Molecular & Cellular Proteomics

Article	Citations
mTORC2 Regulates Non-homologous End Joining Through Modulating the Temporal Dynamics of 53BP1	371
PS.67 Combined bulk and single-cell proteomics identifies novel protein dysfunctions in Alzheimer’s disease	296
PS.49 From spatial proteomics to spatial multiomics: leveraging spammR to integrate, analyze, and interpret mass spectrometry imaging data	185
PS.118 Identification of KRAS PROTACs Targeting GTP-loaded Alleles	148
PS.46 Algorithm-Powered Mass Spectrometry for Pathogen Identification	141
PROTEOMIC CHANGES TO THE ANTERIOR CEREBRAL ARTERY IN ALZHEIMER’S DISEASE	139
Table of Contents	138
Easier, More Robust, and Faster Low-flow Quantitative Proteomics Approach	113
CREB-Regulated Transcriptional Coactivator 2 Proteome Landscape is Modulated by SREBF1	108
A Multipathway Phosphopeptide Standard for Rapid Phosphoproteomics Assay Development	104
Clinical Proteomics for Solid Organ Tissues	93
LC-SRM Combined With Machine Learning Enables Fast Identification and Quantification of Bacterial Pathogens in Urinary Tract Infections	91
In-Cell Chemical Crosslinking Identifies Hotspots for SQSTM-1/p62-IκBα Interaction That Underscore a Critical Role of p62 in Limiting NF-κB Activation Through IκBα Stabilization	81
Proteomic Portrait of Degranulation Program in Human Circulating Neutrophils Upon Multi-Inflammatory and Infectious Activation	75
Prenylated PALM2 Promotes the Migration of Esophageal Squamous Cell Carcinoma Cells Through Activating Ezrin	73
Special Issue: Celebrating the Career of Donald F. Hunt	65
Spatial Proteomics Reveals Distinct Protein Patterns in Cortical Migration Disorders Caused by LIN28A Overexpression and WNT Activation	60
A Methanolic Urea-Enhanced Protein Extraction Enabling the Largest Bacterial Phosphorylation Resource	59
Quantitative Proteomic Analysis Reveals Functional Alterations of the Peripheral Immune System in Colorectal Cancer	56
Sequencing of Polyclonal Antibodies by Integrating Intact Mass, Middle–Down, and De Novo Bottom–Up Mass Spectrometry	55
NovoBoard: A Comprehensive Framework for Evaluating the False Discovery Rate and Accuracy of De Novo Peptide Sequencing	55
Temporal Wheat Proteome Remodeling by Deoxynivalenol Reveals Novel Detoxification Signatures and Strategies Across Cultivars	52
Exploring the Early Molecular Pathogenesis of Osteoarthritis Using Differential Network Analysis of Human Synovial Fluid	51
Employing Expression-Matched Controls Enables High-Confidence Proximity-Based Interactome Classification	49
Proteomic Characterization of Acute Myeloid Leukemia for Precision Medicine	49

Integrative Proteogenomics for Differential Expression and Splicing Variation in a DM1 Mouse Model	47
CellEKT: A Robust Chemical Proteomics Workflow to Profile Cellular Target Engagement of Kinase Inhibitors	47
Nuclear Factor I Family Members are Key Transcription Factors Regulating Gene Expression	46
Structural Premise of Selective Deubiquitinase USP30 Inhibition by Small-Molecule Benzosulfonamides	45
Region- and Cell-type–Resolved Multiomic Atlas of the Heart	45
Platelet Proteome Links Metabolism to Reactivity in Essential Thrombocythemia	45
Dynamic Proteomic Changes in Tumor and Immune Organs Reveal Systemic Immune Response to Tumor Development	43
Filter-Aided Extracellular Vesicle Enrichment (FAEVEr) for Proteomics	41
PRM-LIVE Accelerates Target Class-based Selectivity Profiling of Small Molecule Inhibitors	38
The rise of molecular glues and bifunctional compounds	38
Developing Cross-linking Mass Spectrometry to Define Protein Interaction Landscapes	38
High-throughput subcellular proteomics reveals phospho-signaling dynamics	38
WITHDRAWN	38
