OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Proteome Research is 7. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-01-01 to 2026-01-01.)

Article	Citations
Margaret Dayhoff: A Personal Memoir	238
Systematic Survey of the Regulatory Networks of the Long Noncoding RNA BANCR in Cervical Cancer Cells	192
A Method to Estimate the Distribution of Proteins across Multiple Compartments Using Data from Quantitative Proteomics Subcellular Fractionation Experiments	184
Canadian Proteomics: A Journey across the Country Highlights Discovery and Innovation	169
Targeted Proteomics Profiling for Biomarker Discovery in Glaucoma Using the Olink Proteomics Platform	108
Reverse Phase Proteomic Array Profiling of Asparagine Synthetase Expression in Newly Diagnosed Acute Myeloid Leukemia	90
Integration of Automatic Text Mining and Genomic and Proteomic Analysis to Unravel Prostate Cancer Biomarkers	87
Time-Resolved Multiomics Illustrates Host and Gut Microbe Interactions during Salmonella Infection	86
Longitudinal Proteomic Changes in HCT 116 Colon Cancer Spheroids During Growth	84
Lipidomic Network Analysis Reveals Amyloid-β-Induced Lysosomal Lipid Accumulation in the Cortex and Hippocampus of 5xFAD Mice	80
An Improved Metabolomics Workflow Enables Untargeted Data Acquisition and Targeted Data Analysis Using Liquid Chromatography–Mass Spectrometry	80
Issue Publication Information	68
Evaluation of the Suitability of Dried Saliva Spots for In-Depth Proteome Analyses for Clinical Applications	67
Fast and Memory-Efficient Searching of Large-Scale Mass Spectrometry Data Using Tide	64
Uncovering Hidden Members and Functions of the Soil Microbiome Using De Novo Metaproteomics	64
Brief Evaluation of Olink Reveal Proximity Extension Assay for High-Throughput Proteomics: A Case Study Using NIST SRM 1950 and Two Spike-In Protein Standards	64
Dynamic Phosphotyrosine-Dependent Signaling Profiling in Living Cells by Two-Dimensional Proximity Proteomics	62
DiDBiT-TMT: A Novel Method to Quantify Changes in the Proteomic Landscape Induced by Neural Plasticity	56
Tissue-, Blood-, and Urine-Based Proteomics Changes of Different Endometrial Receptivity Status in Patients after Fertility-Sparing Treatment of Atypical Endometrial Hyperplasia or Endometrial Cancer	54
Pancreatic Digestive Enzyme Dispersion into Human Organs Outside the Gastrointestinal Tract	49
Immunoproteomic Identification of Scedosporium boydii Antigens with Potential Diagnostic Interest in Cystic Fibrosis Patients	47
Protein–Protein Interaction Networks Derived from Classical and Machine Learning-Based Natural Language Processing Tools	45
Multicenter Collaborative Study to Optimize Mass Spectrometry Workflows of Clinical Specimens	45
Multispecies Benchmark Analysis for LC-MS/MS Validation and Performance Evaluation in Bottom-Up Proteomics	43
Untargeted Metabolomic Study of Lung Cancer Patients after Surgery with Curative Intent	42

Statistical Detection of Differentially Abundant Proteins in Experiments with Repeated Measures Designs and Isobaric Labeling	42
Proteomic Profiling of Plasma Extracellular Vesicles Combined with Multivariate Modeling Identified Potential Biomarkers for Distinguishing Benign Pulmonary Nodules from Early-Stage Lung Adenocarcinom	40
Antioxidant Impact of Soft Knotwood Extracts on Human Keratinocytes Shown by NMR Metabolomic Analysis	39
Sequential Proteomic and N-Glycoproteomic Analyses of Bronchoalveolar Lavage Fluids for Potential Biomarker Discovery of Lung Adenocarcinoma	37
The Future of Proteomics is Up in the Air: Can Ion Mobility Replace Liquid Chromatography for High Throughput Proteomics?	37
Metabolomic Signature in Men with Central Serous Chorioretinopathy Using UHPLC-MS	37
Data-Independent Acquisition (DIA)-Based Label-Free Redox Proteomics (DIALRP) Identifies Prominent Cysteine Oxidations in Translation Machinery in Prostate Cancer Cells Under Oxidative Stress	36
