Journal of Proteome Research

Papers
(The TQCC of Journal of Proteome Research is 7. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-08-01 to 2025-08-01.)
ArticleCitations
Canadian Proteomics: A Journey across the Country Highlights Discovery and Innovation173
Sequential Proteomic and N-Glycoproteomic Analyses of Bronchoalveolar Lavage Fluids for Potential Biomarker Discovery of Lung Adenocarcinoma169
Integration of Automatic Text Mining and Genomic and Proteomic Analysis to Unravel Prostate Cancer Biomarkers147
Margaret Dayhoff: A Personal Memoir146
Systematic Survey of the Regulatory Networks of the Long Noncoding RNA BANCR in Cervical Cancer Cells124
A Method to Estimate the Distribution of Proteins across Multiple Compartments Using Data from Quantitative Proteomics Subcellular Fractionation Experiments95
Targeted Proteomics Profiling for Biomarker Discovery in Glaucoma Using the Olink Proteomics Platform76
Reverse Phase Proteomic Array Profiling of Asparagine Synthetase Expression in Newly Diagnosed Acute Myeloid Leukemia76
Comprehensive Metabolomics and Lipidomics Profiling of Prostate Cancer Tissue Reveals Metabolic Dysregulations Associated with Disease Development72
Uncovering Hidden Members and Functions of the Soil Microbiome Using De Novo Metaproteomics72
Longitudinal Proteomic Changes in HCT 116 Colon Cancer Spheroids During Growth69
Multispecies Benchmark Analysis for LC-MS/MS Validation and Performance Evaluation in Bottom-Up Proteomics64
Comparison of Microflow and Analytical Flow Liquid Chromatography Coupled to Mass Spectrometry Global Metabolomics Methods Using a Urea Cycle Disorder Mouse Model63
Antioxidant Impact of Soft Knotwood Extracts on Human Keratinocytes Shown by NMR Metabolomic Analysis63
SWATH-MS Analysis of Blood Plasma and Circulating Small Extracellular Vesicles Enables Detection of Putative Protein Biomarkers of Fertility in Young and Aged Dairy Cows56
Multicenter Collaborative Study to Optimize Mass Spectrometry Workflows of Clinical Specimens52
Untargeted Metabolomic Study of Lung Cancer Patients after Surgery with Curative Intent52
DiDBiT-TMT: A Novel Method to Quantify Changes in the Proteomic Landscape Induced by Neural Plasticity50
Metabolomic Signature in Men with Central Serous Chorioretinopathy Using UHPLC-MS50
Metabolomics Reveals Novel Serum Metabolic Signatures in Gastric Cancer by a Mass Spectrometry Platform48
Dynamic Phosphotyrosine-Dependent Signaling Profiling in Living Cells by Two-Dimensional Proximity Proteomics48
Time-Resolved Multiomics Illustrates Host and Gut Microbe Interactions during Salmonella Infection47
The Novel Interplay between Commensal Gut Bacteria and Metabolites in Diet-Induced Hyperlipidemic Rats Treated with Simvastatin45
The Future of Proteomics is Up in the Air: Can Ion Mobility Replace Liquid Chromatography for High Throughput Proteomics?42
Lipidomic Network Analysis Reveals Amyloid-β-Induced Lysosomal Lipid Accumulation in the Cortex and Hippocampus of 5xFAD Mice40
Issue Publication Information39
Statistical Detection of Differentially Abundant Proteins in Experiments with Repeated Measures Designs and Isobaric Labeling38
Protein–Protein Interaction Networks Derived from Classical and Machine Learning-Based Natural Language Processing Tools37
Evaluation of the Suitability of Dried Saliva Spots for In-Depth Proteome Analyses for Clinical Applications37
Data-Independent Acquisition (DIA)-Based Label-Free Redox Proteomics (DIALRP) Identifies Prominent Cysteine Oxidations in Translation Machinery in Prostate Cancer Cells Under Oxidative Stress37
Novel PPT+SEC Workflow for High-Sensitivity Extracellular Vesicle Proteomics from Cell Media36
Automated High-Throughput Affinity Capture-Mass Spectrometry Platform with Data-Independent Acquisition36
