OOIR: Observatory of International Research

Papers

(The H4-Index of IEEE-ACM Transactions on Computational Biology and Bioinformatics is 41. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-10-01 to 2025-10-01.)

Article	Citations
Contrasting Multi-Source Temporal Knowledge Graphs for Biomedical Hypothesis Generation	535
POPBic: Pathway-Based Order Preserving Biclustering Algorithm Towards the Analysis of Gene Expression Data	152
New Labeling Methods for Deep Learning Real-Valued Inter-Residue Distance Prediction	123
Prediction of Transcription Factor Binding Sites With an Attention Augmented Convolutional Neural Network	101
Row and Column Structure-Based Biclustering for Gene Expression Data	86
Inference of a Dynamic Aging-related Biological Subnetwork via Network Propagation	81
Data-Driven and Knowledge-Based Algorithms for Gene Network Reconstruction on High-Dimensional Data	76
ELMo4m6A: A Contextual Language Embedding-Based Predictor for Detecting RNA N6-Methyladenosine Sites	71
An Ensemble Tf-Idf Based Approach to Protein Function Prediction via Sequence Segmentation	70
Seq-BEL: Sequence-Based Ensemble Learning for Predicting Virus-Human Protein-Protein Interaction	70
Analysis of Cancer-Associated Mutations of POLB Using Machine Learning and Bioinformatics	69
The Determination of Distinctive Single Nucleotide Polymorphism Sets for the Diagnosis of Behçet's Disease	68
IGNSCDA: Predicting CircRNA-Disease Associations Based on Improved Graph Convolutional Network and Negative Sampling	68
VMF-SSD: A Novel V-Space Based Multi-Scale Feature Fusion SSD for Apple Leaf Disease Detection	63
Protein-Protein Interaction Sites Prediction Using Batch Normalization Based CNNs and Oversampling Method Borderline-SMOTE	62
Gene Co-Expression Networks Offer New Perspectives on Sepsis Pathophysiology	61
Modality-DTA: Multimodality Fusion Strategy for Drug–Target Affinity Prediction	58
Predicting Drug-Drug Interactions Based on Integrated Similarity and Semi-Supervised Learning	57
scBKAP: A Clustering Model for Single-Cell RNA-Seq Data Based on Bisecting K-Means	56
Prediction of circRNA-MiRNA Association Using Singular Value Decomposition and Graph Neural Networks	56
An Effective Swarm Intelligence Optimization Algorithm for Flexible Ligand Docking	55
Compressed Sparse FM-Index: Fast Sequence Alignment Using Large K-Steps	55
GraphPlas: Refined Classification of Plasmid Sequences Using Assembly Graphs	53
Higher-Order Proximity-Based MiRNA-Disease Associations Prediction	52
IPP: An Intelligent Privacy-Preserving Scheme for Detecting Interactions in Genome Association Studies	51

Graph Convolutional Auto-Encoders for Predicting Novel lncRNA-Disease Associations	50
Hybrid Projective Synchronization via PI Controller Based on DNA Strand Displacement	49
WVDL: Weighted Voting Deep Learning Model for Predicting RNA-Protein Binding Sites	49
Subgroup Identification Using Virtual Twins for Human Microbiome Studies	49
An Approach of Epistasis Detection Using Integer Linear Programming Optimizing Bayesian Network	48
Automated Spot Counting in Microbiology	48
Fine-Grained Lesion Classification Framework for Early Auxiliary Diagnosis	48
Spatial Stochastic Model of the Pre-B Cell Receptor	47
A Multi-Task Deep Feature Selection Method for Brain Imaging Genetics	47
PseU-KeMRF: A Novel Method for Identifying RNA Pseudouridine Sites	44
A Neighborhood-Based Global Network Model to Predict Drug-Target Interactions	43
RNPredATC: A Deep Residual Learning-Based Model With Applications to the Prediction of Drug-ATC Code Association	43
NMTF-DTI: A Nonnegative Matrix Tri-factorization Approach With Multiple Kernel Fusion for Drug-Target Interaction Prediction	43
CIPHER-SC: Disease-Gene Association Inference Using Graph Convolution on a Context-Aware Network With Single-Cell Data	42
Self-Supervised Learning for Label Sparsity in Computational Drug Repositioning	42
Deep Learning in Gene Regulatory Network Inference: A Survey	42
SGNet: Sequence-Based Convolution and Ligand Graph Network for Protein Binding Affinity Prediction	41
Identifying Molecular Biomarkers for Diseases With Machine Learning Based on Integrative Omics	41
Feature Fusion GAN Based Virtual Staining on Plant Microscopy Images	41
State Observer Design of Coupled Genetic Regulatory Networks With Reaction-Diffusion Terms via Time-Space Sampled-Data Communications	41