RNA Biology

Article	Citations
CNOT1 regulates circadian behaviour through Per2 mRNA decay in a deadenylation-dependent manner	91
Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genes	62
Shortened CRISPR-Cas9 arrays enable multiplexed gene targeting in bacteria from a smaller DNA footprint	54
An overview of RNA splicing and functioning of splicing factors in land plant chloroplasts	53
Alternative splicing diversifies the transcriptome and proteome of the rice blast fungus during host infection	53
Interplays of different types of epitranscriptomic mRNA modifications	51
Synthetic RNA biology	47
RNA polymerase I mutant affects ribosomal RNA processing and ribosomal DNA stability	45
Architectures and complex functions of tandem riboswitches	39
Identification of deleterious non-synonymous single nucleotide polymorphisms in the mRNA decay activator ZFP36L2	38
Endonucleolytic processing plays a critical role in the maturation of ribosomal RNA in Methanococcus maripaludis	37
RNA therapeutics	33
A translational repression reporter assay for the analysis of RNA-binding protein consensus sites	32
The Dihydrouridine landscape from tRNA to mRNA: a perspective on synthesis, structural impact and function	30
Regulation of CCR4-NOT complex deadenylase activity and cellular responses by MK2-dependent phosphorylation of CNOT2	30
PacBio full-length transcriptome analysis provides new insights into transcription of chloroplast genomes	30
Selectivity of Exportin 5 binding to human precursor microRNAs	29
The secret life of RNA and lipids	28
BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification	28
Wide-spectrum profiling of plasma cell-free RNA and the potential for health-monitoring	27
Assessment of different enrichment methods revealed the optimal approach to identify bovine circRnas	25
Defining the methanogenic SECIS element in vivo by targeted mutagenesis	24
Efficient fractionation and analysis of ribosome assembly intermediates in human cells	24
European COST action CA16120 EPITRAN: the first four years and beyond	24
Synthetic biology tools to promote the folding and function of RNA aptamers in mammalian cells	24

Structural insights into the inactivation of the type I-F CRISPR-Cas system by anti-CRISPR proteins	23
A Gypsy element contributes to the nuclear retention and transcriptional regulation of the resident lncRNA in locusts	23
F/YGG-motif is an intrinsically disordered nucleic-acid binding motif	23
Trafficking and/or division: Distinct roles of nucleoporins based on their location within the nuclear pore complex	21
“Derailing the host machinery to achieve replication: how Viroid and Viroid-like RNAs successfully copy their genomes in hostile territory”	21
An optimized workflow of full-length transcriptome sequencing for accurate fusion transcript identification	20
Small molecule inhibition of RNA binding proteins in haematologic cancer	20
Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics	20
Mistranslating the genetic code with leucine in yeast and mammalian cells	20
Biology and utilization of R2 retrotransposons	20
Using sno- lncRNAs as potential markers for Prader-Willi syndrome diagnosis	19
Tissue-specific silencing of integrated transgenes achieved through endogenous RNA interference in Caenorhabditis elegans	19
A novel role for nucleolin in splice site selection	19
Correction	19
Early posttranscriptional response to tetracycline exposure in a gram-negative soil bacterium reveals unexpected attenuation mechanism of a DUF1127 gene	18
Prior metabolite extraction fully preserves RNAseq quality and enables integrative multi-‘omics analysis of the liver metabolic response to viral infection	18
Single-cell analysis of the epitranscriptome: RNA modifications under the microscope	18
The Importance of Being RNA-est: considering RNA-mediated ribosome plasticity	18
The RBS1 domain of Gemin5 is intrinsically unstructured and interacts with RNA through conserved Arg and aromatic residues	18
Expanding the immune-related targetome of miR-155-5p by integrating time-resolved RNA patterns into miRNA target prediction	18
MiR-2b-2-5p regulates lipid metabolism and reproduction by targeting CREB in Bactrocera dorsalis	17
