OOIR: Observatory of International Research

Papers

(The median citation count of Neuroinformatics is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-04-01 to 2024-04-01.)

Article	Citations
Separating Neural Oscillations from Aperiodic 1/f Activity: Challenges and Recommendations	60
Classification of Contrasting Discrete Emotional States Indicated by EEG Based Graph Theoretical Network Measures	52
MEArec: A Fast and Customizable Testbench Simulator for Ground-truth Extracellular Spiking Activity	32
Review of Riemannian Distances and Divergences, Applied to SSVEP-based BCI	30
Deep Learning Model for the Automated Detection and Histopathological Prediction of Meningioma	29
An Optimized Mouse Brain Atlas for Automated Mapping and Quantification of Neuronal Activity Using iDISCO+ and Light Sheet Fluorescence Microscopy	28
3D Deep Neural Network Segmentation of Intracerebral Hemorrhage: Development and Validation for Clinical Trials	28
Cross-validated Adaboost Classification of Emotion Regulation Strategies Identified by Spectral Coherence in Resting-State	28
DeepNeuro: an open-source deep learning toolbox for neuroimaging	24
GTree: an Open-source Tool for Dense Reconstruction of Brain-wide Neuronal Population	24
Automated Brain Masking of Fetal Functional MRI with Open Data	22
A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility	22
Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data	21
Evolution of Human Brain Atlases in Terms of Content, Applications, Functionality, and Availability	21
A Systematic Evaluation of Interneuron Morphology Representations for Cell Type Discrimination	20
TE-HI-GCN: An Ensemble of Transfer Hierarchical Graph Convolutional Networks for Disorder Diagnosis	20
Reproducible Evaluation of Diffusion MRI Features for Automatic Classification of Patients with Alzheimer’s Disease	18
DREAM	17
Scan Once, Analyse Many: Using Large Open-Access Neuroimaging Datasets to Understand the Brain	15
Colocalization Colormap –an ImageJ Plugin for the Quantification and Visualization of Colocalized Signals	15
Automatic Detection of Alzheimer's Disease using Deep Learning Models and Neuro-Imaging: Current Trends and Future Perspectives	15
Cross-Sectional Volumes and Trajectories of the Human Brain, Gray Matter, White Matter and Cerebrospinal Fluid in 9473 Typically Aging Adults	13
DeepDicomSort: An Automatic Sorting Algorithm for Brain Magnetic Resonance Imaging Data	13
Stable Deep Neural Network Architectures for Mitochondria Segmentation on Electron Microscopy Volumes	12
Addressing Pitfalls in Phase-Amplitude Coupling Analysis with an Extended Modulation Index Toolbox	12

