OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Proteome Research is 7. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-04-01 to 2025-04-01.)

Article	Citations
Multispecies Benchmark Analysis for LC-MS/MS Validation and Performance Evaluation in Bottom-Up Proteomics	219
Introducing Molecular Hypernetworks for Discovery in Multidimensional Metabolomics Data	142
H-NOX Influences Biofilm Formation, Central Metabolism, and Quorum Sensing in Paracoccus denitrificans	133
Discovery of Key Candidate Protein Biomarkers in Early-Stage Nonsmall Cell Lung Carcinoma through Quantitative Proteomics	110
Multi-Omics Study Reveals Nc886/vtRNA2-1 as a Positive Regulator of Prostate Cancer Cell Immunity	106
DiDBiT-TMT: A Novel Method to Quantify Changes in the Proteomic Landscape Induced by Neural Plasticity	102
Time-Resolved Multiomics Illustrates Host and Gut Microbe Interactions during Salmonella Infection	87
Mannose-6-Phosphate Isomerase Functional Status Shapes a Rearrangement in the Proteome and Degradome of Mannose-Treated Melanoma Cells	83
Issue Editorial Masthead	70
Issue Publication Information	68
Localization of Multiple O-Linked Glycans Exhibited in Isomeric Glycopeptides by Hot Electron Capture Dissociation	68
Extracellular Vesicle-Driven Crosstalk between Legume Plants and Rhizobia: The Peribacteroid Space of Symbiosomes as a Protein Trafficking Interface	66
The Exoproteome and Surfaceome of Toxigenic Corynebacterium diphtheriae 1737 and Its Response to Iron Restriction and Growth on Human Hemoglobin	65
Quantitative Top-down Proteomics Revealed Kinase Inhibitor-Induced Proteoform-Level Changes in Cancer Cells	60
Identification of Plasma Metabolites and Dipeptides as Diagnostic Biomarkers for Psoriasis Vulgaris through Liquid Chromatography-High Resolution Mass Spectrometry-Based Metabolomics	59
Dynamic Cellular Proteome Remodeling during SARS-CoV-2 Infection. Identification of Plasma Protein Readouts	55
GlycoPCT: Pressure Cycling Technology-Based Quantitative Glycoproteomics Reveals Distinctive N-Glycosylation in Human Liver Biopsy Samples of Nonalcoholic Fatty Liver Disease	54
Plasma IgG Glycosylation Profiling Reveals the Biological Features of Early Chronic Obstructive Pulmonary Disease	53
Isobaric Tagging and Data Independent Acquisition as Complementary Strategies for Proteome Profiling on an Orbitrap Astral Mass Spectrometer	51
Discovery of Noninvasive Biomarkers for Radiation Exposure via LC–MS-Based Hair Metabolomics	50
Unraveling the Impact of TLR4 and Sex on Chronic Alcohol Consumption-Induced Lipidome Dysregulation in Extracellular Vesicles	49
PyViscount: Validating False Discovery Rate Estimation Methods via Random Search Space Partition	48
Serum Metabolomics Profiling Coupled with Machine Learning Identifies Potential Diagnostic and Prognostic Candidate Markers in Meningioma Using Raman Spectroscopy, ATR-FTIR, and LC–MS/MS	48
Proteoform-predictor: Increasing the Phylogenetic Reach of Top-Down Proteomics	44
MARLOWE: An Untargeted Proteomics, Statistical Approach to Taxonomic Classification for Forensics	44

GlycoTCFM: Glycoproteomics Based on Two Complementary Fragmentation Methods Reveals Distinctive O-Glycosylation in Human Sperm and Seminal Plasma	43
Proteomics and Metabolomics Analyses Reveal a Dynamic Landscape of Coal Workers’ Pneumoconiosis: An Insight into Disease Progression	43
Comprehensive Serum Lipidomics for Detecting Incipient Dementia in Parkinson’s Disease	43
Shared Proteins and Pathways of Cardiovascular and Cognitive Diseases: Relation to Vascular Cognitive Impairment	43
Proteomic Analysis of Whole Blood Using Volumetric Absorptive Microsampling for Precision Medicine Biomarker Studies	41
Prioritization of the Secondary Metabolites for the Rapid Annotation Based on Liquid Chromatography-High Resolution Mass Spectrometry Assessment: Varanasine and Schroffanone from Murraya paniculata	41
Issue Publication Information	39