SWATH-MS Analysis of Blood Plasma and Circulating Small Extracellular Vesicles Enables Detection of Putative Protein Biomarkers of Fertility in Young and Aged Dairy Cows	36
Metabolomics Reveals Novel Serum Metabolic Signatures in Gastric Cancer by a Mass Spectrometry Platform	35
Discovery of Oogenesis Biomarkers from Mouse Oocytes Using a Single-Cell Proteomics Approach	34
Back to the Future, from a Departing Editor	34
Localization of Multiple O-Linked Glycans Exhibited in Isomeric Glycopeptides by Hot Electron Capture Dissociation	34
¹H NMR Reveals Predictive Metabolic Signatures of Response to RMP1–14 Treatment in the Plasma of Tumor-Bearing Mice	34
Comparative Proteomics and N-Glycoproteomics Reveal the Effects of Different Plasma Protein Enrichment Technologies	34
Issue Publication Information	34
Issue Editorial Masthead	33
Issue Editorial Masthead	33
TurnoveR: A Skyline External Tool for Analysis of Protein Turnover in Metabolic Labeling Studies	32
Issue Editorial Masthead	32
Categorization and Characterization of Snake Venom Variability through Intact Toxin Analysis by Mass Spectrometry	32
Analysis of the Porcine Reproductive and Respiratory Syndrome Virus Nucleocapsid Interactome	30
Considering Measurement Time and Depth in diaPASEF Plasma Proteomics	30
Analysis of Vascular Smooth Muscle Cells from Thoracic Aortic Aneurysms Reveals DNA Damage and Cell Cycle Arrest as Hallmarks in Bicuspid Aortic Valve Patients	29
EPURISp: Combining Enzymatic Digestion, Ultrafiltration, and Rapid In Situ Sample Purification for High-performance Proteomics	29
MetaNetwork Enhances Biological Insights from Quantitative Proteomics Differences by Combining Clustering and Enrichment Analyses	29
C_Half: Folding Stability Made Simple	29
Integration of Metabolomics, Lipidomics, and Proteomics Reveals the Metabolic Characterization of Nonalcoholic Steatohepatitis	28
Systematic Assessment of Deep Learning-Based Predictors of Fragmentation Intensity Profiles	28
Dysregulation of Amino Acid, Lipid, and Acylpyruvate Metabolism in Idiopathic Intracranial Hypertension: A Non-targeted Case Control and Longitudinal Metabolomic Study	27
Machine Learning-Enhanced Cerebrospinal Fluid N-Glycome for the Diagnosis and Prognosis of Primary Central Nervous System Lymphoma	27
Protein Sequencing with Single Amino Acid Resolution Discerns Peptides That Discriminate Tropomyosin Proteoforms	27
Alignment and Analysis of a Disparately Acquired Multibatch Metabolomics Study of Maternal Pregnancy Samples	27
Spatial Venomics─Cobra Venom System Reveals Spatial Differentiation of Snake Toxins by Mass Spectrometry Imaging	27
Peptide Mass Fingerprinting of South American Xenarthrans: A New Resource for Zooarcheology and Palaeontology	26
Automated High-Throughput Affinity Capture-Mass Spectrometry Platform with Data-Independent Acquisition	26
Evaluation of DDA Library-Free Strategies for Phosphoproteomics and Ubiquitinomics Data-Independent Acquisition Data	26
Oral Squamous Cell Carcinoma Lipid Evaluation in Gingiva Tissue Stored in TRIzol via Shotgun Lipidomics and MALDI Mass Spectrometry Imaging	26
Open-Source and FAIR Research Software for Proteomics	25
Plasma Olink Proteomics Reveals Novel Biomarkers for Prediction and Diagnosis in Dilated Cardiomyopathy with Heart Failure	25
Novel PPT+SEC Workflow for High-Sensitivity Extracellular Vesicle Proteomics from Cell Media	25
Integrative Analysis of Lactylome and Proteome of Hypertrophic Scar To Identify Pathways or Proteins Associated with Disease Development	25
Integrated Transcriptomics–Proteomics Analysis Identifies Molecular Phenotypic Alterations Associated with Colorectal Cancer	24
Defining Alzheimer’s Disease through Proteomic CSF Profiling	24
Leveraging Supervised Machine Learning Algorithms for System Suitability Testing of Mass Spectrometry Imaging Platforms	24