Toward Comprehensive, Single-molecule Proteomics: Protein Identification by Shortepitope Mapping	37
Proteogenomic analyses of CRISPR inhibited expression of a panel genes associated with Alzheimer's disease and related dementias in iPSC-derived neurons using a fully automated workflow	37
In Situ Cell-Surface Proteomics: Method Development and Applications in Neurobiology	37
Back Cover	36
PS.60 Proteomic translation and degradation screen of HECT E3 ligases reveals functional redundancies and exclusivity in E3-substrate relationships	36
Proteomics, Transcriptomics, and Phosphoproteomics Reveal the Mechanism of Talaroconvolutin-A Suppressing Bladder Cancer via Blocking Cell Cycle and Triggering Ferroptosis	35
2.1 Protein degraders: New insights and twists of molecular mechanism and drug design	35
A Peptidisc-Based Survey of the Plasma Membrane Proteome of a Mammalian Cell	35
A Proteomic Approach Identifies Isoform-Specific and Nucleotide-Dependent RAS Interactions	35
Proximity Labeling and SILAC-Based Proteomic Approach Identifies Proteins at the Interface of Homotypic and Heterotypic Cancer Cell Interactions	33
The in vivo Interaction Landscape of Histones H3.1 and H3.3	33
Deciphering Stiffness-Driven Changes in Colorectal Cancer by Proteomics	33
Integrative Proteomics and N-Glycoproteomics Analyses of Rheumatoid Arthritis Synovium Reveal Immune-Associated Glycopeptides	32
Proteins in Tumor-Derived Plasma Extracellular Vesicles Indicate Tumor Origin	31
Cerebrospinal Fluid Protein Markers Indicate Neuro-Damage in SARS-CoV-2-Infected Nonhuman Primates	31
Recent Advances in Mass Spectrometry-Based Studies of Post-Translational Modifications in Alzheimer’s Disease	30
Degradomic Identification of Membrane Type 1-Matrix Metalloproteinase as an ADAMTS9 and ADAMTS20 Substrate	30
HEXB Drives Raised Paucimannosylation in Colorectal Cancer and Stratifies Patient Risk	30
Development of a Fit-For-Purpose Multi-Marker Panel for Early Diagnosis of Pancreatic Ductal Adenocarcinoma	29
DIA-Based Phosphoproteomics Identifies Early Phosphorylation Events in Response to EGTA and Mannitol in Arabidopsis	29
Improved Mass Spectrometry–Based Methods Reveal Abundant Propionylation and Tissue-Specific Histone Propionylation Profiles	29
Recent Advances in Mass Spectrometry-Based Protein Interactome Studies	29
Bridging the Gap From Proteomics Technology to Clinical Application: Highlights From the 68th Benzon Foundation Symposium	29
Deep Learning Prediction Boosts Phosphoproteomics-Based Discoveries Through Improved Phosphopeptide Identification	29
Proteomic Diversity in Bacteria: Insights and Implications for Bacterial Identification	28
Relative Quantification of Proteins in Formalin-Fixed Paraffin-Embedded Breast Cancer Tissue Using Multiplexed Mass Spectrometry Assays	28
Proteome Profiling of Cerebrospinal Fluid and Machine Learning Reveal Protein Classifiers of Two Forms of Alzheimer’s Disease Characterized by Increased or Not Altered Levels of Tau	28
Cover	28
Multi-Omics Analysis Unveils Nsun5-Mediated Molecular Alterations in the Somatosensory Cortex and Its Impact on Pain Sensation	28
TIMAHAC: Streamlined Tandem IMAC-HILIC Workflow for Simultaneous and High-Throughput Plant Phosphoproteomics and N-glycoproteomics	28
Prospective on Imaging Mass Spectrometry in Clinical Diagnostics	28
Accurate MS-Based Diagnostic Amyloid Typing Using Endogenously Normalized Protein Intensities in Formalin-Fixed Paraffin-Embedded Tissue	27
Proteomic Identification of Autophagy Cargo Using Novel Tools in Combination with Quantitative Proteomics.	27
Assessment of Kinome-Wide Activity Remodeling upon Picornavirus Infection	27
Multi-nanoparticle Workflow Enables Deep Plasma Proteomics at Scale, with Enhanced Precision, and Depths of Coverage	27