Improved Segmentation of the Intracranial and Ventricular Volumes in Populations with Cerebrovascular Lesions and Atrophy Using 3D CNNs	12
Deep Learning‐based Classification of Resting‐state fMRI Independent‐component Analysis	12
How Machine Learning is Powering Neuroimaging to Improve Brain Health	11
Pandora: 4-D White Matter Bundle Population-Based Atlases Derived from Diffusion MRI Fiber Tractography	11
SHYBRID: A Graphical Tool for Generating Hybrid Ground-Truth Spiking Data for Evaluating Spike Sorting Performance	11
Petabyte-Scale Multi-Morphometry of Single Neurons for Whole Brains	11
Multimodal Autoencoder Predicts fNIRS Resting State From EEG Signals	11
Decentralized Multisite VBM Analysis During Adolescence Shows Structural Changes Linked to Age, Body Mass Index, and Smoking: a COINSTAC Analysis	11
An MRI-Based, Data-Driven Model of Cortical Laminar Connectivity	11
DeepMapi: a Fully Automatic Registration Method for Mesoscopic Optical Brain Images Using Convolutional Neural Networks	10
FEMfuns: A Volume Conduction Modeling Pipeline that Includes Resistive, Capacitive or Dispersive Tissue and Electrodes	10
Federated Analysis of Neuroimaging Data: A Review of the Field	10
pyPheWAS: A Phenome-Disease Association Tool for Electronic Medical Record Analysis	9
Federated Analysis in COINSTAC Reveals Functional Network Connectivity and Spectral Links to Smoking and Alcohol Consumption in Nearly 2,000 Adolescent Brains	9
Multiple Functional Brain Networks Related to Pain Perception Revealed by fMRI	8
EBRAINS Live Papers - Interactive Resource Sheets for Computational Studies in Neuroscience	8
RippleNet: a Recurrent Neural Network for Sharp Wave Ripple (SPW-R) Detection	8
Human Brain Atlases in Stroke Management	8
Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (odc-sci.org)	8
A Practical Workflow for Organizing Clinical Intraoperative and Long-term iEEG Data in BIDS	8
Towards Automated Brain Aneurysm Detection in TOF-MRA: Open Data, Weak Labels, and Anatomical Knowledge	8
Generating Longitudinal Atrophy Evaluation Datasets on Brain Magnetic Resonance Images Using Convolutional Neural Networks and Segmentation Priors	7
Automated Head Tissue Modelling Based on Structural Magnetic Resonance Images for Electroencephalographic Source Reconstruction	7
NeuroCrypt: Machine Learning Over Encrypted Distributed Neuroimaging Data	7
MEA-ToolBox: an Open Source Toolbox for Standardized Analysis of Multi-Electrode Array Data	7
RT-NET: real-time reconstruction of neural activity using high-density electroencephalography	7
Excavating FAIR Data: the Case of the Multicenter Animal Spinal Cord Injury Study (MASCIS), Blood Pressure, and Neuro-Recovery	7
3dSpAn: An interactive software for 3D segmentation and analysis of dendritic spines	7
A Comparative Analysis of MRI Automated Segmentation of Subcortical Brain Volumes in a Large Dataset of Elderly Subjects	6
Neuroimaging PheWAS (Phenome-Wide Association Study): A Free Cloud-Computing Platform for Big-Data, Brain-Wide Imaging Association Studies	6
supFunSim: Spatial Filtering Toolbox for EEG	6
Controlling for Spurious Nonlinear Dependence in Connectivity Analyses	6
Multimodal 3D Mouse Brain Atlas Framework with the Skull-Derived Coordinate System	5
Automatic Cerebral Hemisphere Segmentation in Rat MRI with Ischemic Lesions via Attention-based Convolutional Neural Networks	5
Axonal Tree Morphology and Signal Propagation Dynamics Improve Interneuron Classification	5
Transfer, Collection and Organisation of Electrophysiological and Imaging Data for Multicentre Studies	5
Predicting Synaptic Connectivity for Large-Scale Microcircuit Simulations Using Snudda	5
A Graph-Based Nonlinear Dynamic Characterization of Motor Imagery Toward an Enhanced Hybrid BCI	5
Towards an Architecture of a Multi-purpose, User-Extendable Reference Human Brain Atlas	5
Fast Estimation of L1-Regularized Linear Models in the Mass-Univariate Setting	5
Assessing Computational Methods to Quantify Mother-Child Brain Synchrony in Naturalistic Settings Based on fNIRS Signals	5
Convolutional Neural Network Based Frameworks for Fast Automatic Segmentation of Thalamic Nuclei from Native and Synthesized Contrast Structural MRI	5
The C-BIG Repository: an Institution-Level Open Science Platform	5
BVAR-Connect: A Variational Bayes Approach to Multi-Subject Vector Autoregressive Models for Inference on Brain Connectivity Networks	5
Altered Connectedness of the Brain Chronnectome During the Progression to Alzheimer’s Disease	4
Inferring Brain State Dynamics Underlying Naturalistic Stimuli Evoked Emotion Changes With dHA-HMM	4
Prediction of a Cell-Class-Specific Mouse Mesoconnectome Using Gene Expression Data	4
Pitfalls and Recommended Strategies and Metrics for Suppressing Motion Artifacts in Functional MRI	4
Intelligible Models for HealthCare: Predicting the Probability of 6-Month Unfavorable Outcome in Patients with Ischemic Stroke	4
Comparing Automated Morphology Quantification Software on Dendrites of Uninjured and Injured Drosophila Neurons	4

Analysis of Network Models with Neuron-Astrocyte Interactions	4
Modelling Cortical Laminar Connectivity in the Macaque Brain	4
Cortical Representation of Touch in Silico	4
A Comprehensive, FAIR File Format for Neuroanatomical Structure Modeling	4
Improving Covariance Matrices Derived from Tiny Training Datasets for the Classification of Event-Related Potentials with Linear Discriminant Analysis	4
RS-FetMRI: a MATLAB-SPM Based Tool for Pre-processing Fetal Resting-State fMRI Data	4
ENIGMA + COINSTAC: Improving Findability, Accessibility, Interoperability, and Re-usability	4
Correction to: A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility	4
Super-resolution Segmentation Network for Reconstruction of Packed Neurites	4
Shamo: A Tool for Electromagnetic Modeling, Simulation and Sensitivity Analysis of the Head	3
The Location Reliability of the Resting-State fMRI FC of Emotional Regions Towards rTMS Therapy	3
Confounding Effects on the Performance of Machine Learning Analysis of Static Functional Connectivity Computed from rs-fMRI Multi-site Data	3
Tractography Processing with the Sparse Closest Point Transform	3
Auto-encoded Latent Representations of White Matter Streamlines for Quantitative Distance Analysis	3
A Modular Workflow for Model Building, Analysis, and Parameter Estimation in Systems Biology and Neuroscience	3
Complexity of Brain Dynamics as a Correlate of Consciousness in Anaesthetized Monkeys	3
Integrating Multimodal and Longitudinal Neuroimaging Data with Multi-Source Network Representation Learning	3
Real-time and Recursive Estimators for Functional MRI Quality Assessment	3
NEURO-LEARN: a Solution for Collaborative Pattern Analysis of Neuroimaging Data	3
Correction to: Reproducible Inter-Personal Brain Coupling Measurements in Hyperscanning Settings With functional Near Infra-Red Spectroscopy	3
nGauge: Integrated and Extensible Neuron Morphology Analysis in Python	3
Computing Univariate Neurodegenerative Biomarkers with Volumetric Optimal Transportation: A Pilot Study	3
Building FAIR Functionality: Annotating Events in Time Series Data Using Hierarchical Event Descriptors (HED)	3