OOIR: Observatory of International Research

Papers

(The H4-Index of Journal of Biomedical Informatics is 45. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-08-01 to 2026-08-01.)

Article	Citations
From translational bioinformatics computational methodologies to personalized medicine	174
Learning the progression patterns of treatments using a probabilistic generative model	138
A Syntax-enhanced model based on category keywords for biomedical relation extraction	122
Integrating Mendelian randomization and literature-mined evidence for breast cancer risk factors	117
MAM: Flexible Monte-Carlo Agent based model for modelling COVID-19 spread	99
ViPal: A framework for virulence prediction of influenza viruses with prior viral knowledge using genomic sequences	97
Realistic 3D infant head surfaces augmentation to improve AI-based diagnosis of cranial deformities	91
Predicting non-coding RNA function using Artificial Intelligence	91
Leveraging heterogeneous tabular of EHRs with prompt learning for clinical prediction	86
CBFI: A multi-layer gene network key node identification algorithm integrating structural-biological features and dynamic regulatory weights	83
Explainable multimodal deep learning models for variable-length sequences in critically ill patients	78
Corrigendum to “A pipeline for harmonising NHS Scotland laboratory data to enable national-level analyses” [J. Biomed. Inform. 2025 Feb;162:104771. https://doi.org/10.1016/j.jbi.2024.104771. Epub 2025	75
Context-Aware adaptive normalization LSTM (CAAN-LSTM) for immunotherapy decision support in cancer clinical data analysis	75
Measuring disease burden with individual cumulative incidence in patients with cirrhosis	72
Joint modeling of mixed outcomes using a rank-based sparse neural network	70
Development of a 3-Step theory of suicide ontology to facilitate 3ST factor extraction from clinical progress notes	69
Discontinuous named entities in clinical text: A systematic literature review	67
A self-supervised language model selection strategy for biomedical question answering	67
Predicting relations between SOAP note sections: The value of incorporating a clinical information model	66
From centralized to ad-hoc knowledge base construction for hypotheses generation	66
Towards Reliable Clinical Data: A Collaborative Data Governance Architecture with Lifecycle Integration	66
TransDiffECG: Semantically controllable ECG synthesis via transformer-based diffusion modeling	65
Towards a unified search: Improving PubMed retrieval with full text	65
Multi-agent norm perception and induction in distributed healthcare	62
Graph-based abstractive biomedical text summarization	59

Informative missingness: What can we learn from patterns in missing laboratory data in the electronic health record?	57
One-shot distributed algorithms for addressing heterogeneity in competing risks data across clinical sites	56
Causal intervention validation of gene regulatory signals in scGPT	56
Introducing the BlendedICU dataset, the first harmonized, international intensive care dataset	55
Hypothesis-driven modeling of the human lung–ventilator system: A characterization tool for Acute Respiratory Distress Syndrome research	53
Digital Phenotyping of Mental Health using multimodal sensing of multiple situations of interest: A Systematic Literature Review	53
A robust phenotype-driven likelihood ratio analysis approach assisting interpretable clinical diagnosis of rare diseases	53
A multimodal machine learning algorithm improved diagnostic accuracy for otitis media in a school aged Aboriginal population	52
Creating a computer assisted ICD coding system: Performance metric choice and use of the ICD hierarchy	51
Cover 1/Spine	51
Detection of valvular heart diseases combining orthogonal non-negative matrix factorization and convolutional neural networks in PCG signals	51
fmi-ii: Table of Contents	50
MDD-MARF: a multimodal depression detection model based on multi-level attention mechanism and residual fusion	50
A fuzzy-based framework for diagnosing esophageal mobility disorder using high-resolution manometry	50
A federated learning framework for ethical dynamic treatment allocation across heterogeneous hospitals	49
A study of large language models for patient information extraction: Model architecture, fine-tuning strategy, and multi-task instruction tuning	48
Graph embedding-based link prediction for literature-based discovery in Alzheimer’s Disease	48
Network-based analysis of Alzheimer’s Disease genes using multi-omics network integration with graph diffusion	48
GERNERMED++: Semantic annotation in German medical NLP through transfer-learning, translation and word alignment	45
Clustering-based fusion for medical information retrieval	45