BMC Genomics

Article	Citations
Pathway size matters: the influence of pathway granularity on over-representation (enrichment analysis) statistics	157
Seamless integration of image and molecular analysis for spatial transcriptomics workflows	147
A review of deep learning applications for genomic selection	126
Precursor peptide-targeted mining of more than one hundred thousand genomes expands the lanthipeptide natural product family	101
Illuminating the dark side of the human transcriptome with long read transcript sequencing	94
An empirical comparison of population genetic analyses using microsatellite and SNP data for a species of conservation concern	86
A rapid, cost-effective tailed amplicon method for sequencing SARS-CoV-2	75
Refining the transcriptome of the human malaria parasite Plasmodium falciparum using amplification-free RNA-seq	74
HiFiAdapterFilt, a memory efficient read processing pipeline, prevents occurrence of adapter sequence in PacBio HiFi reads and their negative impacts on genome assembly	71
Assembly and comparative analysis of the complete mitochondrial genome of Suaeda glauca	70
MutationalPatterns: the one stop shop for the analysis of mutational processes	68
Phylogenomics of expanding uncultured environmental Tenericutes provides insights into their pathogenicity and evolutionary relationship with Bacilli	64
Genomic architecture of phenotypic extremes in a wild cervid	61
Pango lineage designation and assignment using SARS-CoV-2 spike gene nucleotide sequences	60
Cell-specific characterization of the placental methylome	59
A comprehensive evaluation of long read error correction methods	58
Fulvic acid ameliorates drought stress-induced damage in tea plants by regulating the ascorbate metabolism and flavonoids biosynthesis	58
The alcohol dehydrogenase gene family in sugarcane and its involvement in cold stress regulation	58
Daring to be differential: metabarcoding analysis of soil and plant-related microbial communities using amplicon sequence variants and operational taxonomical units	58
Siberian larch (Larix sibirica Ledeb.) mitochondrial genome assembled using both short and long nucleotide sequence reads is currently the largest known mitogenome	56
Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis	54
GWAS revealed effect of genotype × environment interactions for grain yield of Nebraska winter wheat	53
Analysis of six chloroplast genomes provides insight into the evolution of Chrysosplenium (Saxifragaceae)	53
Unlocking the efficiency of genomics laboratories with robotic liquid-handling	52
Chloroplast genome variation and phylogenetic relationships of Atractylodes species	51

spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data	50
Progress in quickly finding orthologs as reciprocal best hits: comparing blast, last, diamond and MMseqs2	47
AMPlify: attentive deep learning model for discovery of novel antimicrobial peptides effective against WHO priority pathogens	46
Genome-wide identification and expression analysis of AP2/ERF transcription factors in sugarcane (Saccharum spontaneum L.)	46
Genome-wide identification of R2R3-MYB family in wheat and functional characteristics of the abiotic stress responsive gene TaMYB344	45
Genome-wide identification and characterization of ABA receptor PYL gene family in rice	45
Comparative chloroplast genome analysis of Artemisia (Asteraceae) in East Asia: insights into evolutionary divergence and phylogenomic implications	44
Benchmark of 16S rRNA gene amplicon sequencing using Japanese gut microbiome data from the V1–V2 and V3–V4 primer sets	44
Genome-wide identification of ATP binding cassette (ABC) transporter and heavy metal associated (HMA) gene families in flax (Linum usitatissimum L.)	44
Comparative chloroplast genomes: insights into the evolution of the chloroplast genome of Camellia sinensis and the phylogeny of Camellia	43
Genome-wide association analyses identify known and novel loci for teat number in Duroc pigs using single-locus and multi-locus models	43
Metabolome and transcriptome analyses of the molecular mechanisms of flower color mutation in tobacco	43
A positive correlation between GC content and growth temperature in prokaryotes	43
Molecular genetic analysis of spring wheat core collection using genetic diversity, population structure, and linkage disequilibrium	43
