RNA Biology

Article	Citations
lncRNAs: key player in Aβ deposition	82
Shortened CRISPR-Cas9 arrays enable multiplexed gene targeting in bacteria from a smaller DNA footprint	48
Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genes	47
The secret life of RNA and lipids	46
Identification of deleterious non-synonymous single nucleotide polymorphisms in the mRNA decay activator ZFP36L2	45
Architectures and complex functions of tandem riboswitches	45
A translational repression reporter assay for the analysis of RNA-binding protein consensus sites	41
Endonucleolytic processing plays a critical role in the maturation of ribosomal RNA in Methanococcus maripaludis	41
PacBio full-length transcriptome analysis provides new insights into transcription of chloroplast genomes	37
RNA therapeutics	36
BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification	36
RNA polymerase I mutant affects ribosomal RNA processing and ribosomal DNA stability	30
miR-181a-5p: a key regulator of placental function in health and disease	30
Synthetic RNA biology	30
The mycobacterial selenocysteine machinery: presence and expression	30
Derailing the host machinery to achieve replication: how viroid and viroid-like RNAs successfully copy their genomes in hostile territory	28
Defining the methanogenic SECIS element in vivo by targeted mutagenesis	26
Wide-spectrum profiling of plasma cell-free RNA and the potential for health-monitoring	26
Alpha-like subunits of multisubunit RNA polymerases: insights into structure, function, and disease	25
Serum-MiR-CanPred: deep learning framework for pan-cancer classification and miRNA-targeted drug discovery	24
Assessment of different enrichment methods revealed the optimal approach to identify bovine circRnas	24
Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics	23
Synthetic biology tools to promote the folding and function of RNA aptamers in mammalian cells	23
Discovery of a mutation-containing circRNA in polyglutamine disease through systematic analysis of RNAs with CAG repeats	23
An optimized workflow of full-length transcriptome sequencing for accurate fusion transcript identification	22

Small molecule inhibition of RNA binding proteins in haematologic cancer	22
Using sno- lncRNAs as potential markers for Prader-Willi syndrome diagnosis	22
Biology and utilization of R2 retrotransposons	22
Early posttranscriptional response to tetracycline exposure in a gram-negative soil bacterium reveals unexpected attenuation mechanism of a DUF1127 gene	21
Prior metabolite extraction fully preserves RNAseq quality and enables integrative multi-‘omics analysis of the liver metabolic response to viral infection	21
E2-regulated transcriptome complexity revealed by long-read direct RNA sequencing: from isoform discovery to truncated proteins	21
Mistranslating the genetic code with leucine in yeast and mammalian cells	21
Single-cell analysis of the epitranscriptome: RNA modifications under the microscope	20
The Importance of Being RNA-est: considering RNA-mediated ribosome plasticity	20
Correction	19
Decoding RNA–protein interactions using high-throughput methods	19
Tissue-specific silencing of integrated transgenes achieved through endogenous RNA interference in Caenorhabditis elegans	19
Expanding the immune-related targetome of miR-155-5p by integrating time-resolved RNA patterns into miRNA target prediction	19
Global and single-nucleotide resolution detection of 7-methylguanosine in RNA	18
High-throughput mapping of RNA solvent accessibility at the single-nucleotide resolution by RtcB ligation between a fixed 5′-OH-end linker and unique 3′-P-end fragments from hydroxyl radical cleavage	18
Molecular basis of backsplicing regulation and its application to manipulate circRNA levels	18
MiR-2b-2-5p regulates lipid metabolism and reproduction by targeting CREB in Bactrocera dorsalis	18
LncRNA HOTAIR promotes aerobic glycolysis by recruiting Lin28 to induce inflammation and apoptosis in acute lung injury	17
Bevacizumab induces apoptosis in glioblastoma cells by upregulating miR-4695-5p to inhibit PKMYT1	17
Conversations at the crossroads of the Human RNome Project: a collaborative reflection by the RNome Early Career Researchers	17
Systematic analysis of A-to-I RNA editing upon release of ADAR from the nucleolus	16
Abasic RNA: its formation and potential role in cellular stress response	15
FDA-approved antisense oligonucleotide therapies for duchenne muscular dystrophy: current status and future outlook	15
The oncogenic microRNA miR-222 promotes human LINE-1 retrotransposition	15
Enhanced binding of guanylated poly(A) RNA by the LaM domain of LARP1	15