Prosit Transformer: A transformer for Prediction of MS2 Spectrum Intensities	24
Identification and Validation of Novel Biomarkers for Unstable Angina Using Olink Proteomics	24
An XIC-Centric Strategy for Improved Identification and Quantification in Proteomic Data Analyses	24
Molecular Mechanisms of Acanthamoeba castellanii Response to Different Sources of Oxidative Stress	24
Human-Derived Proteome Characterization of Tongue Coating in Colorectal Cancer	23
Increasing Proteome Coverage Through a Reduction in Analyte Complexity in Single-Cell Equivalent Samples	23

Issue Editorial Masthead	23
Untargeted Metabolomics Analysis of Gingival Tissue in Patients with Severe Periodontitis	23
Issue Editorial Masthead	23
Electrochemically Etched Tapered-Tip Stainless-Steel Electrospray-Ionization Emitters for Capillary Electrophoresis–Mass Spectrometry	22
Issue Editorial Masthead	22
A Plasma Proteomics-Based Model for Identifying the Risk of Postpartum Depression Using Machine Learning	22
Tissue Mild Extraction Enriches Membrane, Cytoplasmic, and Secreted Proteomes for Biomarker Discovery	22
Quantitative Proteomics Reveal the Mechanism of MiR-138–5p Suppressing Cervical Cancer via Targeting ZNF385A	22
Whole Blood Metabolome Profiling for Stratification of Type 2 Diabetes Patients and Identification of Biomarkers for Diabetic Kidney Disease in Asian Indian Adults	22
Multiplex Assay to Determine Acute Phase Proteins in Modified Live PRRSV Vaccinated Pigs	21
Identification of Blood Biomarkers in Ischemic Stroke by Integrated Analysis of Metabolomics and Proteomics	21
Plasma Proteomics to Identify Drug Targets and Potential Drugs for Retinal Artery Occlusion: An Integrated Analysis in the UK Biobank	21
Identification of FGG as a Biomarker in Early Gastric Cancer via Tissue Proteomics and Clinical Verification	21
Multicompartment Quantitative Proteomics Revealing Potential Mechanisms Underlying the Treatment Effects of Mesenchymal-Derived Extracellular Vesicles in a Monkey Model of Cortical Injury	21
Multiomics Insights into the Mechanism and Enhanced Efficacy of Tumor Treating Fields (TTFields) Therapy in Glioblastoma	20
NMR Metabolomics Assessment of Osteogenic Differentiation of Adipose-Tissue-Derived Mesenchymal Stem Cells	20
The Combination of Quantitative Proteomics and Systems Genetics Analysis Reveals that PTN Is Associated with Sleep-Loss-Induced Cognitive Impairment	20
Proteomic and Transcriptomic Analyses Define Molecular Subtypes, Identify Biomarkers, and Suggest Potential Therapeutic Agent for Early-Stage HBV-Related Hepatocellular Carcinoma	20
AlacatDesigner─Computational Design of Peptide Concatamers for Protein Quantitation	20
Quantitative Proteomics for the Development and Manufacturing of Human-Induced Pluripotent Stem Cell-Derived Neural Stem Cells Using Data-Independent Acquisition Mass Spectrometry	20
Comparative Tear Fluid Proteomics to Explore Treatment Responsiveness in Diabetic Macular Edema: A Pilot Study	20
Caspase-9 Is a Positive Regulator of Osteoblastic Cell Migration Identified by diaPASEF Proteomics	20
IQMMA: Efficient MS1 Intensity Extraction Pipeline Using Multiple Feature Detection Algorithms for DDA Proteomics	20
HyPep: An Open-Source Software for Identification and Discovery of Neuropeptides Using Sequence Homology Search	20
One-Pot Analytical Pipeline for Efficient and Sensitive Proteomic Analysis of Extracellular Vesicles	19
Proteomics of Serum Samples for the Exploration of the Pathological Mechanism of Obstetric Antiphospholipid Syndrome	19
Serum N-Glycan Profiling Identifies Candidate Glycan Biomarkers for Early Detection and Prediction of Alzheimer’s Disease	19
HyperSpec: Ultrafast Mass Spectra Clustering in Hyperdimensional Space	19
BrainProt v3.0: An Integrative and Simplified Omics-Based Knowledge-Base About the Human Brain and Its Associated Diseases	19