Exploring the Tomato Root Protein Network Exploited by Core Type 3 Effectors from the Ralstonia solanacearum Species Complex	38
Comparative Analysis of Transcriptomic and Proteomic Expression between Two Non-Small Cell Lung Cancer Subtypes	37
Integrated View of Baseline Protein Expression in Human Tissues Using Public Data Independent Acquisition Data Sets	36
Quantitative Analysis of Nonhistone Lysine Methylation Sites and Lysine Demethylases in Breast Cancer Cell Lines	36
A Multiyear Longitudinal Harmonization Study of Quality Controls in Mass Spectrometry Proteomics Core Facilities	35
OpenMS WebApps: Building User-Friendly Solutions for MS Analysis	34
The Ubiquitin Ligase CHIP Accelerates Papillary Thyroid Carcinoma Metastasis via the Transgelin–Matrix Metalloproteinase-9 Axis	34
Issue Publication Information	34
Sequential Proteomic and N-Glycoproteomic Analyses of Bronchoalveolar Lavage Fluids for Potential Biomarker Discovery of Lung Adenocarcinoma	34
Issue Editorial Masthead	33
System-Wide Quantitative N-Glycoproteomic Analysis from K562 Cells and Mouse Liver Tissues	33
Issue Editorial Masthead	33
Issue Publication Information	33
Identification, Measurement, and Assessment of the Clinical Utility of Human Pancreatic Polypeptide by Liquid Chromatography–Tandem Mass Spectrometry	32
Olink Proteomics-Based Exploration of Immuno-Oncology-Related Biomarkers Leading to Lung Adenocarcinoma Progression	32
ChIP-seq and RNA-seq Reveal the Involvement of Histone Lactylation Modification in Gestational Diabetes Mellitus	31
Issue Publication Information	31
Single-Cell Proteomics Accelerates toward Proteoforms	30
Issue Editorial Masthead	30
Issue Publication Information	30
Issue Editorial Masthead	30
Issue Editorial Masthead	30
Issue Publication Information	30
Issue Publication Information	29
IP-LC-MSMS Enables Identification of Three Tau O-GlcNAcylation Sites as O-GlcNAcase Inhibition Pharmacodynamic Readout in Transgenic Mice Overexpressing Human Tau	29
Issue Editorial Masthead	29
Issue Publication Information	28
Issue Editorial Masthead	28
The Curiosity of the Young	28
Discovery Proteomics for COVID-19: Where We Are Now	27
Dynamics of Single-Cell Protein Covariation during Epithelial–Mesenchymal Transition	27
Issue Publication Information	27
Global Profiling of Lactylation Proteomics and Specific Lactylated Site Validation in Rheumatoid Arthritis Patients	26
Metabolomics- and Proteomics-Based Disease Diagnostic Classifier Model for the Prediction and Diagnosis of Colorectal Carcinoma	26
Exercise Alleviates Behavioral Disorders but Shapes Brain Metabolism of APP/PS1 Mice in a Region- and Exercise-Specific Manner	26
Serum Bile Acid Metabolites Predict the Therapeutic Effect of Mesalazine in Patients with Ulcerative Colitis	26
Correction to Spatial Multiomics of Lipids, N-Glycans, and Tryptic Peptides on a Single FFPE Tissue Section	25
Correction to “Longitudinal Serum Proteomics Characterization of CD19-CAR-T Cell Therapy for B-Cell Malignancies”	25
Functional Proteomics Analysis of Norfloxacin-Resistant Edwardsiella tarda	25
Cellular Ligand–Receptor Perturbations Unravel MEIS2 as a Key Factor for the Aggressive Progression and Prognosis in Stage II/III Colorectal Cancer	25
Temporal Profiling of Epitranscriptomic Modulators during Osteogenic Differentiation of Human Embryonic Stem Cells	25
Integrated Analysis of Cross-Links and Dead-End Peptides for Enhanced Interpretation of Quantitative XL-MS	25
Differential Proteome Profiling Analysis under Pesticide Stress by the Use of a Nano-UHPLC-MS/MS Untargeted Proteomic-Based Approach on a 3D-Developed Neurospheroid Model: Identification of Protein In	24

Regional Differences in the Small Intestinal Proteome of Control Mice and of Mice Lacking Lysosomal Acid Lipase	24
Sex-Specific Alterations in Placental Proteomics Induced by Intrauterine Hyperglycemia	24