GalaxyTrakr: a distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians	43
Complete chloroplast genome sequence of Barleria prionitis, comparative chloroplast genomics and phylogenetic relationships among Acanthoideae	42
A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues	42
The transcriptomic responses of Atlantic salmon (Salmo salar) to high temperature stress alone, and in combination with moderate hypoxia	42
Systematic comparison of high-throughput single-cell RNA-seq methods for immune cell profiling	41
Assessing genomic diversity and signatures of selection in Jiaxian Red cattle using whole-genome sequencing data	41
RBPsuite: RNA-protein binding sites prediction suite based on deep learning	41
Whole genome comparisons reveal panmixia among fall armyworm (Spodoptera frugiperda) from diverse locations	40
Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis	40
Long-read metagenomics retrieves complete single-contig bacterial genomes from canine feces	40
Transcriptome analysis reveals molecular mechanisms responsive to acute cold stress in the tropical stenothermal fish tiger barb (Puntius tetrazona)	40
The whole-transcriptome landscape of muscle and adipose tissues reveals the ceRNA regulation network related to intramuscular fat deposition in yak	39
Optimized breeding strategies to harness genetic resources with different performance levels	39
Effect of recent and ancient inbreeding on production and fertility traits in Canadian Holsteins	39
Deep learning assisted multi-omics integration for survival and drug-response prediction in breast cancer	39
Differential expression pattern of the proteome in response to cadmium stress based on proteomics analysis of wheat roots	38
Genetic mapping for agronomic traits in a MAGIC population of common bean (Phaseolus vulgaris L.) under drought conditions	38
Multi-trait GWAS using imputed high-density genotypes from whole-genome sequencing identifies genes associated with body traits in Nile tilapia	38
Benchmarking hybrid assembly approaches for genomic analyses of bacterial pathogens using Illumina and Oxford Nanopore sequencing	38
Intron and gene size expansion during nervous system evolution	38
UniBind: maps of high-confidence direct TF-DNA interactions across nine species	37
Combined Transcriptome and Metabolome analysis of Pitaya fruit unveiled the mechanisms underlying Peel and pulp color formation	37
Combined transcriptome and proteome profiling of the pancreatic β-cell response to palmitate unveils key pathways of β-cell lipotoxicity	36
De novo transcriptome sequencing and analysis of salt-, alkali-, and drought-responsive genes in Sophora alopecuroides	36
Identification of ferroptosis genes in immune infiltration and prognosis in thyroid papillary carcinoma using network analysis	35
Authoritative subspecies diagnosis tool for European honey bees based on ancestry informative SNPs	35
Multi-omics analysis reveals the glycolipid metabolism response mechanism in the liver of genetically improved farmed Tilapia (GIFT, Oreochromis niloticus) under hypoxia stress	35
Antimicrobial activity screening of rhizosphere soil bacteria from tomato and genome-based analysis of their antimicrobial biosynthetic potential	35
Comparing low-pass sequencing and genotyping for trait mapping in pharmacogenetics	34
Genome-wide association analysis unveils novel QTLs for seminal root system architecture traits in Ethiopian durum wheat	34
Deep in the Bowel: Highly Interpretable Neural Encoder-Decoder Networks Predict Gut Metabolites from Gut Microbiome	34
Comprehensive analysis of NAC transcription factor family uncovers drought and salinity stress response in pearl millet (Pennisetum glaucum)	33
Differences between human and chimpanzee genomes and their implications in gene expression, protein functions and biochemical properties of the two species	33
mitch: multi-contrast pathway enrichment for multi-omics and single-cell profiling data	33
Dynamic expression of Ralstonia solanacearum virulence factors and metabolism-controlling genes during plant infection	33
Intellectual disability genomics: current state, pitfalls and future challenges	32

Genome compartmentalization predates species divergence in the plant pathogen genus Zymoseptoria	32