Systematic Assessment of Deep Learning-Based Predictors of Fragmentation Intensity Profiles36
Localization of Multiple O-Linked Glycans Exhibited in Isomeric Glycopeptides by Hot Electron Capture Dissociation36
Metabolomics Analysis of the Effect of GAT-2 Deficiency on Th1 Cells in Mice35
CHalf: Folding Stability Made Simple34
ppx: Programmatic Access to Proteomics Data Repositories34
MetaNetwork Enhances Biological Insights from Quantitative Proteomics Differences by Combining Clustering and Enrichment Analyses34
Integrated Transcriptomics–Proteomics Analysis Identifies Molecular Phenotypic Alterations Associated with Colorectal Cancer32
Categorization and Characterization of Snake Venom Variability through Intact Toxin Analysis by Mass Spectrometry32
Comparative Proteomics and N-Glycoproteomics Reveal the Effects of Different Plasma Protein Enrichment Technologies32
An XIC-Centric Strategy for Improved Identification and Quantification in Proteomic Data Analyses31
EPURISp: Combining Enzymatic Digestion, Ultrafiltration, and Rapid In Situ Sample Purification for High-performance Proteomics31
Integration of Metabolomics, Lipidomics, and Proteomics Reveals the Metabolic Characterization of Nonalcoholic Steatohepatitis31
Evaluation of DDA Library-Free Strategies for Phosphoproteomics and Ubiquitinomics Data-Independent Acquisition Data30
Machine Learning-Enhanced Cerebrospinal Fluid N-Glycome for the Diagnosis and Prognosis of Primary Central Nervous System Lymphoma29
Discovery of Oogenesis Biomarkers from Mouse Oocytes Using a Single-Cell Proteomics Approach29
Back to the Future, from a Departing Editor28
Comprehensive Identification of Regulatory Protein Networks28
Scents and Flavors of Mass Spectrometry in Latin America28
Spatial Venomics─Cobra Venom System Reveals Spatial Differentiation of Snake Toxins by Mass Spectrometry Imaging27
Leveraging Supervised Machine Learning Algorithms for System Suitability Testing of Mass Spectrometry Imaging Platforms27
Plasma Olink Proteomics Reveals Novel Biomarkers for Prediction and Diagnosis in Dilated Cardiomyopathy with Heart Failure26
Prosit Transformer: A transformer for Prediction of MS2 Spectrum Intensities26
TurnoveR: A Skyline External Tool for Analysis of Protein Turnover in Metabolic Labeling Studies26
Open-Source and FAIR Research Software for Proteomics26
Alignment and Analysis of a Disparately Acquired Multibatch Metabolomics Study of Maternal Pregnancy Samples26
Defining Alzheimer’s Disease through Proteomic CSF Profiling25
Issue Publication Information25
Issue Editorial Masthead25
Protein Sequencing with Single Amino Acid Resolution Discerns Peptides That Discriminate Tropomyosin Proteoforms25
Dysregulation of Amino Acid, Lipid, and Acylpyruvate Metabolism in Idiopathic Intracranial Hypertension: A Non-targeted Case Control and Longitudinal Metabolomic Study25
Analysis of Vascular Smooth Muscle Cells from Thoracic Aortic Aneurysms Reveals DNA Damage and Cell Cycle Arrest as Hallmarks in Bicuspid Aortic Valve Patients25
Issue Editorial Masthead25
Issue Editorial Masthead25
Oral Squamous Cell Carcinoma Lipid Evaluation in Gingiva Tissue Stored in TRIzol via Shotgun Lipidomics and MALDI Mass Spectrometry Imaging25
Molecular Mechanisms of Acanthamoeba castellanii Response to Different Sources of Oxidative Stress25
Integrative Analysis of Lactylome and Proteome of Hypertrophic Scar To Identify Pathways or Proteins Associated with Disease Development25
1H NMR Reveals Predictive Metabolic Signatures of Response to RMP1–14 Treatment in the Plasma of Tumor-Bearing Mice25
Human-Derived Proteome Characterization of Tongue Coating in Colorectal Cancer24
HLA Allele-Specific Quantitative Profiling of Type 1 Diabetic B Lymphocyte Immunopeptidome24
Chronic Exposure to Petroleum-Derived Hydrocarbons Alters Human Skin Microbiome and Metabolome Profiles: A Pilot Study24