Chimeric oligonucleotides combining guide RNA and single-stranded DNA repair template effectively induce precision gene editing	17
piRNAQuest V.2: an updated resource for searching through the piRNAome of multiple species	17
Molecular basis of backsplicing regulation and its application to manipulate circRNA levels	17
Comparative analysis of circular RNA enrichment methods	16
Structural maturation of the HIV-1 RNA 5’ untranslated region by Pr55 Gag and its maturation products	16
Global and single-nucleotide resolution detection of 7-methylguanosine in RNA	16
Characterization of CoCas9 nuclease from Capnocytophaga ochracea	16
Production of human translation-competent lysates using dual centrifugation	16
Circular at the very beginning: on the initial genomes in the RNA world	16
Circulating small RNA signatures differentiate accurately the subtypes of muscular dystrophies: small-RNA next-generation sequencing analytics and functional insights	16
Systematic analysis of A-to-I RNA editing upon release of ADAR from the nucleolus	15
A special issue dedicated to the memory of Jonathan R. Warner (1936-2019), a pioneer of ribosome biology	15
Unraveling C-to-U RNA editing events from direct RNA sequencing	15
High-throughput mapping of RNA solvent accessibility at the single-nucleotide resolution by RtcB ligation between a fixed 5′-OH-end linker and unique 3′-P-end fragments from hydroxyl radical cleavage	15
A comparative survey of the influence of small self-cleaving ribozymes on gene expression in human cell culture	15
Post-transcriptional regulation of BIRC5/survivin expression and induction of apoptosis in breast cancer cells by tristetraprolin	15
LncRNA HOTAIR promotes aerobic glycolysis by recruiting Lin28 to induce inflammation and apoptosis in acute lung injury	14
Psychrophilic phage VSW-3 RNA polymerase reduces both terminal and full-length dsRNA byproducts in in vitro transcription	14
Translational impacts of enzymes that modify ribosomal RNA around the peptidyl transferase centre	14
The oncogenic microRNA miR-222 promotes human LINE-1 retrotransposition	14
A positive feedback loop between LINC01605 and NF-κB pathway promotes tumor growth in nasopharyngeal carcinoma	14
Abasic RNA: its formation and potential role in cellular stress response	14
Enhanced binding of guanylated poly(A) RNA by the LaM domain of LARP1	14
Multiple Oligo assisted RNA Pulldown via Hybridization followed by Mass Spectrometry (MORPH-MS) for exploring the RNA-Protein interactions	14
Unique features of the m6A methylome and its response to drought stress in sea buckthorn (Hippophae rhamnoidesLinn.)	14
Truncating the spliceosomal ‘rope protein’ Prp45 results in Htz1 dependent phenotypes	13
Maturation of 23S rRNA includes removal of helix H1 in many bacteria	13
RNA structure-altering mutations underlying positive selection on Spike protein reveal novel putative signatures to trace crossing host-species barriers in Betacoronavirus	13
The role of the 5’ sensing function of ribonuclease E in cyanobacteria	13

LncRNAs in melanoma phenotypic plasticity: emerging targets for promising therapies	13
Rapid and scalable detection of synthetic mRNA byproducts using polynucleotide phosphorylase and polythymidine oligonucleotides	13
LncRNA CASC21 induces HGH1 to mediate colorectal cancer cell proliferation, migration, EMT and stemness	13
Cleavage sequence specificity of Nsp15	12
Integrated multi-omics reveals common properties underlying stress granule and P-body formation	12
EIciRNAs in focus: current understanding and future perspectives	12
Interactors and effects of overexpressing YlxR/RnpM, a conserved RNA binding protein in cyanobacteria	12
Epitranscriptomic signatures in stem cell differentiation to the neuronal lineage	12
Profile of tRNA-derived short non-coding RNAs during monocyte differentiation and their role in macrophage survival	11
An elusive debate on the evidence for RNA editing in SARS-CoV-2	11
Structural and computational studies of HIV-1 RNA	11
Innovative developments and emerging technologies in RNA therapeutics	11
Role of circular RNAs in DNA repair	11
Why are G-quadruplexes good at preventing protein aggregation?	11
MiRNAs differentially expressed in vegetative and reproductive organs of Marchantia polymorpha – insights into their expression pattern, gene structures and function	10