Mapping diverse proteome responses with intelligent mass spectrometry	27
Highly multiplexed proteome-wide quantitation of functional residues enabled by a novel 11plex-AzidoTMT reagent	26

Mass spectrometry and SomaScan technologies to detect a plasma copper proteome in two human populations	26
Highly multiplexed label-free imaging of tissue proteoforms using individual ion mass spectrometry	26
PS.89 Antitumor and Pro-apoptotic Effects of Chetomin in Human Melanoma	25
Automated workflows for DIA data using DIA-NN on the PaSER platform	25
3.4 The Lysine L-Lactylation Pathway: Biochemistry, Epigenetics and Pathophysiology	24
PS.73 Parallel Accumulation Mobility Aligned Fragmentation Analysis Enables 1,000 Hz Speeds with 100% Ion Utilization for Fast and Sensitive Discovery Workflows	24
MS.6 Large-scale protein concentration profiling with MaxQuantAtlas	24
PS.9 Automated MagNet Enrichment Unlocks Deep and Cost-Effective LC-MS Plasma Proteomics	24
PS.21 Iodine monochloride as a probe of the proteome of the volatile odorant uptake pathway in insect olfaction	24
Table of Contents	24
In-Depth Analysis of miRNA Binding Sites Reveals the Complex Response of Uterine Epithelium to miR-26a-5p and miR-125b-5p During Early Pregnancy	23
An Automated Workflow to Address Proteome Complexity and the Large Search Space Problem in Proteomics and HLA-I Immunopeptidomics	23
MS.1 Using Quantitative Proteomics for Biodosimetry and the Assessment of Low Dose Radiation Exposure	23
The Role of Clinical Glyco(proteo)mics in Precision Medicine	23
PS.59 Impaired CO2-mediated Cerebral Blood Flow Regulation in the Absence of Hb βC93A in a Murine Model	23
Enhanced In Situ Spatial Proteomics by Effective Combination of MALDI Imaging and LC-MS/MS	22
From Discovery to Delivery: A Rapid and Targeted Proteomics Workflow for Monitoring Chinese Hamster Ovary Biomanufacturing	22
(Sialyl)Lewis Antigen Expression on Glycosphingolipids, N-, and O-Glycans in Colorectal Cancer Cell Lines is Linked to a Colon-Like Differentiation Program	22
The One Hour Human Proteome	22
Cover	22
Proteomic Analyses of Early Versus Advanced Primary Open Angle Glaucoma Uncover Biochemical Signatures Associated with Disease Staging	22
Cover	22
11th Asia Oceania Human Proteome Organization Congress Report	21
Deciphering the highly complex cancer immunopeptidome	21
3.6 Motif-Based Approaches for Analyzing Phosphoproteomic Mass Spectrometry Datasets Identify Signaling Dependencies in Cancers Lacking Known Oncogenic Drivers	21
Yellow Fever Blood Proteomics Study by Trapped Ion Mobility Mass Spectrometry	21
Mapping the Degradable Kinome: A Resource for Expedited Degrader Development	21
Computational challenges of identification and quantification algorithms in single-cell proteomic data.	21
Three-dimensional feature matching improves the sensitivity of single-cell and spatial proteomics	21
Back Cover	21
2.4 Defining Proteoform-Specific Interactions for Drug Targeting in a Native Cell Signalling Environment	21
4.9 The interface between metabolism and immunity within a virus microenvironment	20
Mapping Hydrogen Migration Thresholds for Site-Specific HDX-MS	20
PS.30 Unlocking next-generation insights in LC-MS based proteomics with a scalable and sustainable workflow strategy	20
PS.93 Profiling the Senescent Cell Surfaceome to Elucidate Senescence Biology and Identify Senotherapeutic Targets	20
PS.64 An Oncogenic Virus Drives Dynamic Alterations to the Tumor-Infection Microenvironment	20
PS.18 Expanded Coverage of Protein Post Translational Modifications Through Use of Complementary Proteases	20
Probing the sORF-Encoded Peptides of Deinococcus radiodurans in Response to Extreme Stress	19