Development of a Simple and Stable NanoESI Spray System Using Suction Wind from the MS Inlet	19
Chronic Exposure to Petroleum-Derived Hydrocarbons Alters Human Skin Microbiome and Metabolome Profiles: A Pilot Study	19
Tbx18 Orchestrates Cytostructural Transdifferentiation of Cardiomyocytes to Pacemaker Cells by Recruiting the Epithelial–Mesenchymal Transition Program	19
Exploring Biomarkers in Type 2 Diabetes Mellitus versus Normoglycemia Identified through High-Throughput Proteomics: A Systematic Review and Meta-Analysis	19
Quantitative Proteomics Reveal the Inherent Antibiotic Resistance Mechanism against Norfloxacin Resistance in Aeromonas hydrophila	19
Insights into the Differential Preservation of Bone Proteomes in Inhumed and Entombed Cadavers from Italian Forensic Caseworks	18
PepPre: Promote Peptide Identification Using Accurate and Comprehensive Precursors	18
MSLibrarian: Optimized Predicted Spectral Libraries for Data-Independent Acquisition Proteomics	18
Deep, Unbiased, and Quantitative Mass Spectrometry-Based Plasma Proteome Analysis of Individual Responses to mRNA COVID-19 Vaccine	18
De Novo Linear Phosphorylation Site Motifs for BCR-ABL Kinase Revealed by Phospho-Proteomics in Yeast	18
PAMPA: A Software for Peptide Markers and Taxonomic Identification for ZooMS Samples in Archaeology and Paleontology	18
A Sensitive and Controlled Data-Independent Acquisition Method for Proteomic Analysis of Cell Therapies	18
EIF4G2 Promotes Hepatocellular Carcinoma Progression via IRES-dependent PLEKHA1 Translation Regulation	18
Identification of LMAN1- and SURF4-Dependent Secretory Cargoes	18
Quantitative Phosphoproteomics and Acetylomics of Safranal Anticancer Effects in Triple-Negative Breast Cancer Cells	18
Fit for Purpose Approach To Evaluate Detection of Amino Acid Substitutions in Shotgun Proteomics	18
Proteomics Analysis of Knee Subchondral Bone Identifies Differentially Expressed Proteins Associated with Osteoarthritis	17
Simultaneous Quantification of Apolipoprotein C-III O-Glycoforms by Protein-MRM	17
Blood Matrices and Sample Preparation Influence Blood Marker Discovery	17
Global Analysis of the Acetylome in Cisplatin-Induced Renal Fibrosis in C57BL/6 Mice	17
Serum N-Glycan Signatures as Potential Biomarkers for the Detection and Monitoring of IgG4-Related Disease	17
Valuable Contributions and Lessons Learned from Proteomics and Metabolomics Studies of COVID-19	17
A Rapid One-Pot Workflow for Sensitive Microscale Phosphoproteomics	17
Detection and Isolation of Circulating Tumor Cells from Breast Cancer Patients Using CUB Domain-Containing Protein 1	17
Differential Effects of Cocaine and Morphine on the Diurnal Regulation of the Mouse Nucleus Accumbens Proteome	17
Normal Alpha-1-Antitrypsin Variants Display in Serum Allele-Specific Protein Levels	17
How to Train a Postprocessor for Tandem Mass Spectrometry Proteomics Database Search While Maintaining Control of the False Discovery Rate	17
Toward an Ultimate Solution for Peptide Retention Time Prediction: The Effect of Column Temperature on Separation Selectivity	17
RawVegetable 2.0: Refining XL-MS Data Acquisition through Enhanced Quality Control	17
Cerebrospinal Fluid Protein Biomarker Discovery in CLN3	17
Deep Profiling of Plasma Proteoforms with Engineered Nanoparticles for Top-Down Proteomics	17
Spatial Omics Reveals that Cancer-Associated Glycan Changes Occur Early in Liver Disease Development in a Western Diet Mouse Model of MASLD	17
Identifying Sex-Specific Serum Patterns of Alzheimer’s Mice through Deep TMT Profiling and a Concentration-Dependent Concatenation Strategy	17
Issue Publication Information	16
Merging Full-Spectrum and Fragment Ion Intensity Predictions from Deep Learning for High-Quality Spectral Libraries	16
Low-Invasive Sampling Method with Tape-Disc Sampling for the Taxonomic Identification of Archeological and Paleontological Bones by Proteomics	16