Characterization of CoCas9 nuclease from Capnocytophaga ochracea	15
A special issue dedicated to the memory of Jonathan R. Warner (1936-2019), a pioneer of ribosome biology	15
A comparative survey of the influence of small self-cleaving ribozymes on gene expression in human cell culture	14
Post-transcriptional regulation of BIRC5/survivin expression and induction of apoptosis in breast cancer cells by tristetraprolin	14
Circular at the very beginning: on the initial genomes in the RNA world	14
Psychrophilic phage VSW-3 RNA polymerase reduces both terminal and full-length dsRNA byproducts in in vitro transcription	14
Unraveling C-to-U RNA editing events from direct RNA sequencing	14
Profile of tRNA-derived short non-coding RNAs during monocyte differentiation and their role in macrophage survival	14
Translational impacts of enzymes that modify ribosomal RNA around the peptidyl transferase centre	14
Multiple Oligo assisted RNA Pulldown via Hybridization followed by Mass Spectrometry (MORPH-MS) for exploring the RNA-Protein interactions	14
The role of the 5’ sensing function of ribonuclease E in cyanobacteria	13
EIciRNAs in focus: current understanding and future perspectives	13
Change of guards: ELAVL proteins switch miRNA export responsibility to regulate differentiation of PC12 cells	13
RNA polymerase II phosphorylation dynamics: from molecular mechanisms to human disease	13
Truncating the spliceosomal ‘rope protein’ Prp45 results in Htz1 dependent phenotypes	13
Why are G-quadruplexes good at preventing protein aggregation?	13
Nusinersen: the antisense oligonucleotide at the forefront of spinal muscular atrophy treatment	13
LncRNAs in melanoma phenotypic plasticity: emerging targets for promising therapies	12
Cleavage sequence specificity of Nsp15	12
Early recruitment of PARP-dependent m 8 A RNA methylation at DNA lesions is subsequently accompanied by active DNA demethylation	12
Interactors and effects of overexpressing YlxR/RnpM, a conserved RNA binding protein in cyanobacteria	12
RNA structure-altering mutations underlying positive selection on Spike protein reveal novel putative signatures to trace crossing host-species barriers in Betacoronavirus	12
Exploring RNA modifications in infectious non-coding circular RNAs	12
Rapid and scalable detection of synthetic mRNA byproducts using polynucleotide phosphorylase and polythymidine oligonucleotides	12
Characterization of the binding features between SARS-CoV-2 5’-proximal transcripts of genomic RNA and nucleocapsid proteins	12

MicroRNA-mediated regulation of proliferation, lineage differentiation, and apoptosis in neural stem cells	11
An elusive debate on the evidence for RNA editing in SARS-CoV-2	11
The effect of crRNA–target mismatches on cOA-mediated interference by a type III-A CRISPR-Cas system	11
Structural and computational studies of HIV-1 RNA	11
Novel non-coding FOXP3 transcript isoform associated to potential transcriptional interference in human regulatory T cells	11
Silencing LINC00663 inhibits inflammation and angiogenesis through downregulation of NR2F1 via EBF1 in bladder cancer	11
MiRNAs differentially expressed in vegetative and reproductive organs of Marchantia polymorpha – insights into their expression pattern, gene structures	11
Impact of interspecies colostrum and milk replacement on circulating sncRNA dynamics of neonatal goat kids	10
RNA binding of GAPDH controls transcript stability and protein translation in acute myeloid leukemia	10
Identification and characterization of new structured RNA classes in plants	10
Role of circular RNAs in DNA repair	10
The role and function of lncRNA in ageing-associated liver diseases	10
The landscape of alternative polyadenylation during EMT and its regulation by the RNA-binding protein Quaking	9
Altering rRNA 2’O-methylation pattern during neuronal differentiation is regulated by FMRP	9
Two complementing in vivo selection systems based on CCA-trimming exonucleases as a tool to monitor, select and evaluate enzymatic features of tRNA nucle	9
Role of RNA polymerase III transcription and regulation in ischaemic stroke	9
m6A modification of RNA in cervical cancer: role and clinical perspectives	9
Transcriptional landscape of small non-coding RNAs reveals diversity of categories and functions in molluscs	9
Noncoding function of super enhancer derived Cpox pre-mRNA in modulating neighbouring gene expression and chromatin interactions	9
Reading the SINEs – functionality in noncoding RNA ‘cheap genes’	9
Estrogen receptor alpha (ERα) regulates PARN-mediated nuclear deadenylation and gene expression in breast cancer cells	9