NMR Metabolomics Assessment of Osteogenic Differentiation of Adipose-Tissue-Derived Mesenchymal Stem Cells24
A Sensitive and Controlled Data-Independent Acquisition Method for Proteomic Analysis of Cell Therapies23
Normal Alpha-1-Antitrypsin Variants Display in Serum Allele-Specific Protein Levels23
Identification of LMAN1- and SURF4-Dependent Secretory Cargoes23
Differential Effects of Cocaine and Morphine on the Diurnal Regulation of the Mouse Nucleus Accumbens Proteome23
Multiplex Assay to Determine Acute Phase Proteins in Modified Live PRRSV Vaccinated Pigs23
Tbx18 Orchestrates Cytostructural Transdifferentiation of Cardiomyocytes to Pacemaker Cells by Recruiting the Epithelial–Mesenchymal Transition Program22
Identification of FGG as a Biomarker in Early Gastric Cancer via Tissue Proteomics and Clinical Verification22
Increasing Proteome Coverage Through a Reduction in Analyte Complexity in Single-Cell Equivalent Samples22
Detection and Isolation of Circulating Tumor Cells from Breast Cancer Patients Using CUB Domain-Containing Protein 122
Untargeted Metabolomics Analysis of Gingival Tissue in Patients with Severe Periodontitis22
Fit for Purpose Approach To Evaluate Detection of Amino Acid Substitutions in Shotgun Proteomics21
Plasma Proteomics to Identify Drug Targets and Potential Drugs for Retinal Artery Occlusion: An Integrated Analysis in the UK Biobank21
Simultaneous Quantification of Apolipoprotein C-III O-Glycoforms by Protein-MRM21
De Novo Linear Phosphorylation Site Motifs for BCR-ABL Kinase Revealed by Phospho-Proteomics in Yeast21
RawVegetable 2.0: Refining XL-MS Data Acquisition through Enhanced Quality Control21
HyperSpec: Ultrafast Mass Spectra Clustering in Hyperdimensional Space21
AlacatDesigner─Computational Design of Peptide Concatamers for Protein Quantitation21
ClusterSheep: A Graphics Processing Unit-Accelerated Software Tool for Large-Scale Clustering of Tandem Mass Spectra from Shotgun Proteomics21
One-Pot Analytical Pipeline for Efficient and Sensitive Proteomic Analysis of Extracellular Vesicles21
Electrochemically Etched Tapered-Tip Stainless-Steel Electrospray-Ionization Emitters for Capillary Electrophoresis–Mass Spectrometry21
Caspase-9 Is a Positive Regulator of Osteoblastic Cell Migration Identified by diaPASEF Proteomics21
PepPre: Promote Peptide Identification Using Accurate and Comprehensive Precursors21
IQMMA: Efficient MS1 Intensity Extraction Pipeline Using Multiple Feature Detection Algorithms for DDA Proteomics20
Quantitative Proteomics Reveal the Inherent Antibiotic Resistance Mechanism against Norfloxacin Resistance in Aeromonas hydrophila20
The Combination of Quantitative Proteomics and Systems Genetics Analysis Reveals that PTN Is Associated with Sleep-Loss-Induced Cognitive Impairment20
Quantitative Proteomics for the Development and Manufacturing of Human-Induced Pluripotent Stem Cell-Derived Neural Stem Cells Using Data-Independent Acquisition Mass Spectrometry20
A Plasma Proteomics-Based Model for Identifying the Risk of Postpartum Depression Using Machine Learning20
Cerebrospinal Fluid Protein Biomarker Discovery in CLN320
EIF4G2 Promotes Hepatocellular Carcinoma Progression via IRES-dependent PLEKHA1 Translation Regulation20
Quantitative Proteomics Reveal the Mechanism of MiR-138–5p Suppressing Cervical Cancer via Targeting ZNF385A20
HyPep: An Open-Source Software for Identification and Discovery of Neuropeptides Using Sequence Homology Search20
High Throughput UHPLC-MS-Based Lipidomics Using Vacuum Jacketed Columns19
Potential Use of Serum Proteomics for Monitoring COVID-19 Progression to Complement RT-PCR Detection19
Proteomics Analysis of Knee Subchondral Bone Identifies Differentially Expressed Proteins Associated with Osteoarthritis19