Impact of Internal Fragments on Top-Down Analysis of Intact Proteins by 193 nm UVPD	16
Subchronic Graphene Exposure Reshapes Skin Cell Metabolism	16
Multidimensional Cross-Linking and Real-Time Informatics for Multiprotein Interaction Studies	16
Precision-Engineered Nano-Electrospray Emitters Enhance Ionization Efficiency for Trap-Assisted Direct Infusion Mass Spectrometry: Application in Plasma Alzheimer’s Disease Proteomics	16
SpectiCal: m/z Calibration of MS2 Peptide Spectra Using Known Low Mass Ions	16
Data-Independent Acquisition-Based Quantitative Proteomics for Pairwise Comparison of Serum and Plasma	16
NovoRank: Refinement for De Novo Peptide Sequencing Based on Spectral Clustering and Deep Learning	16
Storing Mass-Spectrometry Data in Simple Databases Enables Flexible and Intuitive Exploration without Time or Space Penalties	16
Issue Editorial Masthead	16
Construction of Protein Sequence Databases for Metaproteomics: A Review of the Current Tools and Databases	16
Distinct Regions within SAP25 Recruit O-Linked Glycosylation, DNA Demethylation, and Ubiquitin Ligase and Hydrolase Activities to the Sin3/HDAC Complex	16
Issue Editorial Masthead	16
Quantitative Acetylomics Reveals Substrates of Lysine Acetyltransferase GCN5 in Adult and Aging Drosophila	16
N-Terminomic Identification of Intracellular MMP-2 Substrates in Cardiac Tissue	16
Software-Assisted Data Processing Workflow for Intact Glycoprotein Mass Spectrometry	16

Multiplet-Assisted Peak Alignment for ¹H NMR-Based Metabolomics	16
Mitochondrial Metabolic Reprogramming along with NRF2/KEAP1-Mediated Antioxidant Mechanisms Drive Temozolomide Resistance in Glioblastoma Multiforme	16
Designing a Comparative Proteomics Experiment: Retention-Time Alignment and Imputation Algorithms Affect Statistical Comparisons between Samples	16
Novel Deep Eutectic Solvent-Based Protein Extraction Method for Pottery Residues and Archeological Implications	16
Integrative Analysis of Fucosylated Tetra Glycoforms in Hepatocellular Carcinoma: A NanoLC-PRM-MS/MS and Machine Learning Approach	16
Exploring the Effects of Probiotic Treatment on Urinary and Serum Metabolic Profiles in Healthy Individuals	16
MGVB: a New Proteomics Toolset for Fast and Efficient Data Analysis	16
Impact of Static Myoblast Loading on Protein Secretion Linked to Tenocyte Migration	16
Hybrid Quadrupole Mass Filter–Radial Ejection Linear Ion Trap and Intelligent Data Acquisition Enable Highly Multiplex Targeted Proteomics	15
LineageFilter: Improved Proteotyping of Complex Samples Using Metaproteomics and Machine Learning	15
Adaptive Metabolism of Staphylococcus aureus Revealed by Untargeted Metabolomics	15
MSstats Version 4.0: Statistical Analyses of Quantitative Mass Spectrometry-Based Proteomic Experiments with Chromatography-Based Quantification at Scale	15
Ultrahigh-Resolution NMR with Water Signal Suppression for a Deeper Understanding of the Action of Antimetabolic Drugs on Diffuse Large B-Cell Lymphoma	15
Boosting the Sensitivity of Quantitative Single-Cell Proteomics with Infrared-Tandem Mass Tags	15
LFQRatio: A Normalization Method to Decipher Quantitative Proteome Changes in Microbial Coculture Systems	15
Nonsevere Burn Induces a Prolonged Systemic Metabolic Phenotype Indicative of a Persistent Inflammatory Response Postinjury	15
Precision Structural Interpretation of Site-Specific N-Glycans in Seminal Plasma	15
AnnoDUF: A Web-Based Tool for Annotating Functions of Proteins Having Domains of Unknown Function	15
1DE-MS Profiling for Proteoform-Correlated Proteomic Analysis, by Combining SDS-PAGE, Whole-Gel Slicing, Quantitative LC–MS/MS, and Reconstruction of Gel Distributions of Several Thousands of Proteins	15
Proteomic Profiling of Human Synovial Fluid Reveals AKR1C1 as a Biomarker of Osteoarthritis Severity	15