Epitranscriptomic regulation in fasting hearts: implications for cardiac health	9
Representation of non-coding RNA-mediated regulation of gene expression using the Gene Ontology	9
Sexually dimorphic microRNA miR-190 regulates lifespan in male Drosophila	9
A scalable system for the fast production of RNA with homogeneous terminal ends	9
Abundant A-to-I RNA editing in spermatocytes may suppress transposons to compensate for piRNA downregulation in male germlines	8
Essential role of hsa-miR-203a-3p in type I interferons immune homeostasis during influenza and NDV infection	8
tRNA modifications: greasing the wheels of translation and beyond	8
A transformer-based method for the cap analysis of gene expression and gene expression tag associated capping region prediction in RNA	8
PRKCE non-coding variants influence on transcription as well as translation of its gene	8
Long non-coding RNA transcripts in crucian carp brain – annotation and expression patterns in anoxia and reoxygenation	8
Dynamic shifts in isomiR profiles during parasite maturation of Fasciola hepatica	8
Correction	8
MicroRNA mimics can distort physiological microRNA effects on immune checkpoints by triggering an antiviral interferon response	8
Germ granule-mediated mRNA storage and translational control	8
The RNA exosome: mechanisms of RNA surveillance, regulation, and disease	8
Small regulatory RNAs: from bench to bedside – a keystone symposia meeting report	8
Comprehensive analysis of prognosis-related alternative splicing events in ovarian cancer	8
Dual synthesis pathways of scaRNA28 via intronic processing of transformation/transcription domain-associated protein transcripts and a novel independent transcription unit	7
A high-throughput search for intracellular factors that affect RNA folding identifies E. coli proteins PepA and YagL as RNA chaperones that promote RNA r	7
L1CAM immunocapture generates a unique extracellular vesicle population with a reproducible miRNA fingerprint	7
mRNA vaccine designs for optimal adjuvanticity and delivery	7
Evolution of complexity in non-viral oligonucleotide delivery systems: from gymnotic delivery through bioconjugates to biomimetic nanoparticles	7
Circular RNA Circ_0002762 promotes cell migration and invasion in cervical squamous cell carcinoma via activating RelA/nuclear factor kappa B (Nf-kB) signalling pathway	7
RGG-motif protein Scd6 affects oxidative stress response by regulating cytosolic caTalase T1 (Ctt1)	7
Regulation of magnesium ion transport in Escherichia coli : insights into the role of the 5’ upstream region in corA	7
Role of RNA binding proteins of the Drosophila behavior and human splicing (DBHS) family in health and cancer	7
Investigating the correlation between Xrn1-resistant RNAs and frameshifter pseudoknots	6
RNA G-quadruplex-protein interactions: from nuclear RNA processing to cytoplasmic stress response and neurodegeneration	6
Role of small intronic RNAs in the crosstalk between immune cells and β-cells during type 1 diabetes development	6
Fusion transcripts landscape in hepatocellular carcinoma and potential impact on the expression of fusion partners	6
C-terminal tagging impairs AGO2 function	6
NSUN2 as an emerging epigenetic regulator in cancer: from biomarker to therapeutic target	6
Direct and indirect effects of spliceosome disruption compromise gene regulation by nonsense-mediated mRNA decay	6
The Mediator complex: co-transcriptional regulation and beyond	6
Anticodon sequence determines the impact of mistranslating tRNA Ala variants	6
Crosstalk between RNA secondary and three-dimensional structure prediction: a comprehensive study	6
Plant ribosomes as a score to fathom the melody of 2’- O -methylation across evolution	6
RNA-dependent proteome solubility maintenance in Escherichia coli lysates analysed by quantitative mass spectrometry: Proteomic characterization in terms	6
Snhg12 targets miR-199a-5p to regulate osteogenic differentiation of TDSCs via the Fzd4/Wnt/β-catenin pathway	6
Alternative cleavage and polyadenylation: key regulatory mechanisms in health and disease	5
Analysis of somatic piRNAs in the malaria mosquito Anopheles coluzzii reveals atypical classes of genic small RNAs	5
Mature microRNA-binding protein QKI promotes microRNA-mediated gene silencing	5
Nucleic acid strand displacement – from DNA nanotechnology to translational regulation	5
5PSeq Explorer: interactive analysis of co-translational mRNA decay and ribosome dynamics	5
DeepRNA-Reg: a deep-learning based approach for comparative analysis of CLIP experiments	5
RNA-containing extracellular vesicles in infection	5