Deep, Unbiased, and Quantitative Mass Spectrometry-Based Plasma Proteome Analysis of Individual Responses to mRNA COVID-19 Vaccine19
Quantitative Phosphoproteomics and Acetylomics of Safranal Anticancer Effects in Triple-Negative Breast Cancer Cells19
Insights into the Differential Preservation of Bone Proteomes in Inhumed and Entombed Cadavers from Italian Forensic Caseworks19
Proteomics of Serum Samples for the Exploration of the Pathological Mechanism of Obstetric Antiphospholipid Syndrome19
Spatial Omics Reveals that Cancer-Associated Glycan Changes Occur Early in Liver Disease Development in a Western Diet Mouse Model of MASLD19
Development of a Simple and Stable NanoESI Spray System Using Suction Wind from the MS Inlet18
Issue Editorial Masthead18
A Rapid One-Pot Workflow for Sensitive Microscale Phosphoproteomics18
Size-Dependent Separation of Extracellular Vesicle Subtypes with Exodisc Enabling Proteomic Analysis in Prostate Cancer18
Issue Editorial Masthead18
Identification of Blood Biomarkers in Ischemic Stroke by Integrated Analysis of Metabolomics and Proteomics18
MSLibrarian: Optimized Predicted Spectral Libraries for Data-Independent Acquisition Proteomics18
Discovering the N-Terminal Methylome by Repurposing of Proteomic Datasets18
Issue Editorial Masthead18
Deep Profiling of Plasma Proteoforms with Engineered Nanoparticles for Top-Down Proteomics18
Construction of Protein Sequence Databases for Metaproteomics: A Review of the Current Tools and Databases18
How to Train a Postprocessor for Tandem Mass Spectrometry Proteomics Database Search While Maintaining Control of the False Discovery Rate17
Toward an Ultimate Solution for Peptide Retention Time Prediction: The Effect of Column Temperature on Separation Selectivity17
Software-Assisted Data Processing Workflow for Intact Glycoprotein Mass Spectrometry17
SpectiCal: m/z Calibration of MS2 Peptide Spectra Using Known Low Mass Ions17
N-Terminomic Identification of Intracellular MMP-2 Substrates in Cardiac Tissue17
IL18R1-Related Molecules as Biomarkers for Asthma Severity and Prognostic Markers for Idiopathic Pulmonary Fibrosis17
Valuable Contributions and Lessons Learned from Proteomics and Metabolomics Studies of COVID-1917
Quantitative Acetylomics Reveals Substrates of Lysine Acetyltransferase GCN5 in Adult and Aging Drosophila17
Exploring the Effects of Probiotic Treatment on Urinary and Serum Metabolic Profiles in Healthy Individuals17
MGVB: a New Proteomics Toolset for Fast and Efficient Data Analysis17
1DE-MS Profiling for Proteoform-Correlated Proteomic Analysis, by Combining SDS-PAGE, Whole-Gel Slicing, Quantitative LC–MS/MS, and Reconstruction of Gel Distributions of Several Thousands of Proteins17
Metabolomics Meets Clinics: A Multivariate Analysis of Plasma and Urine Metabolic Signatures in Pulmonary Arterial Hypertension17
Alternative LC–MS/MS Platforms and Data Acquisition Strategies for Proteomic Genotyping of Human Hair Shafts17
Multiplet-Assisted Peak Alignment for 1H NMR-Based Metabolomics17
Identifying Sex-Specific Serum Patterns of Alzheimer’s Mice through Deep TMT Profiling and a Concentration-Dependent Concatenation Strategy17
NovoRank: Refinement for De Novo Peptide Sequencing Based on Spectral Clustering and Deep Learning17
LineageFilter: Improved Proteotyping of Complex Samples Using Metaproteomics and Machine Learning17
Data-Independent Acquisition-Based Quantitative Proteomics for Pairwise Comparison of Serum and Plasma16
Distinct Regions within SAP25 Recruit O-Linked Glycosylation, DNA Demethylation, and Ubiquitin Ligase and Hydrolase Activities to the Sin3/HDAC Complex16
Low-Invasive Sampling Method with Tape-Disc Sampling for the Taxonomic Identification of Archeological and Paleontological Bones by Proteomics16