Inhibition of the Alternative Complement Pathway May Cause Secretion of Factor B, Enabling an Early Detection of Pancreatic Cancer	24
Extraction Protocol for Parallel Analysis of Proteins and DNA from Ancient Teeth and Dental Calculus	24
Multicenter Collaborative Study to Optimize Mass Spectrometry Workflows of Clinical Specimens	24
Protein Dynamic Landscape of Pig Embryos during Peri-Implantation Development	24
Plasma TNFRSF11B as a New Predictive Inflammatory Marker of Sepsis–ARDS with Endothelial Dysfunction	24
Multiomics Evaluation of Human iPSCs and iPSC-Derived Neurons	24
Comparative Analysis of Protein Quantification by the SomaScan Assay versus Orthogonal Methods in Urine from People with Diabetic Kidney Disease	23
Mass Spectrometry-Based Proteomics of Poly(methylmethacrylate)-Embedded Bone	23
Optimizing Spectronaut Search Parameters to Improve Data Quality with Minimal Proteome Coverage Reductions in DIA Analyses of Heterogeneous Samples	23
Metabolomic Sexual Dimorphism of the Mouse Brain is Predominantly Abolished by Gonadectomy with a Higher Impact on Females	23
Identification and Functional Analysis of Lysine 2-Hydroxyisobutyrylation in Cyanobacteria	23
Iron Deficiency and Recovery in Yeast: A Quantitative Proteomics Approach	23
Vocabulary Matters: An Annotation Pipeline and Four Deep Learning Algorithms for Enzyme Named Entity Recognition	23
Correction to “Label-Free Quantitative Detection and Comparative Analysis of Lysine Acetylation during the Different Life Stages of Eimeria tenella”	23
Proteomic Analysis of Caco-2 Cells Disrupted by EcN 1917-Derived OMVs Reveals Molecular Information on Bacteria-Mediated Cancer Cell Migration	22
A Simple Optimization Workflow to Enable Precise and Accurate Imputation of Missing Values in Proteomic Data Sets	22
Identification of Candidate Protein Biomarkers Associated with Domoic Acid Toxicosis in Cerebrospinal Fluid of California Sea Lions (Zalophus californianus)	22
Understanding the Relationship between Intrinsic Cardiorespiratory Fitness and Serum and Skeletal Muscle Metabolomics Profile	22
Urinary Volatilomics Unveils a Candidate Biomarker Panel for Noninvasive Detection of Clear Cell Renal Cell Carcinoma	22
Global Proteomic Analysis Reveals Alterations in Differentially Expressed Proteins between Cardiopathic Lamin A/C Mutations	22
Identification and Quantification of Human Relaxin Proteins by Immunoaffinity-Mass Spectrometry	22
Comprehensive Urinary Proteome Profiling Analysis Identifies Diagnosis and Relapse Surveillance Biomarkers for Bladder Cancer	22
Discovery and Verification of Sjögren’s Syndrome Protein Biomarkers in Tears by Targeted LC-MRM	21
Impact of Surfactants on Cumulative Trypsin Activity in Bottom-Up Proteome Analysis	21
DIAproteomics: A Multifunctional Data Analysis Pipeline for Data-Independent Acquisition Proteomics and Peptidomics	21
Reverse Phase Proteomic Array Profiling of Asparagine Synthetase Expression in Newly Diagnosed Acute Myeloid Leukemia	21
Proteomic Study Reveals Major Pathways Regulating the Development of Black Soldier Fly	21
Differential Proteomic Profiling at Different Phases of Dengue Infection: An Intricate Insight from Proteins to Pathogenesis	21
Retinal Proteomics of a Mouse Model of Dystroglycanopathies Reveals Molecular Alterations in Photoreceptors	21
Edwardsiella tarda Attenuates Virulence upon Oxytetracycline Resistance	21
Picoliter Single-Cell Reactor for Proteome Profiling by In Situ Cell Lysis, Protein Immobilization, Digestion, and Droplet Transfer	21
Site-Specific Glycosylation Analysis of Human and Murine Fcγ Receptor II Family Members Reveals Variant-Specific N-Glycosylation	21
Omics and Transgenic Analyses Reveal that Salvianolic Acid B Exhibits its Anti-Inflammatory Effects through Inhibiting the Mincle-Syk-Related Pathway in Macrophages	20
Comparative Evaluation of MaxQuant and Proteome Discoverer MS1-Based Protein Quantification Tools	20