The complete mitochondrial genome of okra (Abelmoschus esculentus): using nanopore long reads to investigate gene transfer from chloroplast genomes and rearrangements of mitochondrial DNA molecules	32
Chloroplast phylogenomics and divergence times of Lagerstroemia (Lythraceae)	31
Gene co-expression network analysis reveals key pathways and hub genes in Chinese cabbage (Brassica rapa L.) during vernalization	31
Evaluation of the efficiency of genomic versus pedigree predictions for growth and wood quality traits in Scots pine	31
Identification, evolution, expression, and docking studies of fatty acid desaturase genes in wheat (Triticum aestivum L.)	31
Genomic analysis of worldwide sheep breeds reveals PDGFD as a major target of fat-tail selection in sheep	31
Breeding history and candidate genes responsible for black skin of Xichuan black-bone chicken	31
Prevalence, antibiotic resistance, virulence and genetic diversity of Staphylococcus aureus isolated from bulk tank milk samples of U.S. dairy herds	30
Genome wide association mapping for heat tolerance in sub-tropical maize	30
Genome-wide identification of the MADS-box transcription factor family in autotetraploid cultivated alfalfa (Medicago sativa L.) and expression analysis under abiotic stress	30
Interspecific analysis of diurnal gene regulation in panicoid grasses identifies known and novel regulatory motifs	30
Transcriptomic and biochemical investigations support the role of rootstock-scion interaction in grapevine berry quality	29
Transcriptomic and proteomic analyses of ovarian follicles reveal the role of VLDLR in chicken follicle selection	29
HAK/KUP/KT family potassium transporter genes are involved in potassium deficiency and stress responses in tea plants (Camellia sinensis L.): expression and functional analysis	29
Comparative transcriptome combined with metabolome analyses revealed key factors involved in nitric oxide (NO)-regulated cadmium stress adaptation in tall fescue	29
Differential regulation of intramuscular fat and abdominal fat deposition in chickens	29
Genome-wide identification and expression analysis of the bHLH transcription factor family and its response to abiotic stress in sorghum [Sorghum bicolor (L.) Moench]	29
Combined nanopore adaptive sequencing and enzyme-based host depletion efficiently enriched microbial sequences and identified missing respiratory pathogens	29
Whole-genome analysis of probiotic product isolates reveals the presence of genes related to antimicrobial resistance, virulence factors, and toxic metabolites, posing potential health risks	29
Comparative chloroplast genome analysis of Impatiens species (Balsaminaceae) in the karst area of China: insights into genome evolution and phylogenomic implications	28
Genome-wide analysis of the bZIP gene family in Chinese jujube (Ziziphus jujuba Mill.)	28
Complementary transcriptomic and proteomic analyses reveal the cellular and molecular processes that drive growth and development of Fasciola hepatica in the host liver	28
Genome-wide identification and characterization of long non-coding RNAs conferring resistance to Colletotrichum gloeosporioides in walnut (Juglans regia)	28
Systematic analysis of the Capsicum ERF transcription factor family: identification of regulatory factors involved in the regulation of species-specific metabolites	28
Genome-wide investigation and expression profiling of polyphenol oxidase (PPO) family genes uncover likely functions in organ development and stress responses in Populus trichocarpa	28
MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction	28
Proteomic responses to progressive dehydration stress in leaves of chickpea seedlings	28
Genetic diversity analysis of a flax (Linum usitatissimum L.) global collection	28
Integrated analysis of the responses of a circRNA-miRNA-mRNA ceRNA network to heat stress in rainbow trout (Oncorhynchus mykiss) liver	27
Identification and characterization of QTLs for fruit quality traits in peach through a multi-family approach	27
A meta-analysis of genome-wide association studies for average daily gain and lean meat percentage in two Duroc pig populations	27
SDNN-PPI: self-attention with deep neural network effect on protein-protein interaction prediction	27
Distinctive gene and protein characteristics of extremely piezophilic Colwellia	27
