IEEE-ACM Transactions on Computational Biology and Bioinformatics

Papers
(The H4-Index of IEEE-ACM Transactions on Computational Biology and Bioinformatics is 41. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-08-01 to 2026-08-01.)
ArticleCitations
Contrasting Multi-Source Temporal Knowledge Graphs for Biomedical Hypothesis Generation119
New Labeling Methods for Deep Learning Real-Valued Inter-Residue Distance Prediction114
Gene Co-Expression Networks Offer New Perspectives on Sepsis Pathophysiology95
Prediction of circRNA-MiRNA Association Using Singular Value Decomposition and Graph Neural Networks93
ELMo4m6A: A Contextual Language Embedding-Based Predictor for Detecting RNA N6-Methyladenosine Sites93
Prediction of Transcription Factor Binding Sites With an Attention Augmented Convolutional Neural Network86
scBKAP: A Clustering Model for Single-Cell RNA-Seq Data Based on Bisecting K-Means86
An Effective Swarm Intelligence Optimization Algorithm for Flexible Ligand Docking82
Modality-DTA: Multimodality Fusion Strategy for Drug–Target Affinity Prediction81
Hybrid Projective Synchronization via PI Controller Based on DNA Strand Displacement69
Analysis of Cancer-Associated Mutations of POLB Using Machine Learning and Bioinformatics67
VMF-SSD: A Novel V-Space Based Multi-Scale Feature Fusion SSD for Apple Leaf Disease Detection67
Protein-Protein Interaction Sites Prediction Using Batch Normalization Based CNNs and Oversampling Method Borderline-SMOTE65
IGNSCDA: Predicting CircRNA-Disease Associations Based on Improved Graph Convolutional Network and Negative Sampling64
An Ensemble Tf-Idf Based Approach to Protein Function Prediction via Sequence Segmentation61
IPP: An Intelligent Privacy-Preserving Scheme for Detecting Interactions in Genome Association Studies61
PseU-KeMRF: A Novel Method for Identifying RNA Pseudouridine Sites60
Predator: Predicting the Impact of Cancer Somatic Mutations on Protein-Protein Interactions58
Feature Fusion GAN Based Virtual Staining on Plant Microscopy Images56
State Observer Design of Coupled Genetic Regulatory Networks With Reaction-Diffusion Terms via Time-Space Sampled-Data Communications56
An Approach of Epistasis Detection Using Integer Linear Programming Optimizing Bayesian Network53
Minimum Functional Length Analysis of K-Mer Based on BPNN52
Automated Spot Counting in Microbiology49
Subgroup Identification Using Virtual Twins for Human Microbiome Studies48
Analyzing Effect of Multi-Modality in Predicting Protein-Protein Interactions48
Spatial Stochastic Model of the Pre-B Cell Receptor47
A Multi-Task Deep Feature Selection Method for Brain Imaging Genetics47
WVDL: Weighted Voting Deep Learning Model for Predicting RNA-Protein Binding Sites46
Blockchain-Based Data Access Security Solutions for Medical Wearables45
SGNet: Sequence-Based Convolution and Ligand Graph Network for Protein Binding Affinity Prediction45
TransCrispr: Transformer Based Hybrid Model for Predicting CRISPR/Cas9 Single Guide RNA Cleavage Efficiency45
Improving Biomedical Question Answering by Data Augmentation and Model Weighting44
Self-Supervised Learning for Label Sparsity in Computational Drug Repositioning44
Fine-Grained Lesion Classification Framework for Early Auxiliary Diagnosis44
NMTF-DTI: A Nonnegative Matrix Tri-factorization Approach With Multiple Kernel Fusion for Drug-Target Interaction Prediction43
Transfer Learning Based Lightweight Ensemble Model for Imbalanced Breast Cancer Classification43
DGANDDI: Double Generative Adversarial Networks for Drug-Drug Interaction Prediction43
Robust and Privacy-Preserving Decentralized Deep Federated Learning Training: Focusing on Digital Healthcare Applications41
Morphological Rule-Constrained Object Detection of Key Structures in Infant Fundus Image41
Deep Learning in Gene Regulatory Network Inference: A Survey41
RNPredATC: A Deep Residual Learning-Based Model With Applications to the Prediction of Drug-ATC Code Association41
PSPGO: Cross-Species Heterogeneous Network Propagation for Protein Function Prediction41
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