Automated Mag-Net Enrichment Unlocks Deep and Cost-Effective LC–MS Plasma Proteomics	15
Size-Dependent Separation of Extracellular Vesicle Subtypes with Exodisc Enabling Proteomic Analysis in Prostate Cancer	15
AzidoTMT Enables Direct Enrichment and Highly Multiplexed Quantitation of Proteome-Wide Functional Residues	14
S-Palmitoylation during Retinoic Acid-Induced Neuronal Differentiation of SH-SY5Y Neuroblastoma Cells	14
PPI-Affinity: A Web Tool for the Prediction and Optimization of Protein–Peptide and Protein–Protein Binding Affinity	14
Issue Editorial Masthead	14
Analysis of Brain Protein Stability Changes in a Mouse Model of Alzheimer’s Disease	14
Issue Publication Information	14
Fasciola hepatica Cathepsin L Zymogens: Immuno-Proteomic Evidence for Highly Immunogenic Zymogen-Specific Conformational Epitopes to Support Diagnostics Development	14
Metabolomics Meets Clinics: A Multivariate Analysis of Plasma and Urine Metabolic Signatures in Pulmonary Arterial Hypertension	14
Low-Abundance Serum Protein Biomarker Candidates for HCC in Patients with Liver Cirrhosis	14
LC-Orbitrap HRMS-Based Proteomics Reveals Novel Mitochondrial Dynamics Regulatory Proteins Associated with RasV12-Induced Glioblastoma (GBM) of Drosophila	14
Issue Editorial Masthead	14
IL18R1-Related Molecules as Biomarkers for Asthma Severity and Prognostic Markers for Idiopathic Pulmonary Fibrosis	14
Targeted Mass Spectrometry of Longitudinal Patient Sera Reveals LTBP1 as a Potential Surveillance Biomarker for High-Grade Serous Ovarian Carcinoma	14
Metabolic Signature of a Healthy Lifestyle and the Risk of MASLD and Other Chronic Liver Diseases: An Observational and Mendelian Randomization Study	14
Removal of Exogenous Stimuli Reveals a Canalization of Circadian Physiology in a Vertically Migrating Copepod	14
Exosomal Proteome from Hepatocellular Carcinoma Patient-Derived Xenograft Mice Serves as Identity of Liver Cancer	13
Veneer Is a Webtool for Rapid, Standardized, and Transparent Interpretation, Annotation, and Reporting of Mammalian Cell Surface N-Glycocapture Data	13
SPE-CZE-MS Quantifies Zeptomole Amounts of Phosphorylated Peptides	13
Proteomics and Metabolomics Reveal that an Abundant α-Glucosidase Drives Sorghum Fermentability for Beer Brewing	13
Spatial Proteomic Profiling of Colorectal Cancer Revealed Its Tumor Microenvironment Heterogeneity	13
Comparative Proteomics Reveals Prolonged Corneal Preservation Impaired Ocular Surface Immunity Accompanied by Fibrosis in Human Stroma	13
Accelerating Proteomics Using Broad Specificity Proteases	13
Dynamic Changes in Lymphocyte Subsets and Inflammation-Immune-Related Proteins in Patients with Thyroid Papillary Carcinoma before and after Radioactive Iodine Therapy	13
OCIAD2 Promotes Cancer Progression via Metabolic Reprogramming in Lung Adenocarcinoma	13
Quantitative Proteomics Investigating the Molecular Responses of Aeromonas hydrophila to Zinc Stress	13
Profiling Glutathionylome in CD38-Mediated Epithelial–Mesenchymal Transition	13
Use and Comparison of Machine Learning Techniques to Discern the Protein Patterns of Autoantibodies Present in Women with and without Breast Pathology	13
Traveling Wave Ion Mobility-Derived Collision Cross Section Database for Plant Specialized Metabolites: An Application to Ventilago harmandiana Pierre	13
Non-Small Cell Lung Cancer Detection and Subtyping by UPLC-HRMS-Based Tissue Metabolomics	13
Proteomics and Metabolic Characteristics of Boar Seminal Plasma Extracellular Vesicles Reveal Biomarker Candidates Related to Sperm Motility	13
Multilayered Regulatory Dynamics of p53 Mutations and Platinum Resistance in Ovarian Cancer	13
Single Cell Analysis of Proteoforms	13
The Multiomics Landscape of Plasma-Derived Small Extracellular Vesicles during the Development of HPV⁺ Cervical Cancer	13
Correction to “The Curiosity of the Young”	13
O-GlcNAcylation: Sagacious Orchestrator of Bone-, Joint-, and Spine-Related Diseases	13