Proteomics Data Imputation With a Deep Model That Learns From Many Datasets	19
Comparative Evaluation of Solid-phase and Membrane Mimetic Strategies in Membrane Proteome Coverage and Disease-State Analysis	19
Elucidating Fibroblast Growth Factor–Induced Kinome Dynamics Using Targeted Mass Spectrometry and Dynamic Modeling	19
Deep Learning Enhances Precision of Citrullination Identification in Human and Plant Tissue Proteomes	19
Proteome-Wide Monitoring of Drug Action in Living Cells Using a Novel Label-Free Solvent-Based Shift Assay	19
Protein Kinase Signaling Networks Driven by Oncogenic Gq/11 in Uveal Melanoma Identified by Phosphoproteomic and Bioinformatic Analyses	19
Proximity Labeling of the Tau Repeat Domain Enriches RNA-Binding Proteins That Are Altered in Alzheimer's Disease and Related Tauopathies	19
A Time Point Proteomic Analysis Reveals Protein Dynamics of Plasmodium Oocysts	19
Causal Inference and Annotation of Phosphoproteomics Data in Multiomics Cancer Studies	19
pXg: Comprehensive Identification of Noncanonical MHC-I–Associated Peptides From De Novo Peptide Sequencing Using RNA-Seq Reads	19
Chemical Proteomics Reveals Nε-Fatty-Acylation of Septins by Rho Inactivation Domain (RID) of the Vibrio MARTX Toxin to Alter Septin Localization and Organization	19
Generation of a Deep Mouse Brain Spectral Library for Transmembrane Proteome Profiling in Mental Disease Models	19
Combining Data Independent Acquisition With Spike-In SILAC (DIA-SiS) Improves Proteome Coverage and Quantification	19
Clinical Proteomics: A Promise Becoming Reality	18
Serendipity and the Slime Mold: A Visual Survey of High-Molecular-Weight Protein Assemblies Reveals the Structure of the Polyketide Synthase Pks16	18
Genetic Rescue of Disrupted Synaptic Protein Interaction Network Dynamics Following SYNGAP1 Reactivation	18
Whole Blood Proteome Dynamics Defines Predictive Diagnostic and Prognostic Signatures of Cryptococcal Infection	18
Properties, Origin, and Consistency of Truncated Proteoforms Across Top-Down Proteomic Studies	18
Integrated Immunopeptidomics and Proteomics Study of SARS-CoV-2–Infected Calu-3 Cells Reveals Dynamic Changes in Allele-specific HLA Abundance and Antigen Presentation	18
SIRT3 Functions as an Eraser of Histone H3K9 Lactylation to Modulate Transcription for Inhibiting the Progression of Esophageal Cancer	18
Improving the Depth and Reliability of Glycopeptide Identification Using Protein Prospector	18
TEAD Proteins Associate With DNA Repair Proteins to Facilitate Cellular Recovery From DNA Damage	18
Deciphering Spatial Protein–Protein Interactions in Brain Using Proximity Labeling	18
Application of stable isotope labelingbased quantitative PTM proteomics and interactomics in study of Arabidopsis cell signaling	17
Multi-omics Characterization of Acquired Olaparib Resistance in BRCA1 and BRCA2 Mutant Breast Cancer Cell Lines	17
WITHDRAWN	17
Cover	17
Phosphorylation Dynamics in a flg22-Induced, G Protein–Dependent Network Reveals the AtRGS1 Phosphatase	17
Tracking drug action at the cell surface and the secreted proteome	17
In-Cell Proteomics Enables High-Resolution Spatial and Temporal Mapping of Early Xenopus tropicalis Embryos	17
Jolkinolide B Activates Mitophagy to Exhibit Antipancreatic Cancer Activity and Alleviate Cognitive Deficits in Alzheimer's Disease	17
PS.2 Integrated Omics of Multiple Post-Translational Modifications Reveals Host Cellular Pathways and Therapeutic Targets in Coronavirus 229E Infection	16
MSstatsTMT Improves Accuracy of Thermal Proteome Profiling	16
Restrained Wnt Signaling Pathway by Enhanced EsGSK3β Activity Facilitates the Infection of Spiroplasma and Leads to Neuropathic Diseases in Crustaceans	16
