ovis aries)	73
Understanding host response to infectious salmon anaemia virus in an Atlantic salmon cell line using single-cell RNA sequencing	64
Unraveling the role of male reproductive tract and haemolymph in cantharidin-exuding Lydus trimaculatus and Mylabris variabilis (Coleoptera: Meloidae): a comparative transcriptomics approach	56
Effects of hibernation on two important contractile tissues in tibetan frogs, Nanorana parkeri: a perspective from transcriptomics and metabolomics approaches	55
Detecting antibody reactivities in Phage ImmunoPrecipitation Sequencing data	54
Genetic and genomic analysis of reproduction traits in holstein cattle using SNP chip data and imputed sequence level genotypes	54
Characterization of fine geographic scale population genetics in sugar kelp (Saccharina latissima) using genome-wide markers	53
The expression of RBPJ and its potential role in rheumatoid arthritis	52
De novo assembly and annotation of the singing mouse genome	50
Validation of reference genes for whole blood gene expression analysis in cord blood of preterm and full-term neonates and peripheral blood of healthy adults	49
HiFiBGC: an ensemble approach for improved biosynthetic gene cluster detection in PacBio HiFi-read metagenomes	47
From CFTR to a CF signalling network: a systems biology approach to study Cystic Fibrosis	46
Genome-wide identification and expression analysis of the NRT genes in Ginkgo biloba under nitrate treatment reveal the potential roles during calluses browning	46
Population genetic study of 17 Y-STR Loci of the Sorani Kurds in the Province of Sulaymaniyah, Iraq	45
Introgression of pigs in Taihu Lake region possibly contributed to the improvement of fertility in Danish Large White pigs	45
Alteration of chromosome structure impacts gene expressions implicated in pancreatic ductal adenocarcinoma cells	45
A putative scenario of how de novo protein-coding genes originate in the Saccharomyces cerevisiae lineage	44
Genome-wide identification and expression analysis reveals spinach brassinosteroid-signaling kinase (BSK) gene family functions in temperature stress response	44

Genome-wide identification and stress response analysis of cyclophilin gene family in apple (Malus × domestica)	42
peaksat: an R package for ChIP-seq peak saturation analysis	41
Biological factors in the synthetic construction of overlapping genes	41
Analysis of differentially expressed Sclerotinia sclerotiorum genes during the interaction with moderately resistant and highly susceptible chickpea lines	40
A targeted antibody-based array reveals a serum protein signature as biomarker for adolescent idiopathic scoliosis patients	40
Genomic insights into the antimicrobial resistance and virulence of Helicobacter pylori isolates from gastritis patients in Pereira, Colombia	40
Analysis of asymptomatic Drosophila models for ALS and SMA reveals convergent impact on functional protein complexes linked to neuro-muscular degeneration	39
Dynamic physiological and transcriptomic changes reveal memory effects of salt stress in maize	38
ProEnd: a comprehensive database for identifying HbYX motif-containing proteins across the tree of life	38
Small open reading frames: a comparative genetics approach to validation	38
Genome-wide identification and expression profile under abiotic stress of the barley non-specific lipid transfer protein gene family and its Qingke Orthologues	38
Genome-wide association study identifies key quantitative trait loci (QTL) for fruit morphometric traits in avocado (Persea spp.)	37
The effect of induced molting on the testicular physiological remodeling in no-semen roosters	37
Correction: Alterations in exosomal miRNA profile upon epithelial-mesenchymal transition in human lung cancer cell lines	37
Proteomic networks and related genetic variants associated with smoking and chronic obstructive pulmonary disease	37