Bridging the Polar and Hydrophobic Metabolome in Single-Run Untargeted Liquid Chromatography-Mass Spectrometry Dried Blood Spot Metabolomics for Clinical Purposes	20
Proximity Proteomics Has Potential for Extracellular Vesicle Identification	20
Characterization of the Antibody Response to SARS-CoV-2 Infection in COVID-19 Transplant versus Nontransplant Recipients by Ig-MS	20
Lipidomics Study of Type 1 Diabetic Rats Using Online Phase Transition Trapping-Supercritical Fluid Extraction-Chromatography Coupled with Quadrupole Time-of-Flight Tandem Mass Spectrometry	20
Quantitative Proteomic Analysis Revealed Broad Roles of N⁶-Methyladenosine in Heat Shock Response	20
ProteoSushi: A Software Tool to Biologically Annotate and Quantify Modification-Specific, Peptide-Centric Proteomics Data Sets	20
Toward Comprehensive Plasma Proteomics by Orthogonal Protease Digestion	20
Interactome of Site-Specifically Acetylated Linker Histone H1	19
Characteristics of Myocardial Structure and Central Carbon Metabolism during the Early and Compensatory Stages of Cardiac Hypertrophy	19
Kinase-Catalyzed Biotinylation to Map Cell Signaling Pathways: Application to Epidermal Growth Factor Signaling	19
Genetic and Environmental Contributions to Variation in the Stable Urinary NMR Metabolome over Time: A Classic Twin Study	19
Quantitative Proteomics Reveals a Novel Role of the E3 Ubiquitin-Protein Ligase FANCL in the Activation of the Innate Immune Response through Regulation of TBK1 Phosphorylation during Peste des Petits	19
Automated Assignment of Proteoform Classification Levels	19
Exploring Top-Down Mass Spectrometric Approaches To Probe Forest Cobra (Naja melanoleuca) Venom Proteoforms	19
The Proteomic Landscape of Monocytes in Response to Colorectal Cancer Cells	19
Impact of Systemic versus Intratympanic Dexamethasone Administration on the Perilymph Proteome	19
Proteome and Metabolome Profiling of Anticoagulant Disorders Induced by Familial Protein S Deficiency	19
Use of Proteomics for Dietary Reconstruction: A Case Study Using Animal Teeth from Ancient Mesopotamia	18
Driving Single Cell Proteomics Forward with Innovation	18
Developing Method for Minor Acidic O-Glycan Analysis in Mucin and Cancer Cell Samples	18
PPARα and PPARγ Signaling Is Enhanced in the Brain of the Naked Mole-Rat, a Mammal that Shows Intrinsic Neuroprotection from Oxygen Deprivation	18
TMT-Based Quantitative Proteomics Revealed the Antibacterial Mechanism of Cinnamaldehyde against MRSA	18
PrSM-Level Side-by-Side Comparison of Online LC-MS Methods with Intact Histone H3 and H4 Proteoforms	18
Correction to “d2ome, Software for in Vivo Protein Turnover Analysis Using Heavy Water Labeling and LC–MS, Reveals Alterations of Hepatic Proteome Dynamics in a Mouse Model of NAFLD”	18
Lactyllysine Esterification Enables Efficient Lactylprotein Expression via Genetic Code Expansion and Supports Functional Proteomics Studies	17
The Novel Interplay between Commensal Gut Bacteria and Metabolites in Diet-Induced Hyperlipidemic Rats Treated with Simvastatin	17
Targeted Proteomics Profiling for Biomarker Discovery in Glaucoma Using the Olink Proteomics Platform	17
Analysis of Brain Protein Stability Changes in Mouse Models of Normal Aging and α-Synucleinopathy Reveals Age- and Disease-Related Differences	17
Reliability of Serum-Derived Connectome Indicators in Identifying Cirrhosis	17
Multiomics Method Enabled by Sequential Metabolomics and Proteomics for Human Pluripotent Stem-Cell-Derived Cardiomyocytes	17
UPLC-MS-Based Serum Metabolic Profiling Reveals Potential Biomarkers for Predicting Propofol Responsiveness in Females	17
IreK-Mediated, Cell Wall-Protective Phosphorylation in Enterococcus faecalis	17
Proteomics Analysis of Renal Cell Line Caki-2 with AFMID Overexpression and Potential Biomarker Discovery in Urine	17
Rapid Identification of Ancient Leather Species Using an Enzyme-Linked Immunosorbent Assay Based on Proteomic and Evolutionary Analyses	17