LABRAT reveals association of alternative polyadenylation with transcript localization, RNA binding protein expression, transcription speed, and cancer survival	27
Systematic benchmark of state-of-the-art variant calling pipelines identifies major factors affecting accuracy of coding sequence variant discovery	27
Chloroplast phylogenomic insights into the evolution of Distylium (Hamamelidaceae)	27
Genome-wide identification, expression analysis, and functional study of the GRAS transcription factor family and its response to abiotic stress in sorghum [Sorghum bicolor (L.) Moench]	27
Transcriptome analysis reveals mechanism of early ripening in Kyoho grape with hydrogen peroxide treatment	27
Integrated analysis of lncRNA-miRNA-mRNA ceRNA network in human aortic dissection	27
Phylogenetic analysis of the caspase family in bivalves: implications for programmed cell death, immune response and development	26
The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool	26
Genome of the destructive oomycete Phytophthora cinnamomi provides insights into its pathogenicity and adaptive potential	26
In vitro resynthesis of lichenization reveals the genetic background of symbiosis-specific fungal-algal interaction in Usnea hakonensis	26
Automatic identification and annotation of MYB gene family members in plants	26
Putative genes in alkaloid biosynthesis identified in Dendrobium officinale by correlating the contents of major bioactive metabolites with genes expression between Protocorm-like bodies and leaves	26
Genome-wide association analysis reveals genetic variations and candidate genes associated with salt tolerance related traits in Gossypium hirsutum	26
Dense time-course gene expression profiling of the Drosophila melanogaster innate immune response	26
De novo transcriptome in roots of switchgrass (Panicum virgatum L.) reveals gene expression dynamic and act network under alkaline salt stress	26
A complete mitochondrial genome for fragrant Chinese rosewood (Dalbergia odorifera, Fabaceae) with comparative analyses of genome structure and intergenomic sequence transfers	26
Identification of diverse cell populations in skeletal muscles and biomarkers for intramuscular fat of chicken by single-cell RNA sequencing	26
Virulence characterization and comparative genomics of Listeria monocytogenes sequence type 155 strains	26
Integrative analysis of circRNAs, miRNAs, and mRNAs profiles to reveal ceRNAs networks in chicken intramuscular and abdominal adipogenesis	26
ACEP: improving antimicrobial peptides recognition through automatic feature fusion and amino acid embedding	26
Chloroplast genome sequence of Chongming lima bean (Phaseolus lunatus L.) and comparative analyses with other legume chloroplast genomes	26
Altered synthesis of genes associated with short-chain fatty acids in the gut of patients with atrial fibrillation	26
Metabolic and transcriptomic analysis of two Cucurbita moschata germplasms throughout fruit development	25
Identification and characterization of HAK/KUP/KT potassium transporter gene family in barley and their expression under abiotic stress	25
Predicting tumor response to drugs based on gene-expression biomarkers of sensitivity learned from cancer cell lines	25
Gene expression predictions and networks in natural populations supports the omnigenic theory	25
A comprehensive survey of integron-associated genes present in metagenomes	25
Runs of homozygosity analysis of South African sheep breeds from various production systems investigated using OvineSNP50k data	25
Determining extracellular vesicles properties and miRNA cargo variability in bovine milk from healthy cows and cows undergoing subclinical mastitis	25
Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758)	25
Sperm miRNAs— potential mediators of bull age and early embryo development	25
Multiomics study of a heterotardigrade, Echinisicus testudo, suggests the possibility of convergent evolution of abundant heat-soluble proteins in Tardigrada	25
pH-dependent transcriptional profile changes in iron-deficient Arabidopsis roots	25
The complete chloroplast genome of Stauntonia chinensis and compared analysis revealed adaptive evolution of subfamily Lardizabaloideae species in China	25
Genome-wide identification of the 14–3-3 gene family and its participation in floral transition by interacting with TFL1/FT in apple	25