AnnoDUF: A Web-Based Tool for Annotating Functions of Proteins Having Domains of Unknown Function16
Multidimensional Cross-Linking and Real-Time Informatics for Multiprotein Interaction Studies16
Impact of Static Myoblast Loading on Protein Secretion Linked to Tenocyte Migration16
S-Palmitoylation during Retinoic Acid-Induced Neuronal Differentiation of SH-SY5Y Neuroblastoma Cells16
Hybrid Quadrupole Mass Filter–Radial Ejection Linear Ion Trap and Intelligent Data Acquisition Enable Highly Multiplex Targeted Proteomics16
Subchronic Graphene Exposure Reshapes Skin Cell Metabolism16
Novel Deep Eutectic Solvent-Based Protein Extraction Method for Pottery Residues and Archeological Implications16
Merging Full-Spectrum and Fragment Ion Intensity Predictions from Deep Learning for High-Quality Spectral Libraries16
MSstats Version 4.0: Statistical Analyses of Quantitative Mass Spectrometry-Based Proteomic Experiments with Chromatography-Based Quantification at Scale15
Serum N-Glycan Signatures as Potential Biomarkers for the Detection and Monitoring of IgG4-Related Disease15
Precision Structural Interpretation of Site-Specific N-Glycans in Seminal Plasma15
Targeted Mass Spectrometry of Longitudinal Patient Sera Reveals LTBP1 as a Potential Surveillance Biomarker for High-Grade Serous Ovarian Carcinoma15
Adaptive Metabolism of Staphylococcus aureus Revealed by Untargeted Metabolomics15
Nonsevere Burn Induces a Prolonged Systemic Metabolic Phenotype Indicative of a Persistent Inflammatory Response Postinjury15
Sulfoproteomics Workflow with Precursor Ion Accurate Mass Shift Analysis Reveals Novel Tyrosine Sulfoproteins in the Golgi15
Issue Publication Information15
Precision-Engineered Nano-Electrospray Emitters Enhance Ionization Efficiency for Trap-Assisted Direct Infusion Mass Spectrometry: Application in Plasma Alzheimer’s Disease Proteomics15
PPI-Affinity: A Web Tool for the Prediction and Optimization of Protein–Peptide and Protein–Protein Binding Affinity15
Boosting the Sensitivity of Quantitative Single-Cell Proteomics with Infrared-Tandem Mass Tags15
Profiling Glutathionylome in CD38-Mediated Epithelial–Mesenchymal Transition15
LFQRatio: A Normalization Method to Decipher Quantitative Proteome Changes in Microbial Coculture Systems15
Issue Editorial Masthead15
Impact of Internal Fragments on Top-Down Analysis of Intact Proteins by 193 nm UVPD15
Ultrahigh-Resolution NMR with Water Signal Suppression for a Deeper Understanding of the Action of Antimetabolic Drugs on Diffuse Large B-Cell Lymphoma15
Issue Publication Information14
Evaluation of a Proteomics-Guided Protein Signature for Breast Cancer Detection in Breast Tissue14
Removal of Exogenous Stimuli Reveals a Canalization of Circadian Physiology in a Vertically Migrating Copepod14
Comparative Omics Reveals Unanticipated Metabolic Rearrangements in a High-Oil Mutant of Plastid Acetyl-CoA Carboxylase14
Magnetic Bead-Based Workflow for Sensitive and Streamlined Cell Surface Proteomics14
Non-Small Cell Lung Cancer Detection and Subtyping by UPLC-HRMS-Based Tissue Metabolomics14
Fasciola hepatica Cathepsin L Zymogens: Immuno-Proteomic Evidence for Highly Immunogenic Zymogen-Specific Conformational Epitopes to Support Diagnostics Development14
LC-Orbitrap HRMS-Based Proteomics Reveals Novel Mitochondrial Dynamics Regulatory Proteins Associated with RasV12-Induced Glioblastoma (GBM) of Drosophila14
Analysis of Brain Protein Stability Changes in a Mouse Model of Alzheimer’s Disease14
Issue Editorial Masthead14
Irradiation Causes Alterations of Polyamine, Purine, and Sulfur Metabolism in Red Blood Cells and Multiple Organs14
A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data14
Low-Abundance Serum Protein Biomarker Candidates for HCC in Patients with Liver Cirrhosis14
