OOIR: Observatory of International Research

Papers

(The H4-Index of BMC Genomics is 38. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-06-01 to 2025-06-01.)

Article	Citations
SPLHRNMTF: robust orthogonal non-negative matrix tri-factorization with self-paced learning and dual hypergraph regularization for predicting miRNA-disease associations	149
Genome-wide QTL and eQTL mapping reveal genes associated with growth rate trait of the Pacific white shrimp (Litopenaeus vannamei)	118
Genome-wide identification, expression analysis of the R2R3-MYB gene family and their potential roles under cold stress in Prunus sibirica	104
Salinity-responsive histone PTMs identified in the gills and gonads of Mozambique tilapia (Oreochromis mossambicus)	98
A catalog of gene editing sites and genetic variations in editing sites in model organisms	93
Genomic prediction with non-additive effects in beef cattle: stability of variance component and genetic effect estimates against population size	90
Unraveling the role of male reproductive tract and haemolymph in cantharidin-exuding Lydus trimaculatus and Mylabris variabilis (Coleoptera: Meloidae): a comparative transcriptomics approach	77
Effects of hibernation on two important contractile tissues in tibetan frogs, Nanorana parkeri: a perspective from transcriptomics and metabolomics approaches	75
Detecting antibody reactivities in Phage ImmunoPrecipitation Sequencing data	67
The expression of RBPJ and its potential role in rheumatoid arthritis	57
HiFiBGC: an ensemble approach for improved biosynthetic gene cluster detection in PacBio HiFi-read metagenomes	57
Characterization of fine geographic scale population genetics in sugar kelp (Saccharina latissima) using genome-wide markers	57
De novo assembly and annotation of the singing mouse genome	57
From CFTR to a CF signalling network: a systems biology approach to study Cystic Fibrosis	56
Genome-wide identification and expression analysis of the NRT genes in Ginkgo biloba under nitrate treatment reveal the potential roles during calluses browning	53
Alteration of chromosome structure impacts gene expressions implicated in pancreatic ductal adenocarcinoma cells	51
Population genetic study of 17 Y-STR Loci of the Sorani Kurds in the Province of Sulaymaniyah, Iraq	51
Genome-wide identification and expression analysis reveals spinach brassinosteroid-signaling kinase (BSK) gene family functions in temperature stress response	48
Genome-wide identification and stress response analysis of cyclophilin gene family in apple (Malus × domestica)	47
A putative scenario of how de novo protein-coding genes originate in the Saccharomyces cerevisiae lineage	47
peaksat: an R package for ChIP-seq peak saturation analysis	46
Biological factors in the synthetic construction of overlapping genes	46
Genomic insights into the antimicrobial resistance and virulence of Helicobacter pylori isolates from gastritis patients in Pereira, Colombia	45
Analysis of asymptomatic Drosophila models for ALS and SMA reveals convergent impact on functional protein complexes linked to neuro-muscular degeneration	42
A targeted antibody-based array reveals a serum protein signature as biomarker for adolescent idiopathic scoliosis patients	42

Genome-wide identification and expression profile under abiotic stress of the barley non-specific lipid transfer protein gene family and its Qingke Orthologues	41
ProEnd: a comprehensive database for identifying HbYX motif-containing proteins across the tree of life	40
The effect of induced molting on the testicular physiological remodeling in no-semen roosters	40
Proteomic networks and related genetic variants associated with smoking and chronic obstructive pulmonary disease	40
Genome-wide association study identifies key quantitative trait loci (QTL) for fruit morphometric traits in avocado (Persea spp.)	40
Assembly and comparative analysis of the complete mitochondrial genome of Brassica rapa var. Purpuraria	39
Correction to: Spatiotemporal expression profle of novel and known small RNAs throughout rice plant development focussing on seed tissues	39
Genome-wide identification of polyamine metabolism and ethylene synthesis genes in Chenopodium quinoa Willd. and their responses to low-temperature stress	39
Correction: Alterations in exosomal miRNA profile upon epithelial-mesenchymal transition in human lung cancer cell lines	39
Autophagy is involved in the toxicity of the biocontrol agent GC16 against Tetranychus pueraricola (Acari: Tetranychidae) based on transcriptomic and proteomic analyses	39
Large-scale integration of meta-QTL and genome-wide association study identifies genomic regions and candidate genes for photosynthetic efficiency traits in bread wheat	39
Genomic consequences of intensive inbreeding in miniature inbred pigs	38
Metabolomics, phytohormone and transcriptomics strategies to reveal the mechanism of barley heading date regulation to responds different photoperiod	38