Three metabolic pathways are responsible for the accumulation and maintenance of high AsA content in kiwifruit (Actinidia eriantha)	25
Genome-wide detection of CNV regions and their potential association with growth and fatness traits in Duroc pigs	24
Metagenomic data-mining reveals enrichment of trimethylamine-N-oxide synthesis in gut microbiome in atrial fibrillation patients	24
Causal mutations from adaptive laboratory evolution are outlined by multiple scales of genome annotations and condition-specificity	24
Complete mitochondrial genomes of three Mangifera species, their genomic structure and gene transfer from chloroplast genomes	24
Genome-wide characterization of 2-oxoglutarate and Fe(II)-dependent dioxygenase family genes in tomato during growth cycle and their roles in metabolism	24
Comparative analysis of the transcriptomes of EDL, psoas, and soleus muscles from mice	24
The effect of methanol fixation on single-cell RNA sequencing data	24
Genome-wide analysis of the serine carboxypeptidase-like protein family in Triticum aestivum reveals TaSCPL184-6D is involved in abiotic stress response	24
Characterization of bacterial communities associated with the pinewood nematode insect vector Monochamus alternatus Hope and the host tree Pinus massoniana	24
A multi-breed GWAS for morphometric traits in four Beninese indigenous cattle breeds reveals loci associated with conformation, carcass and adaptive traits	24

Genome mining and UHPLC–QTOF–MS/MS to identify the potential antimicrobial compounds and determine the specificity of biosynthetic gene clusters in Bacillus subtilis NCD-2	24
Comparative pangenomics: analysis of 12 microbial pathogen pangenomes reveals conserved global structures of genetic and functional diversity	24
Genome-wide study of pineapple (Ananas comosus L.) bHLH transcription factors indicates that cryptochrome-interacting bHLH2 (AcCIB2) participates in flowering time regulation and abiotic stress respon	24
Genome-wide identification and expression analysis of the AT-hook Motif Nuclear Localized gene family in soybean	24
Transcriptome analysis reveals the molecular mechanisms of heterosis on thermal resistance in hybrid abalone	24
Genome-wide association study identifies favorable SNP alleles and candidate genes for frost tolerance in pea	23
Genome-wide analysis of R2R3-MYB transcription factors family in the autopolyploid Saccharum spontaneum: an exploration of dominance expression and stress response	23
Genome-wide identification and expression profiling analysis of maize AP2/ERF superfamily genes reveal essential roles in abiotic stress tolerance	23
A high-continuity and annotated tomato reference genome	23
A highly contiguous genome assembly of Brassica nigra (BB) and revised nomenclature for the pseudochromosomes	23
Re-examination of two diatom reference genomes using long-read sequencing	23
Temporal changes in DNA methylation and RNA expression in a small song bird: within- and between-tissue comparisons	23
Linkage mapping and genome-wide association study reveals conservative QTL and candidate genes for Fusarium rot resistance in maize	23
Complete chloroplast genome of Stephania tetrandra (Menispermaceae) from Zhejiang Province: insights into molecular structures, comparative genome analysis, mutational hotspots and phylogenetic relati	23
Characteristics of the completed chloroplast genome sequence of Xanthium spinosum: comparative analyses, identification of mutational hotspots and phylogenetic implications	23
Moose genomes reveal past glacial demography and the origin of modern lineages	23
DNA methylation and its effects on gene expression during primary to secondary growth in poplar stems	23
Integrating RNA-Seq with GWAS reveals novel insights into the molecular mechanism underpinning ketosis in cattle	23
Transcriptome-wide study revealed m6A regulation of embryonic muscle development in Dingan goose (Anser cygnoides orientalis)	23
Genome-wide characterization and expression analysis of geranylgeranyl diphosphate synthase genes in cotton (Gossypium spp.) in plant development and abiotic stresses	23
Efficient and cost-effective bacterial mRNA sequencing from low input samples through ribosomal RNA depletion	23