Large-Scale Plasma Proteome Epitome Profiling is an Efficient Tool for the Discovery of Cancer Biomarkers	16
Early Life Exposure to Deltamethrin Impairs Synaptic Function by Altering the Brain-Derived Extracellular Vesicle Proteome	16
Trypanosoma cruzi cardiomyocyte infection promotes innate immune response and metabolic rewiring	16
PS.45 The dynamic TRPV2 ion channel proximity proteome reveals functional links of calcium flux with cellular adhesion factors NCAM and L1CAM in neurite outgrowth	16
Localized K63 Ubiquitin Signaling Is Regulated by VCP/p97 During Oxidative Stress	16
Uncommon N-Glycan Structures in Anhydrobiotic Tardigrades	16
Temporal Proteomic and Phosphoproteomic Profiling Deciphers Molecular Dynamics of Acute-to-Chronic Kidney Disease After Ischemia-Reperfusion Injury, With Dock2 Emerging as a Key Regulator	16
A New Monoclonal Antibody Enables BAR Analysis of Subcellular Importin β1 Interactomes	16

Complexome profiling of mitochondrial oxidative phosphorylation knockout models.	16
Zscan4 as a Candidate Conveyor of Early Developmental Defects in O-GlcNAc Transferase Intellectual Disability	16
AMPylation Regulates 5′-3′ Exonuclease PLD3 Processing	16
Landscape of Steroid Dynamics in Pregnancy: Insights From the Maternal-Placental-Fetal Unit and Placental Models	16
Comparative N-Glycoproteomics Reveals Subtype-Specific N-Glycosylation Signatures and Immune Associations in Cholangiocarcinoma	16
PS.85 C-COMPASS: A user-friendly neural network tool profiles cell compartments at protein and lipid levels	15
Sulconazole Induces PANoptosis by Triggering Oxidative Stress and Inhibiting Glycolysis to Increase Radiosensitivity in Esophageal Cancer	15
Phosphoproteomic Analysis of FLCN Inactivation Highlights Differential Kinase Pathways and Regulatory TFEB Phosphoserines	15
Analyzing N-Glycosylation Biosynthetic Networks Using Mass Spectrometry	15
WITHDRAWN	15
Antibody-based enrichment of phosphotyrosine peptides using magnetic beads simplifies and outperforms results obtained using Protein A agarose beads	15
The Biological Basis and Analyses of N-Glycan Microheterogeneity	15
An Automated Nanowell-Array Workflow for Quantitative Multiplexed Single-Cell Proteomics Sample Preparation at High Sensitivity	15
GRable Version 1.0: A Software Tool for Site-Specific Glycoform Analysis With Improved MS1-Based Glycopeptide Detection With Parallel Clustering and Confidence Evaluation With MS2 Information	15
Evaluating timsTOF Pro 2 for the analysis of histone PTMs measured in Global Chromatin Profiling using dia-PASEF and prm-PASEF	15
PS.116 Proteomic Profiling of Targeting ERK 1/2 and Vitamin A Signaling Pathways in Asthmatic Epithelial Cells for Airway Remodeling	15
msqrob2PTM: Differential Abundance and Differential Usage Analysis of MS-Based Proteomics Data at the Posttranslational Modification and Peptidoform Level	15
Quantification and Proteomic Characterization of β-Hydroxybutyrylation Modification in the Hearts of AMPKα2 Knockout Mice	15
Mass Spectrometry–Driven Discovery of Neuropeptides Mediating Nictation Behavior of Nematodes	15
WITHDRAWN	15
Robust and accurate redox metabolomics and proteomics of clinical samples by in situ derivatization of free thiols	15
Integrated Proteomics to Understand the Role of Neuritin (NRN1) as a Mediator of Cognitive Resilience to Alzheimer’s Disease	14
Experience-Induced Remodeling of the Hippocampal Post-synaptic Proteome and Phosphoproteome	14
Proteomic Analysis of Small Extracellular Vesicles From Lymphatic Affluents in Developing Premetastatic Niche in Melanoma	14
Comparative Proteome and Cis-Regulatory Element Analysis Reveals Specific Molecular Pathways Conserved in Dog and Human Brains	14