Protein–Protein Interaction Networks Derived from Classical and Machine Learning-Based Natural Language Processing Tools	16
Deep Time Paleoproteomics: Looking Forward	16
Systematic Survey of the Regulatory Networks of the Long Noncoding RNA BANCR in Cervical Cancer Cells	16
Systematic Identification of Microproteins during the Development of Drosophila melanogaster	16
Skyline Batch: An Intuitive User Interface for Batch Processing with Skyline	16
Identification of Microproteins in Saccharomyces cerevisiae under Different Stress Conditions	16
Alterations of Ceramides, Acylcarnitines, GlyceroLPLs, and Amines in NSCLC Tissues	16
Detecting Human Contaminant Genetically Variant Peptides in Nonhuman Samples	16
Integration of Automatic Text Mining and Genomic and Proteomic Analysis to Unravel Prostate Cancer Biomarkers	16
Reproducible Determination of High-Density Lipoprotein Proteotypes	16

Distinct Glycosylation Responses to Spinal Cord Injury in Regenerative and Nonregenerative Models	16
Prevaccination Glycan Markers of Response to an Influenza Vaccine Implicate the Complement Pathway	16
Structural Analysis of the 20S Proteasome Using Native Mass Spectrometry and Ultraviolet Photodissociation	16
Exploiting pglB Oligosaccharyltransferase-Positive and -Negative Campylobacter jejuni and a Multiprotease Digestion Strategy to Identify Novel Sites Modified by N-Linked Protein Glycosyl	16
Deep Time Course Proteomics of SARS-CoV- and SARS-CoV-2-Infected Human Lung Epithelial Cells (Calu-3) Reveals Strong Induction of Interferon-Stimulated Gene Expression by SARS-CoV-2 in Contrast to SAR	16
Unphosphorylated Form of the PAQosome Core Subunit RPAP3 Binds Ribosomal Preassembly Complexes to Modulate Ribosome Biogenesis	16
Evaluation of Volumetric Absorptive Microsampling and Mass Spectrometry Data-Independent Acquisition of Hemoglobin-Related Clinical Markers	16
Simultaneous Polar Metabolite and N-Glycan Extraction Workflow for Joint-Omics Analysis: A Synergistic Approach for Novel Insights into Diseases	16
Comparison of Microflow and Analytical Flow Liquid Chromatography Coupled to Mass Spectrometry Global Metabolomics Methods Using a Urea Cycle Disorder Mouse Model	16
Comprehensive Metabolomics and Lipidomics Profiling of Prostate Cancer Tissue Reveals Metabolic Dysregulations Associated with Disease Development	15
Uncovering Hidden Members and Functions of the Soil Microbiome Using De Novo Metaproteomics	15
In Vitro Kinase-to-Phosphosite Database (iKiP-DB) Predicts Kinase Activity in Phosphoproteomic Datasets	15
Targeted Metabolomics Reveals Birth Screening Biomarkers for Biliary Atresia in Dried Blood Spots	15
Immobilized Titanium (IV) Ion Affinity Chromatography Contributes to Efficient Proteomics Analysis of Cellular Nucleic Acid-Binding Proteins	15
Enhancement of Proteome Coverage by Ion Mobility Fractionation Coupled to PASEF on a TIMS–QTOF Instrument	15
FastCAT Accelerates Absolute Quantification of Proteins Using Multiple Short Nonpurified Chimeric Standards	15
Utilizing Nonequilibrium Isotope Enrichments to Dramatically Increase Turnover Measurement Ranges in Single Biopsy Samples from Humans	15
Organ-Based Proteome and Post-Translational Modification Profiling of a Widely Cultivated Tropical Water Fish, Labeo rohita	15
MALDI(+) FT-ICR Mass Spectrometry (MS) Combined with Machine Learning toward Saliva-Based Diagnostic Screening for COVID-19	15
Mapping Tyrosine Kinases Based on a TK Activity-Representing Peptide Library Reveals a Role for SRC in H1975 Drug Resistance	15
Evaluation of the Suitability of Dried Saliva Spots for In-Depth Proteome Analyses for Clinical Applications	14
Challenging Targets or Describing Mismatches? A Comment on Common Decoy Distribution by Madej et al.	14
SLiMAn: An Integrative Web Server for Exploring Short Linear Motif-Mediated Interactions in Interactomes	14