Chromosome-level genome assembly of grass carp (Ctenopharyngodon idella) provides insights into its genome evolution	23
Genome-wide detection of CNVs and their association with performance traits in broilers	22
Inferring and analyzing gene regulatory networks from multi-factorial expression data: a complete and interactive suite	22
Genetic architecture and genomic selection of female reproduction traits in rainbow trout	22
Protein acetylation in mitochondria plays critical functions in the pathogenesis of fatty liver disease	22
Comparative transcriptome analysis reveals that PCK1 is a potential gene affecting IMF deposition in buffalo	22
Genome-wide characterization of the GRF family and their roles in response to salt stress in Gossypium	22
Reconstruction of ancient homeobox gene linkages inferred from a new high-quality assembly of the Hong Kong oyster (Magallana hongkongensis) genome	22
Transcriptome analysis and molecular mechanism of linseed (Linum usitatissimum L.) drought tolerance under repeated drought using single-molecule long-read sequencing	22
Dual indexed library design enables compatibility of in-Drop single-cell RNA-sequencing with exAMP chemistry sequencing platforms	22
Genome-wide identification of MAPK gene family members in Fagopyrum tataricum and their expression during development and stress responses	22
Comparative analyses of copy number variations between Bos taurus and Bos indicus	22
Genome-wide identification of the histone acetyltransferase gene family in Triticum aestivum	22
Comprehensive analysis of differentially expressed circRNAs and ceRNA regulatory network in porcine skeletal muscle	22
Whole-genome homozygosity mapping reveals candidate regions affecting bull fertility in US Holstein cattle	22
New insights into the evolution and functional divergence of the CIPK gene family in Saccharum	22
Increased abundance of secreted hydrolytic enzymes and secondary metabolite gene clusters define the genomes of latent plant pathogens in the Botryosphaeriaceae	22
mRNA profile provides novel insights into stress adaptation in mud crab megalopa, Scylla paramamosain after salinity stress	22
Genome-wide characterization and analysis of WRKY transcription factors in Panax ginseng	22
Comparison of SARS-CoV-2 sequencing using the ONT GridION and the Illumina MiSeq	22
A genome-scale CRISPR interference guide library enables comprehensive phenotypic profiling in yeast	22
Genome-wide characterization of the WAK gene family and expression analysis under plant hormone treatment in cotton	22
Long non-coding RNA pairs to assist in diagnosing sepsis	22
The BBX gene family in Moso bamboo (Phyllostachys edulis): identification, characterization and expression profiles	22
Transcriptome and metabolome analysis reveals anthocyanin biosynthesis pathway associated with ramie (Boehmeria nivea (L.) Gaud.) leaf color formation	22
B chromosomes of multiple species have intense evolutionary dynamics and accumulated genes related to important biological processes	22
Characterization of cotton ARF factors and the role of GhARF2b in fiber development	22
The taxonomic distribution of histamine-secreting bacteria in the human gut microbiome	22
Genome-wide identification, characterization, and expression analysis of the NAC transcription factor family in orchardgrass (Dactylis glomerata L.)	22
Genome-wide identification and transcript profiles of walnut heat stress transcription factor involved in abiotic stress	21
Dynamic transcriptome and metabolome analyses of two types of rice during the seed germination and young seedling growth stages	21
Temporal salt stress-induced transcriptome alterations and regulatory mechanisms revealed by PacBio long-reads RNA sequencing in Gossypium hirsutum	21
The eukaryotic MEP-pathway genes are evolutionarily conserved and originated from Chlaymidia and cyanobacteria	21
Identification and evolution analysis of the JAZ gene family in maize	21
LPS-treatment of bovine endometrial epithelial cells causes differential DNA methylation of genes associated with inflammation and endometrial function	21
Genome sequencing of Inonotus obliquus reveals insights into candidate genes involved in secondary metabolite biosynthesis	21
Genomic variation among closely related Vibrio alginolyticus strains is located on mobile genetic elements	21