Exploring RNA modifications in infectious non-coding circular RNAs	10
Export of RNA-derived modified nucleosides by equilibrative nucleoside transporters defines the magnitude of autophagy response and Zika virus replication	10
Early recruitment of PARP-dependent m 8 A RNA methylation at DNA lesions is subsequently accompanied by active DNA demethylation	10
Structural analysis of temperature-dependent alternative splicing of HsfA2 pre-mRNA from tomato plants	10
The effect of crRNA–target mismatches on cOA-mediated interference by a type III-A CRISPR-Cas system	10
Characterization of the binding features between SARS-CoV-2 5’-proximal transcripts of genomic RNA and nucleocapsid proteins	10
Silencing LINC00663 inhibits inflammation and angiogenesis through downregulation of NR2F1 via EBF1 in bladder cancer	10
Novel non-coding FOXP3 transcript isoform associated to potential transcriptional interference in human regulatory T cells	10
hnRNPH1-MTR4 complex-mediated regulation of NEAT1v2 stability is critical for IL8 expression	10
Role of RNA polymerase III transcription and regulation in ischaemic stroke	9
RR3DD: an RNA global structure-based RNA three-dimensional structural classification database	9
Distinct small non-coding RNA landscape in the axons and released extracellular vesicles of developing primary cortical neurons and the axoplasm of adult nerves	9
Epitranscriptomic regulation in fasting hearts: implications for cardiac health	9
Identification and characterization of new structured RNA classes in plants	9
The landscape of alternative polyadenylation during EMT and its regulation by the RNA-binding protein Quaking	9
m6A modification of RNA in cervical cancer: role and clinical perspectives	9
The role and function of lncRNA in ageing-associated liver diseases	9
Cellular miR-150-5p may have a crucial role to play in the biology of SARS-CoV-2 infection by regulating nsp10 gene	9
sRNARFTarget: a fast machine-learning-based approach for transcriptome-wide sRNA target prediction	9
Sensitive and accurate analysis of gene expression signatures enabled by oligonucleotide-labelled cDNA	9
Estrogen receptor alpha (ERα) regulates PARN-mediated nuclear deadenylation and gene expression in breast cancer cells	9
Comprehensive analysis of prognosis-related alternative splicing events in ovarian cancer	8
Investigating the role of RNA structures in transcriptional pausing using in vitro assays and in silico analyses	8
Synergistic interaction network between the snR30 RNP, Utp23, and ribosomal RNA during ribosome synthesis	8
Representation of non-coding RNA-mediated regulation of gene expression using the Gene Ontology	8
mRNAs sequestered in stress granules recover nearly completely for translation	8
MicroRNA mimics can distort physiological microRNA effects on immune checkpoints by triggering an antiviral interferon response	8
Mechanisms of non-coding RNA-modulated alternative splicing in cancer	8
Small regulatory RNAs: from bench to bedside – a keystone symposia meeting report	8
A scalable system for the fast production of RNA with homogeneous terminal ends	8
cyPhyRNA-seq: a genome-scale RNA-seq method to detect active self-cleaving ribozymes by capturing RNAs with 2ʹ,3ʹ cyclic phosphates and 5ʹ hydroxyl ends	8
Sexually dimorphic microRNA miR-190 regulates lifespan in male Drosophila	8
Noncoding function of super enhancer derived Cpox pre-mRNA in modulating neighbouring gene expression and chromatin interactions	8
Two complementing in vivo selection systems based on CCA-trimming exonucleases as a tool to monitor, select and evaluate enzymatic features of tRNA nucleotidyltransferas	8
Coleopteran-specific StaufenC functions like Drosophila melanogaster Loquacious-PD in dsRNA processing	8
Transcriptional landscape of small non-coding RNAs reveals diversity of categories and functions in molluscs	8
Large-scale transcriptome-wide profiling of microRNAs in human placenta and maternal plasma at early to mid gestation	8
Germ granule-mediated mRNA storage and translational control	8
ncRNAs and polyphenols: new therapeutic strategies for hypertension	8
