OOIR: Observatory of International Research

Papers

(The median citation count of Neuroinformatics is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-04-01 to 2025-04-01.)

Article	Citations
The Neuron Phenotype Ontology: A FAIR Approach to Proposing and Classifying Neuronal Types	132
Deep Learning Methods for Identification of White Matter Fiber Tracts: Review of State-of-the-Art and Future Prospective	71
NeuroCrypt: Machine Learning Over Encrypted Distributed Neuroimaging Data	37
Correction to: A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility	33
Building Models of Functional Interactions Among Brain Domains that Encode Varying Information Complexity: A Schizophrenia Case Study	32
Decentralized Brain Age Estimation Using MRI Data	28
A Measure of Concurrent Neural Firing Activity Based on Mutual Information	28
ABLE: Automated Brain Lines Extraction Based on Laplacian Surface Collapse	26
Deconvolution of the Functional Ultrasound Response in the Mouse Visual Pathway Using Block-Term Decomposition	25
On the Long-term Archiving of Research Data	25
Estimating the Parameters of the Epileptor Model for Epileptic Seizure Suppression	24
Scan Once, Analyse Many: Using Large Open-Access Neuroimaging Datasets to Understand the Brain	23
Cortical Representation of Touch in Silico	22
ABCD_Harmonizer: An Open-source Tool for Mapping and Controlling for Scanner Induced Variance in the Adolescent Brain Cognitive Development Study	19
Neuroimaging-ITM: A Text Mining Pipeline Combining Deep Adversarial Learning with Interaction Based Topic Modeling for Enabling the FAIR Neuroimaging Study	16
NiftyPAD - Novel Python Package for Quantitative Analysis of Dynamic PET Data	14
A Practical Workflow for Organizing Clinical Intraoperative and Long-term iEEG Data in BIDS	14
Localization and Registration of 2D Histological Mouse Brain Images in 3D Atlas Space	14
Towards Automated Brain Aneurysm Detection in TOF-MRA: Open Data, Weak Labels, and Anatomical Knowledge	14
Modelling Cortical Laminar Connectivity in the Macaque Brain	12
Cross-validated Adaboost Classification of Emotion Regulation Strategies Identified by Spectral Coherence in Resting-State	12
Pitfalls and Recommended Strategies and Metrics for Suppressing Motion Artifacts in Functional MRI	11
Comparison of Three Automated Approaches for Classification of Amyloid-PET Images	11
RS-FetMRI: a MATLAB-SPM Based Tool for Pre-processing Fetal Resting-State fMRI Data	11
Semi-Automated Quantitative Evaluation of Neuron Developmental Morphology In Vitro Using the Change-Point Test	10