Understanding the early cold response mechanism in IR64 indica rice variety through comparative transcriptome analysis	21
An in-depth bioinformatic analysis of the novel recombinant lumpy skin disease virus strains: from unique patterns to established lineage	21
Transcriptome sequencing and metabolome analysis of food habits domestication from live prey fish to artificial diets in mandarin fish (Siniperca chuatsi)	21
Genomic epidemiology of SARS-CoV-2 in Esteio, Rio Grande do Sul, Brazil	21
Comparative Analysis of Genome of Ehrlichia sp. HF, a Model Bacterium to Study Fatal Human Ehrlichiosis	21
Uterine transcriptome analysis reveals mRNA expression changes associated with the ultrastructure differences of eggshell in young and aged laying hens	21
High-resolution profile of transcriptomes reveals a role of alternative splicing for modulating response to nitrogen in maize	21
Transcriptome of different fruiting stages in the cultivated mushroom Cyclocybe aegerita suggests a complex regulation of fruiting and reveals enzymes putatively involved in fungal oxylipin biosynthes	20
Changes in gene body methylation do not correlate with changes in gene expression in Anthozoa or Hexapoda	20
Complete chloroplast genomes of Rubus species (Rosaceae) and comparative analysis within the genus	20
LongGF: computational algorithm and software tool for fast and accurate detection of gene fusions by long-read transcriptome sequencing	20
SARS-CoV-2 early infection signature identified potential key infection mechanisms and drug targets	20
Genome-wide identification and expression profiling of DREB genes in Saccharum spontaneum	20
Fusarium head blight resistance in European winter wheat: insights from genome-wide transcriptome analysis	20
Genome-wide identification of the DUF668 gene family in cotton and expression profiling analysis of GhDUF668 in Gossypium hirsutum under adverse stress	20
Genome-wide association analysis reveals that EDNRB2 causes a dose-dependent loss of pigmentation in ducks	20
The micro-RNA content of unsorted cryopreserved bovine sperm and its relation to the fertility of sperm after sex-sorting	20
Genome-wide patterns of differentiation within and among U.S. commercial honey bee stocks	20
Systemic paralogy and function of retinal determination network homologs in arachnids	20
New insights into the Manila clam and PAMPs interaction based on RNA-seq analysis of clam through in vitro challenges with LPS, PGN, and poly(I:C)	20
Genome-wide identification and functional analysis of the TIFY gene family in the response to multiple stresses in Brassica napus L.	20
Accurate prediction of DNA N4-methylcytosine sites via boost-learning various types of sequence features	20
Mapping the m1A, m5C, m6A and m7G methylation atlas in zebrafish brain under hypoxic conditions by MeRIP-seq	20
RNA-Seq transcriptome reveals different molecular responses during human and mouse oocyte maturation and fertilization	20
QTL mapping of root traits in wheat under different phosphorus levels using hydroponic culture	20
A comparative genomics study of neuropeptide genes in the cnidarian subclasses Hexacorallia and Ceriantharia	20
Exploring the possibility of predicting human head hair greying from DNA using whole-exome and targeted NGS data	20
Genome-wide identification and expression analysis of the xyloglucan endotransglucosylase/hydrolase gene family in poplar	20
Transcriptome analysis reveals rapid defence responses in wheat induced by phytotoxic aphid Schizaphis graminum feeding	20
Genetic dissection of an allotetraploid interspecific CSSLs guides interspecific genetics and breeding in cotton	20
Genome-wide identification of the class III POD gene family and their expression profiling in grapevine (Vitis vinifera L)	20
Effects of growth years on ginsenoside biosynthesis of wild ginseng and cultivated ginseng	20
TarDB: an online database for plant miRNA targets and miRNA-triggered phased siRNAs	20
Characterization of nucleic acids from extracellular vesicle-enriched human sweat	20
Duplex sequencing identifies genomic features that determine susceptibility to benzo(a)pyrene-induced in vivo mutations	20
The genomic basis of the Streptococcus thermophilus health-promoting properties	20
Transcriptomic profiling revealed key signaling pathways for cold tolerance and acclimation of two carp species	20