Proteome Mapping of the Human Pancreatic Islet Microenvironment Reveals Endocrine–Exocrine Signaling Sphere of Influence	14
Predicting Protein Pathways Associated to Tumor Heterogeneity by Correlating Spatial Lipidomics and Proteomics: The Dry Proteomic Concept	14
Exploring the Spatial Landscape of the Estrogen Receptor Proximal Proteome With Antibody-Based Proximity Labeling	14
Serum Exosomes From Epithelial Ovarian Cancer Patients Contain LRP1, Which Promotes the Migration of Epithelial Ovarian Cancer Cell	14
Challenges and Opportunities for Single-cell Computational Proteomics	14
Antibody Profiling of Pan-Cancer Viral Proteome Reveals Biomarkers for Nasopharyngeal Carcinoma Diagnosis and Prognosis	14
A Proteogenomic Pipeline for the Analysis of Protein Biosynthesis Errors in the Human Pathogen Candida albicans	14
Bioinertization of NanoLC/MS/MS Systems by Depleting Metal Ions From the Mobile Phases for Phosphoproteomics	14
High-Throughput Proteomic and Phosphoproteomic Analysis of Formalin-Fixed Paraffin-Embedded Tissues	14
Plasma Proteomic Profiling Was Used to Discover a Biochemical Recurrence Prediction Model for Prostate Cancer	14
PS.107 High-throughput peptide-centric local stability assay extends protein-ligand identification to membrane proteins, tissues, and bacteria	14
Infosomes as Inflammatory Mediators: Proteomic Profiling of Proteins Enriched in Inflammatory Extracellular Vesicles	14
Galectin-4 Antimicrobial Activity Primarily Occurs Through its C-Terminal Domain	14
Nucleolar Proteomics Revealed the Regulation of RNA Exosome Localization by MTR4	14
Cover	13
PS.15 Structural characterization of N-glycan isomers with α2-3 and α2-6 sialyl linkages in phosvitin, a highly phosphorylated protein found in egg yolk	13
MS.8 High-throughput perturbation proteomics with DIA for construction of AI virtual cells	13
inSPIRE: An Open-Source Tool for Increased Mass Spectrometry Identification Rates Using Prosit Spectral Prediction	13
Unified Workflow for the Rapid and In-Depth Characterization of Bacterial Proteomes	13
Cover	13
PS.25 Bioactive Constituents, Antioxidant and Anti-Inflammatory Effects of Uvaria chamae Stem Extracts on Carbon Tetrachloride-Induced Toxicity in Rats	13
Integrated Multiomics Reveals Alterations in Paucimannose and Complex Type N-Glycans in Cardiac Tissue of Patients with COVID-19	13
Exploring How Workflow Variations in Denaturation-Based Assays Impact Global Protein–Protein Interaction Predictions	13
PS.58 Simultaneous chemoproteomic and phosphoproteomic profiling uncovers changes in the Hippo pathway in drug resistance	13
Immunopeptidomics Mapping of Listeria monocytogenes T Cell Epitopes in Mice	13
PS.29 A Mass Tag Screening Platform Enables Pooled Evaluation of >5000 Mass Tags for plexDIA Applications and Beyond.	13
PS.40 Proteomic Analysis of Pancreatic Adaptations to 8:2 Fluorotelomer Alcohol (8:2 FTOH) Exposure in Male Mice Highlights Upregulation of Insulin Secretion	13
Single-Cell Proteomics Reveals Specific Cellular Subtypes in Cardiomyocytes Derived From Human iPSCs and Adult Hearts	13
Insight Into the Dynamics of the Ixodes ricinus Nymphal Midgut Proteome	13
Author Index	13
The Proteome of Large or Small Extracellular Vesicles in Pig Seminal Plasma Differs, Defining Sources and Biological Functions	13
PS.6 ENRICHplus enables enhanced plasma proteome coverage while preserving quantitative accuracy	13
PS.16 Advancing Protein Misfolding Prediction with Quantum Machine Learning: Implications for Cancer and Neurodegenerative Diseases	13
PS.104 High-sensitivity in vivo N-terminomics reveals novel caspase substrates involved in cell extrusion during apoptosis in Drosophila wing discs	13