PRKCE non-coding variants influence on transcription as well as translation of its gene	8
tRNA modifications: greasing the wheels of translation and beyond	7
Role of RNA binding proteins of the Drosophila behavior and human splicing (DBHS) family in health and cancer	7
A high-throughput search for intracellular factors that affect RNA folding identifies E. coli proteins PepA and YagL as RNA chaperones that promote RNA remodelling	7
Regulation of magnesium ion transport in Escherichia coli : insights into the role of the 5’ upstream region in corA expression	7
mRNA vaccine designs for optimal adjuvanticity and delivery	7
Circular RNA Circ_0002762 promotes cell migration and invasion in cervical squamous cell carcinoma via activating RelA/nuclear factor kappa B (Nf-kB) signalling pathway	7
Dual synthesis pathways of scaRNA28 via intronic processing of transformation/transcription domain-associated protein transcripts and a novel independent transcription unit	7
Fusion transcripts landscape in hepatocellular carcinoma and potential impact on the expression of fusion partners	7
Correction	7
Two Piwis with Ago-like functions silence somatic genes at the chromatin level	7
RNA-dependent proteome solubility maintenance in Escherichia coli lysates analysed by quantitative mass spectrometry: Proteomic characterization in terms of isoelectric	7
Evolution of complexity in non-viral oligonucleotide delivery systems: from gymnotic delivery through bioconjugates to biomimetic nanoparticles	7
CCAR-1 works together with the U2AF large subunit UAF-1 to regulate alternative splicing	6
Nucleic acid strand displacement – from DNA nanotechnology to translational regulation	6
Differential translation elongation directs protein synthesis in response to acute glucose deprivation in yeast	6
Plant ribosomes as a score to fathom the melody of 2’- O -methylation across evolution	6
Small molecule inhibitor of Igf2bp1 represses Kras and a pro-oncogenic phenotype in cancer cells	6
Investigating the correlation between Xrn1-resistant RNAs and frameshifter pseudoknots	6
RNA folding and functions of RNA helicases in ribosome biogenesis	6
Alu RNA and their roles in human disease states	6
Serine-arginine splicing factor 2 promotes oesophageal cancer progression by regulating alternative splicing of interferon regulatory factor 3	6
RNA-containing extracellular vesicles in infection	6
Snhg12 targets miR-199a-5p to regulate osteogenic differentiation of TDSCs via the Fzd4/Wnt/β-catenin pathway	6
STAT3-induced ZBED3-AS1 promotes the malignant phenotypes of melanoma cells by activating PI3K/AKT signaling pathway	6
The androgen receptor messenger RNA: what do we know?	6

TBP facilitates RNA Polymerase I transcription following mitosis	6
Alternative cleavage and polyadenylation: key regulatory mechanisms in health and disease	6
Both host and parasite non-coding RNAs co-ordinate the regulation of macrophage gene expression to reduce pro-inflammatory immune responses and promote tissue repair pathways during infection with	6
Analysis of somatic piRNAs in the malaria mosquito Anopheles coluzzii reveals atypical classes of genic small RNAs	6
MustSeq, an alternative approach for multiplexible strand-specific 3’ end sequencing of mRNA transcriptome confers high efficiency and practicality	6
C-terminal tagging impairs AGO2 function	6
L1CAM immunocapture generates a unique extracellular vesicle population with a reproducible miRNA fingerprint	6
Anticodon sequence determines the impact of mistranslating tRNA Ala variants	6
Flexible pri-miRNA structures enable tunable production of 5’ isomiRs	6
Alternative splicing and MicroRNA: epigenetic mystique in male reproduction	5
Cross-kingdom small RNA communication between plants and fungal phytopathogens-recent updates and prospects for future agriculture	5
Pre-mRNA splicing-associated diseases and therapies	5
Identification and functional characterization of lncRNAs involved in human monocyte-to-macrophage differentiation	5
Inactivation of the riboswitch-controlled GMP synthase GuaA in Clostridioides difficile is associated with severe growth defects and poor infectivity in a mouse model of infection	5
The sRNA NsiR4 fine-tunes arginine synthesis in the cyanobacterium Synechocystis sp. PCC 6803 by post-transcriptional regulation of PirA	5