PeptideRanger: An R Package to Optimize Synthetic Peptide Selection for Mass Spectrometry Applications	14
Dynamic Phosphotyrosine-Dependent Signaling Profiling in Living Cells by Two-Dimensional Proximity Proteomics	14
A Method to Estimate the Distribution of Proteins across Multiple Compartments Using Data from Quantitative Proteomics Subcellular Fractionation Experiments	14
Hepatic Metabolic Profiling of Lifelong Exercise Training Rats	14
Neuropeptidomes of Tenebrio molitor L. and Zophobas atratus Fab. (Coleoptera, Polyphaga: Tenebrionidae)	14
Divergent Antibody Repertoires Found for Omicron versus Wuhan SARS-CoV-2 Strains Using Ig-MS	14
Sensitive Analysis of Recombinant Human Erythropoietin Glycopeptides by On-Line Phenylboronic Acid Solid-Phase Extraction Capillary Electrophoresis Mass Spectrometry	14
urPTMdb/TeaProt: Upstream and Downstream Proteomics Analysis	14
Optimized Workflow for Enrichment and Identification of Biotinylated Peptides Using Tamavidin 2-REV for BioID and Cell Surface Proteomics	14
Proteome Decomplexation of Trimeresurus erythrurus Venom from Mizoram, India	14
Strategies for Increasing the Depth and Throughput of Protein Analysis by plexDIA	14
Quantification of Serum Metabolites in Early Colorectal Adenomas Using Isobaric Labeling Mass Spectrometry	14
Proteomic Characterization of Peritoneal Extracellular Vesicles in a Mouse Model of Peritoneal Fibrosis	14
Repeat-Enhancing Featured Ion-Guided Stoichiometry for Identification and Quantification of Direct Infusion Proteome	14
Integrative Proteogenomics Using ProteomeGenerator2	13
Targeted Mass Spectrometry Assays for Specific Quantification of Urinary proPSA Isoforms	13
The Glomerulus Multiomics Analysis Provides Deeper Insights into Diabetic Nephropathy	13
Leishmania donovani Induces Multiple Dynamic Responses in the Metabolome Associated with Amastigote Differentiation and Maturation Inside the Human Macrophage	13
Correction to Glycosylation Profiling of Neoplastic Biomarker Alpha Fetoprotein through Intact Mass Protein Analysis	13
Benefit of In Silico Predicted Spectral Libraries in Data-Independent Acquisition Data Analysis Workflows	13
Untargeted Metabolomic Study of Lung Cancer Patients after Surgery with Curative Intent	13
Serum Metabolomic Signatures of Hirschsprung’s Disease Based on GC–MS and LC–MS	13
Enzymatic Phosphorylation of Oxidized Tyrosine Residues	13
Onto Grid Purification and 3D Reconstruction of Protein Complexes Using Matrix-Landing Native Mass Spectrometry	13
Proteomics Analysis of Plasma-Derived Exosomes Unveils the Aberrant Complement and Coagulation Cascades in Dermatomyositis/Polymyositis	13
Effect of Processing Methods of Human Saliva on the Proteomic Profile and Protein-Mediated Biological Processes	13
Rapid Profiling of Protein Complex Reorganization in Perturbed Systems	13
Integrated View of Baseline Protein Expression in Human Tissues	13
Preparative Electrophoresis for HDL Particle Size Separation and Intact-Mass Apolipoprotein Proteoform Analysis	13
Proteomic Profiling of the Substantia Nigra to Identify Determinants of Lewy Body Pathology and Dopaminergic Neuronal Loss	13
Automated Proteomics Workflows for High-Throughput Library Generation and Biomarker Detection Using Data-Independent Acquisition	13
Meta4P: A User-Friendly Tool to Parse Label-Free Quantitative Metaproteomic Data and Taxonomic/Functional Annotations	13
Metabolic Profile of Individuals with and without Type 2 Diabetes from Sub-Saharan Africa	13
Metabolomics Study Revealing Purines as Potential Diagnostic Biomarkers of Acute Respiratory Distress Syndrome in Patients with Community─Acquired Pneumonia	13
Online Alkaline-pH Reverse Phase Nanoelectrospray-Tandem Mass Spectrometry Complements Conventional Low-pH Method for Global Proteomic Analysis	13
Executable Network Models of Integrated Multiomics Data	13
Deciphering the Properties and Functions of Glycoproteins Using Quantitative Proteomics	13