TE-HI-GCN: An Ensemble of Transfer Hierarchical Graph Convolutional Networks for Disorder Diagnosis	9
Validation Through Collaboration: Encouraging Team Efforts to Ensure Internal and External Validity of Computational Models of Biochemical Pathways	9
Stable Deep Neural Network Architectures for Mitochondria Segmentation on Electron Microscopy Volumes	8
ENIGMA + COINSTAC: Improving Findability, Accessibility, Interoperability, and Re-usability	8
Deep Learning Classification of Treatment Response in Diabetic Painful Neuropathy: A Combined Machine Learning and Magnetic Resonance Neuroimaging Methodological Study	8
EBRAINS Live Papers - Interactive Resource Sheets for Computational Studies in Neuroscience	8
Population-Average Brain Templates and Application to Automated Voxel-Wise Analysis Pipelines for Cynomolgus Macaque	8
Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (odc-sci.org)	8
A Comparison of Cranial Cavity Extraction Tools for Non-contrast Enhanced CT Scans in Acute Stroke Patients	7
Correction to: 3dSpAn: An interactive software for 3D segmentation and analysis of dendritic spines	7
High-throughput Analysis of Synaptic Activity in Electrically Stimulated Neuronal Cultures	7
Federated Analysis of Neuroimaging Data: A Review of the Field	7
Multimodal Autoencoder Predicts fNIRS Resting State From EEG Signals	7
Analysis of Network Models with Neuron-Astrocyte Interactions	7
Separating Neural Oscillations from Aperiodic 1/f Activity: Challenges and Recommendations	7
Correction to: Geometric Reliability of Super-Resolution Reconstructed Images from Clinical Fetal MRI in the Second Trimester	7
Scalable Query Answering Under Uncertainty to Neuroscientific Ontological Knowledge: The NeuroLang Approach	7
Automatic Detection of Alzheimer's Disease using Deep Learning Models and Neuro-Imaging: Current Trends and Future Perspectives	7
Design and Application of Automated Algorithms for Diagnosis and Treatment Optimization in Neurodegenerative Diseases	6
Geometric Reliability of Super-Resolution Reconstructed Images from Clinical Fetal MRI in the Second Trimester	6
Volume Reduction Techniques for the Classification of Independent Components of rs-fMRI Data: a Study with Convolutional Neural Networks	6
A Fast Transform for Brain Connectivity Difference Evaluation	6
Multi-Subject Analysis for Brain Developmental Patterns Discovery via Tensor Decomposition of MEG Data	6
Extreme Learning Machine Design for Dealing with Unrepresentative Features	6
A Learning Based Framework for Disease Prediction from Images of Human-Derived Pluripotent Stem Cells of Schizophrenia Patients	6
FAIRSCAPE: a Framework for FAIR and Reproducible Biomedical Analytics	5
Single Neuron Modeling Identifies Potassium Channel Modulation as Potential Target for Repetitive Head Impacts	5
Funcmasker-flex: An Automated BIDS-App for Brain Segmentation of Human Fetal Functional MRI data	5
Inferring Brain State Dynamics Underlying Naturalistic Stimuli Evoked Emotion Changes With dHA-HMM	5
Editorial: What the New White House Rules on Equitable Access Mean for the Neurosciences	5
Real-time and Recursive Estimators for Functional MRI Quality Assessment	5
Co-alteration Network Architecture of Major Depressive Disorder: A Multi-modal Neuroimaging Assessment of Large-scale Disease Effects	5
Towards an Architecture of a Multi-purpose, User-Extendable Reference Human Brain Atlas	5
Editorial	5
Auto-encoded Latent Representations of White Matter Streamlines for Quantitative Distance Analysis	4
Assessing the Repeatability of Multi-Frequency Multi-Layer Brain Network Topologies Across Alternative Researcher’s Choice Paths	4
Building FAIR Functionality: Annotating Events in Time Series Data Using Hierarchical Event Descriptors (HED)	4
Correction to: Bayesian Coherence Analysis for Microcircuit Structure Learning	4
Chronic Mild Traumatic Brain Injury: Aberrant Static and Dynamic Connectomic Features Identified Through Machine Learning Model Fusion	4
Federated Analysis in COINSTAC Reveals Functional Network Connectivity and Spectral Links to Smoking and Alcohol Consumption in Nearly 2,000 Adolescent Brains	4
Integrating Multimodal and Longitudinal Neuroimaging Data with Multi-Source Network Representation Learning	4
Consent Codes: Maintaining Consent in an Ever-expanding Open Science Ecosystem	4
Dementia in Convolutional Neural Networks: Using Deep Learning Models to Simulate Neurodegeneration of the Visual System	4
Automated Brain Masking of Fetal Functional MRI with Open Data	4
3dSpAn: An interactive software for 3D segmentation and analysis of dendritic spines	4
Correction to: Multi-Subject Analysis for Brain Developmental Patterns Discovery via Tensor Decomposition of MEG Data	4
The C-BIG Repository: an Institution-Level Open Science Platform	4
An Algorithm Based on a Cable-Nernst Planck Model Predicting Synaptic Activity throughout the Dendritic Arbor with Micron Specificity	4