Mature microRNA-binding protein QKI promotes microRNA-mediated gene silencing	5
Splice site proximity influences alternative exon definition	5
Identification of HnRNPC as a novel Tau exon 10 splicing factor using RNA antisense purification mass spectrometry	5
The dark side of the ribosome life cycle	5
Maintaining mitochondrial ribosome function: The role of ribosome rescue and recycling factors	5
Reproducible and efficient new method of RNA 3’-end labelling by CutA nucleotidyltransferase-mediated CC-tailing	5
Duplex formation between the template and the nascent strand in the transcription-regulating sequences is associated with the site of template switching in SARS – CoV-2	5
Maturation of small nucleolar RNAs: from production to function	5
DMD antisense oligonucleotide mediated exon skipping efficiency correlates with flanking intron retention time and target position within the exon	5
Evidence for selection on SARS-CoV-2 RNA translation revealed by the evolutionary dynamics of mutations in UTRs and CDSs	5
Translation elongation: measurements and applications	5
Novel synthetic 3’-untranslated regions for controlling transgene expression in transgenicAedes aegyptimosquitoes	5
Nm-Nano: a machine learning framework for transcriptome-wide single-molecule mapping of 2´-O-methylation (Nm) sites in nanopore direct RNA sequencing datasets	5
The nexus of long noncoding RNAs, splicing factors, alternative splicing and their modulations	5
LINC00857 regulated by ZNF460 enhances the expression of CLDN12 by sponging miR-150-5p and recruiting SRSF1 for alternative splicing to promote epithelial-mesenchymal transformation of pancreatic aden	5
FRMC: a fast and robust method for the imputation of scRNA-seq data	5
Identifying candidate structured RNAs in CRISPR operons	5
Retrotransposon life cycle and its impacts on cellular responses	5
The role of OncoSnoRNAs and Ribosomal RNA 2’-O-methylation in Cancer	5
RNA polymerase II is recruited to DNA double-strand breaks for dilncRNA transcription in Drosophila	5
A novel lncRNA derived from an ultraconserved region: lnc-uc.147, a potential biomarker in luminal A breast cancer	5
Custom long non-coding RNA capture enhances detection sensitivity in different human sample types	4
Mechanistic insights into non-coding Y RNA processing	4
Ordering events in a developing genetic code	4
Novel compounds that synergize with aminoglycoside G418 or eRF3 degraders for translational readthrough of nonsense mutant TP53 and PTEN	4
The LARP6 La module from Tetrabaena socialis reveals structural and functional differences from plant and animal LARP6 homologues	4
Carrot and stick: how RNase R contributes to function and destruction of the translation machinery	4
Mitochondrial RNA maturation	4
Structures and functions of short argonautes	4
Escherichia coli transcriptome assembly from a compendium of RNA-seq data sets	4
Inhibition of mitochondrial complex III or dihydroorotate dehydrogenase (DHODH) triggers formation of poly(A) + RNA foci adjacent to nuclear speckles following activ	4
Conditional depletion of transcriptional kinases Ctk1 and Bur1 and effects on co-transcriptional spliceosome assembly and pre-mRNA splicing	4
Identification of differentially expressed non-coding RNAs in the plasma of women with preterm birth	4
Alternative splicing of the Snap23 microexon is regulated by MBNL, QKI, and RBFOX2 in a tissue-specific manner and is altered in striated muscle diseases	4
Temperature-sensing riboceptors	4
Three alternative splicing variants of Loquacious play different roles in miRNA- and siRNA-mediated RNAi pathways in Locusta migratoria	4
Poly(G) 7 box: a functional element of mammalian 18S rRNA involved in translation	4
Optimized chemical labeling method for isolation of 8-oxoG-modified RNA, ChLoRox-Seq, identifies mRNAs enriched in oxidation and transcriptome-wide distribution biases of oxidation events post environ	4
An introduction to PIWI-interacting RNAs (piRNAs) in the context of metazoan small RNA silencing pathways	4
RNA, the epicenter of genetic information RNA, the epicenter of genetic information , wirtten by John Mattick and Paulo Amaral, CRC Press, Boca Raton, 2022	4