Triqler for Protein Summarization of Data from Data-Independent Acquisition Mass Spectrometry	13
Vacuum Insulated Probe Heated Electrospray Ionization Source Enhances Microflow Rate Chromatography Signals in the Bruker timsTOF Mass Spectrometer	13
Machine Learning in Proteomics and Metabolomics	13
Mass Spectrometric Analysis of Urine from COVID-19 Patients for Detection of SARS-CoV-2 Viral Antigen and to Study Host Response	13
High-Field Asymmetric Waveform Ion Mobility Spectrometry: Practical Alternative for Cardiac Proteome Sample Processing	13
Putting Humpty Dumpty Back Together Again: What Does Protein Quantification Mean in Bottom-Up Proteomics?	12
Disruptive Effects of Resveratrol on a Bacterial Pathogen of Beans	12
Proteomics for Low Cell Numbers: How to Optimize the Sample Preparation Workflow for Mass Spectrometry Analysis	12
Canadian Proteomics: A Journey across the Country Highlights Discovery and Innovation	12
Margaret Dayhoff: A Personal Memoir	12
Nontargeted Serum Lipid Profiling of Nonalcoholic Steatohepatitis by Multisegment Injection–Nonaqueous Capillary Electrophoresis–Mass Spectrometry: A Multiplexed Separation Platform for Resolving Ioni	12
The O-Glycome of Human Nigrostriatal Tissue and Its Alteration in Parkinson’s Disease	12
Shared and Distinctive Neighborhoods of Emerin and Lamin B Receptor Revealed by Proximity Labeling and Quantitative Proteomics	12
SWATH-MS Analysis of Blood Plasma and Circulating Small Extracellular Vesicles Enables Detection of Putative Protein Biomarkers of Fertility in Young and Aged Dairy Cows	12
Time-of-Flight Fragmentation Spectra Generated by the Proteomic Analysis of Single Human Cells Do Not Exhibit Atypical Fragmentation Patterns	12
Exosomes Derived from Bone Marrow Mesenchymal Stem Cells Alleviate Rheumatoid Arthritis Symptoms via Shuttling Proteins	12
Optimization of Ultrafast Proteomics Using an LC-Quadrupole-Orbitrap Mass Spectrometer with Data-Independent Acquisition	12
Representing and Comparing Site-Specific Glycan Abundance Distributions of Glycoproteins	12
Metabolomics Reveals Novel Serum Metabolic Signatures in Gastric Cancer by a Mass Spectrometry Platform	12
Toward an Integrated Machine Learning Model of a Proteomics Experiment	12
Proteomics Standards Initiative’s ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms	12
High-Throughput Detection of an Alkaloidal Plant Metabolome in Plant Extracts Using LC-ESI-QTOF-MS	12
Systematic Proteomics Study on the Embryonic Development of Danio rerio	12
Plasma Olink Proteomics Identifies CCL20 as a Novel Predictive and Diagnostic Inflammatory Marker for Preeclampsia	12
Discovery of RNA-Protein Molecular Clamps Using Proteome-Wide Stability Assays	12
Issue Publication Information	12
Evaluation of Biological Mechanisms of Eucommiae Folium in Hypertensive Kidney Injury by Integration of Untargeted Metabolomics and Network Pharmacology	12
Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline	12
¹H NMR Urinary Metabolomics Profiling of Newborns with Congenital Human Cytomegalovirus Infection: Insights into Metabolic Alterations	12
Proteomic Analysis of Oil-Roasted Cashews Using a Customized Allergen-Focused Protein Database	12
Proteogenomics Integrating Novel Junction Peptide Identification Strategy Discovers Three Novel Protein Isoforms of Human NHSL1 and EEF1B2	12
Untargeted 2D NMR Metabolomics of [¹³C-methyl]Methionine-Labeled Tumor Models Reveals the Non-DNA Methylome and Provides Clues to Methyl Metabolism Shift during Tumor Progression	11
In-Depth Proteomic Analysis of Tissue Interstitial Fluid Reveals Biomarker Candidates Related to Varying Differentiation Statuses in Gastric Adenocarcinoma	11
Alteration of Ubiquitination in the Brain of ENOPH1 Knockout Mice after Early Ischemic Stroke	11
Taurine Alleviates Ferroptosis-Induced Metabolic Impairments in C2C12 Myoblasts by Stabilizing the Labile Iron Pool and Improving Redox Homeostasis	11