Dynamic Responses of Chromosome-Binding Protein Complexes to Meiotic Prophase I of Mouse Spermatocyte	13
Machine Learning on Large-Scale Proteomics Data Identifies Tissue and Cell-Type Specific Proteins	13
Placental Proteomics Reveals an Elevated Level of Aldo-Keto Reductase 1-B1, Highlighting Its Potential Role in Spontaneous Preterm Birth	13
A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data	13
Gel-Based Sample Fractionation with SP3-Purification for Top-Down Proteomics	13
Comparative Omics Reveals Unanticipated Metabolic Rearrangements in a High-Oil Mutant of Plastid Acetyl-CoA Carboxylase	13
Typic: A Practical and Robust Tool to Rank Proteotypic Peptides for Targeted Proteomics	13
Decoding the Impact of Isolation Window Selection and QuantUMS Filtering in DIA-NN for DIA Quantification of Peptides and Proteins	13
Coupling Proximity Biotinylation with Genomic Targeting to Characterize Locus-Specific Changes in Chromatin Environments	13
Plasma Proteomic High-Performance Biomarkers for Early Diagnosis of Colorectal Cancer	13
Novel Diagnostic Biomarkers for High-Grade Serous Ovarian Cancer Uncovered by Data-Independent Acquisition Mass Spectrometry	12
Metabolomic, Proteomic, and Single-Cell Proteomic Analysis of Cancer Cells Treated with the KRAS ^G12D Inhibitor MRTX1133	12
MSstatsShiny: A GUI for Versatile, Scalable, and Reproducible Statistical Analyses of Quantitative Proteomic Experiments	12
Orbitrap Mass Spectrometry and High-Field Asymmetric Waveform Ion Mobility Spectrometry (FAIMS) Enable the in-Depth Analysis of Human Serum Proteoforms	12
SpaceANOVA: Spatial Co-occurrence Analysis of Cell Types in Multiplex Imaging Data Using Point Process and Functional ANOVA	12
Identifying Links between Alzheimer’s Disease and Type 2 Diabetes through Proteomics	12
Impact of Local Air Pressure on Ion Mobilities and Data Consistency in diaPASEF-Based High Throughput Proteomics	12
Machine Learning-Based Multi-Omics Integration for Identification of Hepatocellular Carcinoma Biomarkers in an Egyptian Cohort	12
Evaluation of a Proteomics-Guided Protein Signature for Breast Cancer Detection in Breast Tissue	12
Technical Evaluation of Plasma Proteomics Technologies	12
Sulfoproteomics Workflow with Precursor Ion Accurate Mass Shift Analysis Reveals Novel Tyrosine Sulfoproteins in the Golgi	12
Issue Publication Information	12
Issue Editorial Masthead	12
Optimizing a Diagnostic Model of Periodontitis by Using Targeted Proteomics	12
Irradiation Causes Alterations of Polyamine, Purine, and Sulfur Metabolism in Red Blood Cells and Multiple Organs	12
Magnetic Bead-Based Workflow for Sensitive and Streamlined Cell Surface Proteomics	12
Discovering Biomarkers for Asymptomatic Tuberculosis via Olink Proteomics and Machine Learning	12
High-Coverage Metabolomics Reveals Gut Microbiota-Related Metabolic Traits of Type-2 Diabetes in Serum	12
Proteomics Platform Reveals Broad-Spectrum Nanobodies for SARS-CoV-2 Variant Neutralization	12
Issue Editorial Masthead	12
Plasma Metabolomics and Machine Learning Reveals Metabolic Alterations and Diagnostic Biomarkers for Deep Venous Thrombosis in Hypertensive Patients after Traumatic Fracture	12
Analysis of Protein–Protein Interactions in Chlamydomonas reinhardtii CC125 by Co-Fractionation Mass Spectrometry	12
Delineating Bovine Milk Derived Microvesicles from Exosomes Using Proteomics	11
Development of an Optimized LC-MS Workflow for Host Cell Protein Characterization to Support Upstream Process Development	11
A High-Resolution Subcellular Map of Proteins in Cells with Motile Cilia	11
Efficient Indexing of Peptides for Database Search Using Tide	11
Variability of 7K and 11K SomaScan Plasma Proteomics Assays	11
Deep Saliva Proteomics Elucidating the Pathogenesis of Early Childhood Caries and Identifying Biomarkers for Early Prediction	11