Application of Liquid-Liquid Extraction for N-terminal Myristoylation Proteomics	13
Exploration of Nitrotyrosine-Containing Proteins and Peptides by Antibody-Based Enrichment Strategies	13
Global Proteomics Reveals Distinct Muscle Adaptations to Menstrual Cycle Phase-Based Sprint Interval Training in Endurance-Trained Females	12
Super Enhanced Purification of Denatured-Refolded Ubiquitinated Proteins by ThUBD Revealed Ubiquitinome Dysfunction in Liver Fibrosis	12
PS.75 Charting a nanoscale map of the human cell surface proteome using proximity labeling proteomics	12
Post-translational Modifications and Their Effects on the Conformation and Function of Hsp90 in Embryonic Stem Cells	12
Ciliopathy-Associated Missense Mutations in IFT140 are Tolerated by the Inherent Resilience of the IFT Machinery	12
Early Proteomic Characteristics and Changes in the Optic Nerve Head, Optic Nerve, and Retina in a Rat Model of Ocular Hypertension	12
Exploring Virus–Host Interactions Through Combined Proteomic Approaches Identifies BANF1 as a New Essential Factor for African Swine Fever Virus	12
Plasma Proteomic of Adolescent Idiopathic Scoliosis	12
Transcriptomics and Proteomics Identify Serotonin Transporter as a Promising Therapeutic Target for Essential Tremor	12
WITHDRAWN	12
Comprehensive Evaluation of Cleavable Bioorthogonal Probes for Site-Specific O-GlcNAc Proteomics	12
An Improved Method for Sampling and Quantitative Protein Analytics of Cerebrospinal Fluid of Individual Mice	12
An Introduction to Analytical Challenges, Approaches, and Applications in Mass Spectrometry–Based Secretomics	12
Editorial Board	12
An AI-driven leap forward in peptide identification through deconvolution of chimeric spectra	12
Profiling Proteins and Phosphorylation Sites During T Cell Activation Using an Integrated Thermal Shift Assay	12
Innovations Toward Immunopeptidomics	12
Serum N-Glycans as Independent Predictors of Death: A Prospective Investigation in the AEGIS Cohort	12
The Proteome and Phosphoproteome Uncovers Candidate Proteins Associated With Vacuolar Phosphate Signal Multipled by Vacuolar Phosphate Transporter 1 (VPT1) in Arabidopsis	12
Spatial Proteomics Reveals Differences in the Cellular Architecture of Antibody-Producing CHO and Plasma Cell–Derived Cells	12
LncRNA MALAT1 Facilitates HIV-1 Replication by Upregulation of CHCHD2 and Downregulation of IFN-I Expression	12
ZASP: A Highly Compatible and Sensitive ZnCl2 Precipitation-Assisted Sample Preparation Method for Proteomic Analysis	11
MS.9 Statistical methods increase the accuracy and the interpretability of quantitative proteomic investigations	11
4.4 Unlocking the Potential of Untargeted Plasma Proteomics for Lung Cancer: Translating Discovery to a Liquid Biopsy LDT	11
Urinary Proteomics Identifies ADAMDEC1 as a Non-Invasive Biomarker of Unstable Carotid Atherosclerotic Plaques	11
Cover	11
PS.78 Combination digests for immunoaffinity enrichment of ubiquitinated peptides	11
PS.92 Deep Spatial Proteomics of Primary Cilia: Unlocking Subcellular Proteome Composition with Nanoscale Precision	11
PS.22 Quantifying the Transcriptional Regulome Across Human Cell Types and Disease Contexts	11
Erratum for Protein Interaction Map of APOBEC3 Enzyme Family Reveals Deamination-Independent Role in Cellular Function	11
PS.62 Deciphering the role of the MyPhoNE SLiM of PP1R binding to PP1cβ.	11
PS.121 Refinement of DIA Workflow for Enhanced Proteomic Analysis of Human Intestinal Organoids	11
PS.51 Cell-Type-Specific Surfaceome Profiling of 100-500 Isolated Cells using a Droplet-Based Magnetic Affinity Purification System	11
Early Days in the Hunt Laboratory at UVA, 1969 to 1980	11