Use and Comparison of Machine Learning Techniques to Discern the Protein Patterns of Autoantibodies Present in Women with and without Breast Pathology14
O-GlcNAcylation: Sagacious Orchestrator of Bone-, Joint-, and Spine-Related Diseases14
Placental Proteomics Reveals an Elevated Level of Aldo-Keto Reductase 1-B1, Highlighting Its Potential Role in Spontaneous Preterm Birth14
Typic: A Practical and Robust Tool to Rank Proteotypic Peptides for Targeted Proteomics14
High-Coverage Metabolomics Reveals Gut Microbiota-Related Metabolic Traits of Type-2 Diabetes in Serum13
Dynamic Changes in Lymphocyte Subsets and Inflammation-Immune-Related Proteins in Patients with Thyroid Papillary Carcinoma before and after Radioactive Iodine Therapy13
Decoding the Impact of Isolation Window Selection and QuantUMS Filtering in DIA-NN for DIA Quantification of Peptides and Proteins13
SpaceANOVA: Spatial Co-occurrence Analysis of Cell Types in Multiplex Imaging Data Using Point Process and Functional ANOVA13
Traveling Wave Ion Mobility-Derived Collision Cross Section Database for Plant Specialized Metabolites: An Application to Ventilago harmandiana Pierre13
Novel Diagnostic Biomarkers for High-Grade Serous Ovarian Cancer Uncovered by Data-Independent Acquisition Mass Spectrometry13
Metabolomic, Proteomic, and Single-Cell Proteomic Analysis of Cancer Cells Treated with the KRASG12D Inhibitor MRTX113313
SPE-CZE-MS Quantifies Zeptomole Amounts of Phosphorylated Peptides13
MSstatsShiny: A GUI for Versatile, Scalable, and Reproducible Statistical Analyses of Quantitative Proteomic Experiments13
OCIAD2 Promotes Cancer Progression via Metabolic Reprogramming in Lung Adenocarcinoma13
Spatial Proteomic Profiling of Colorectal Cancer Revealed Its Tumor Microenvironment Heterogeneity13
Proximity Labeling, Quantitative Proteomics, and Biochemical Studies Revealed the Molecular Mechanism for the Inhibitory Effect of Indisulam on the Proliferation of Gastric Cancer Cells13
Coupling Proximity Biotinylation with Genomic Targeting to Characterize Locus-Specific Changes in Chromatin Environments13
AzidoTMT Enables Direct Enrichment and Highly Multiplexed Quantitation of Proteome-Wide Functional Residues13
Veneer Is a Webtool for Rapid, Standardized, and Transparent Interpretation, Annotation, and Reporting of Mammalian Cell Surface N-Glycocapture Data13
Dynamic Responses of Chromosome-Binding Protein Complexes to Meiotic Prophase I of Mouse Spermatocyte13
Proteomics and Metabolomics Reveal that an Abundant α-Glucosidase Drives Sorghum Fermentability for Beer Brewing13
Single Cell Analysis of Proteoforms13
Proteomics and Metabolic Characteristics of Boar Seminal Plasma Extracellular Vesicles Reveal Biomarker Candidates Related to Sperm Motility13
Tumor Lipid Signatures Are Descriptive of Acquisition of Therapy Resistance in an Endocrine-Related Breast Cancer Mouse Model12
Technical Evaluation of Plasma Proteomics Technologies12
Accelerating Proteomics Using Broad Specificity Proteases12
Flashlight into the Function of Unannotated C11orf52 using Affinity Purification Mass Spectrometry12
Optimizing a Diagnostic Model of Periodontitis by Using Targeted Proteomics12
Plasma Metabolomic Changes in Children with Cerebral Palsy Exposed to Botulinum Neurotoxin12
Efficient Indexing of Peptides for Database Search Using Tide12
Evaluating Proteomics Imputation Methods with Improved Criteria12
Analysis of Stratifin Expression and Proteome Variation in a Rat Model of Acute Lung Injury12
Deep Saliva Proteomics Elucidating the Pathogenesis of Early Childhood Caries and Identifying Biomarkers for Early Prediction12
Proteomics Platform Reveals Broad-Spectrum Nanobodies for SARS-CoV-2 Variant Neutralization12
Delineating Bovine Milk Derived Microvesicles from Exosomes Using Proteomics12
Comparative Proteomics Reveals Prolonged Corneal Preservation Impaired Ocular Surface Immunity Accompanied by Fibrosis in Human Stroma12
Untargeted Gut Metabolomics to Delve the Interplay between Selenium Supplementation and Gut Microbiota12
Orbitrap Mass Spectrometry and High-Field Asymmetric Waveform Ion Mobility Spectrometry (FAIMS) Enable the in-Depth Analysis of Human Serum Proteoforms12
Correction to “Mannose-6-Phosphate Isomerase Functional Status Shapes a Rearrangement in the Proteome and Degradome of Mannose-Treated Melanoma Cells”12
Identifying Links between Alzheimer’s Disease and Type 2 Diabetes through Proteomics12
Inactivation of Coronaviruses during Sample Preparation for Proteomics Experiments12
Proteomic Evolution from Acute to Post-COVID-19 Conditions12
Proximity Proteomics and Biochemical Analysis Reveal a Noncanonical Function for UFM1-Specific Protease 1 in the p62 Body Formation12
Correction to “The Curiosity of the Young”12
Development of an Optimized LC-MS Workflow for Host Cell Protein Characterization to Support Upstream Process Development12
Gel-Based Sample Fractionation with SP3-Purification for Top-Down Proteomics12
Machine Learning on Large-Scale Proteomics Data Identifies Tissue and Cell-Type Specific Proteins12
Characterization of the Functional Interplay between the BRD7 and BRD9 Homologues in mSWI/SNF Complexes12
Impact of Local Air Pressure on Ion Mobilities and Data Consistency in diaPASEF-Based High Throughput Proteomics12
Human Serum Alters the Metabolism and Antibiotic Susceptibility of Staphylococcus aureus12
Second Special Issue on Methods for Omics Research: Proteome Research and Beyond12
RNxQuest: An Extension to the xQuest Pipeline Enabling Analysis of Protein–RNA Cross-Linking/Mass Spectrometry Data12
Optimized and Robust Workflow for Quantifying the Canonical Histone Ubiquitination Marks H2AK119ub and H2BK120ub by LC–MS/MS12
Multiomics Analyses Reveal that Fatty Acid Metabolism and TCA Cycle Contribute to the Achievement of Functional Cure in Chronic Hepatitis B12
Exploring Top-Down Mass Spectrometric Approaches To Probe Forest Cobra (Naja melanoleuca) Venom Proteoforms11
IP-LC-MSMS Enables Identification of Three Tau O-GlcNAcylation Sites as O-GlcNAcase Inhibition Pharmacodynamic Readout in Transgenic Mice Overexpressing Human Tau11
Online Alkaline-pH Reverse Phase Nanoelectrospray-Tandem Mass Spectrometry Complements Conventional Low-pH Method for Global Proteomic Analysis11
Large-Scale Metabolite Imaging Gallery of Mouse Organ Tissues to Study Spatial Metabolism11
Correction to Spatial Multiomics of Lipids, N-Glycans, and Tryptic Peptides on a Single FFPE Tissue Section11
Issue Editorial Masthead11
Challenging Targets or Describing Mismatches? A Comment on Common Decoy Distribution by Madej et al.11
Serum Bile Acid Metabolites Predict the Therapeutic Effect of Mesalazine in Patients with Ulcerative Colitis11
Metabolic Profile of Individuals with and without Type 2 Diabetes from Sub-Saharan Africa11
Identification of Plasma Metabolites and Dipeptides as Diagnostic Biomarkers for Psoriasis Vulgaris through Liquid Chromatography-High Resolution Mass Spectrometry-Based Metabolomics11
Rapid Profiling of Protein Complex Reorganization in Perturbed Systems11
Correction to Glycosylation Profiling of Neoplastic Biomarker Alpha Fetoprotein through Intact Mass Protein Analysis11
Unphosphorylated Form of the PAQosome Core Subunit RPAP3 Binds Ribosomal Preassembly Complexes to Modulate Ribosome Biogenesis11
Rustims: An Open-Source Framework for Rapid Development and Processing of timsTOF Data-Dependent Acquisition Data11
The Role of Aromatic Amino Acids in Polycystic Ovary Syndrome through Patients’ Blood Metabolic Profiling: A Systematic Review of the Past Five Years11
Interactome of Site-Specifically Acetylated Linker Histone H111
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