Both host and parasite non-coding RNAs co-ordinate the regulation of macrophage gene expression to reduce pro-inflammatory immune responses and promote tissue repair pathways during infection with	5
Serine-arginine splicing factor 2 promotes oesophageal cancer progression by regulating alternative splicing of interferon regulatory factor 3	5
Translation elongation: measurements and applications	5
Maturation of small nucleolar RNAs: from production to function	5
Identification and functional characterization of lncRNAs involved in human monocyte-to-macrophage differentiation	5
CCAR-1 works together with the U2AF large subunit UAF-1 to regulate alternative splicing	5
TBP facilitates RNA Polymerase I transcription following mitosis	5
The mRNA architecture of the translation termination site primes programmed stop codon readthrough events in Drosophila	5
DMD antisense oligonucleotide mediated exon skipping efficiency correlates with flanking intron retention time and target position within the exon	5
Retrotransposon life cycle and its impacts on cellular responses	5
The dark side of the ribosome life cycle	5
TWO DIPEPTIDE REPEAT PROTEINS ARE PRODUCED FROM MAMMALIAN TELOMERIC RNA PREVIOUSLY THOUGHT TO BE a LONG NON-CODING RNA	5
The LARP6 La module from Tetrabaena socialis reveals structural and functional differences from plant and animal LARP6 homologues	4

Systematic mapping of small nucleolar RNA interactions in human cells	4
Structures and functions of short argonautes	4
EIF4A3-induced circFAT1 promotes high glucose-induced podocyte damage via miR-30e-5p/SOX4 axis	4
Pre-mRNA splicing-associated diseases and therapies	4
Enhanced cleavage of genomic CCR5 using CasX2 Max	4
Circular RNA Pde4dip regulates myogenesis by interacting with Zfp143 mRNA: a novel regulatory axis	4
Escherichia coli transcriptome assembly from a compendium of RNA-seq data sets	4
Three alternative splicing variants of Loquacious play different roles in miRNA- and siRNA-mediated RNAi pathways in Locusta migra	4
Diverse RNAs in human umbilical cord-derived exosomes and their therapeutic potential	4
Temperature-sensing riboceptors	4
The nexus of long noncoding RNAs, splicing factors, alternative splicing and their modulations	4
Nm-Nano: a machine learning framework for transcriptome-wide single-molecule mapping of 2´-O-methylation (Nm) sites in nanopore direct RNA sequencing datasets	4
Alternative splicing of the Snap23 microexon is regulated by MBNL, QKI, and RBFOX2 in a tissue-specific manner and is altered in striated muscle diseases	4
FTO-mediated m 6 A demethylation of BCL6 promotes gastric cancer progression by suppressing ferroptosis	4
The RNA-binding activity of the Drosophila Brat protein is necessary for viability and mRNA regulation	4
Mitochondrial RNA maturation	4
Carrot and stick: how RNase R contributes to function and destruction of the translation machinery	4
RNA, the epicenter of genetic information RNA, the epicenter of genetic information , wirtten by John Mattick and Paulo Amaral, CRC Press, Boca Raton, 2022	4
Cross-kingdom small RNA communication between plants and fungal phytopathogens-recent updates and prospects for future agriculture	4
Rna analysis of the regulation of expression and alternative splicing in polycystic ovarian syndrome	4
Structure-driven function of plant lncRNAs: conserved RNA architectures in transcriptional and post-transcriptional regulation	4
The RNA binding protein ZFP36L2 displays tissue-selective mRNA targeting in mice	4
Novel compounds that synergize with aminoglycoside G418 or eRF3 degraders for translational readthrough of nonsense mutant TP53 and <	3
Evaluating Malat1 -derived 3’end sequences for functional transgene expression in human cells using synthetic mRNA delivery	3
An orthology-based methodology as a complementary approach to retrieve evolutionarily conserved A-to-I RNA editing sites	3
Optimized chemical labeling method for isolation of 8-oxoG-modified RNA, ChLoRox-Seq, identifies mRNAs enriched in oxidation and transcriptome-wide distribution biases of oxidation events post environ	3
Identification of proteins interacting with the N-terminal half of endoribonuclease RNase E in Escherichia coli	3
The catalytic activity of methyltransferase METTL15 is dispensable for its role in mitochondrial ribosome biogenesis	3
A novel strategy for orthogonal genetic regulation on different RNA targeted loci simultaneously	3
RNA modification-mediated translational control in immune cells	3
Extracellular RNA in oncogenesis, metastasis and drug resistance	3
Identification of differentially expressed non-coding RNAs in the plasma of women with preterm birth	3
An introduction to PIWI-interacting RNAs (piRNAs) in the context of metazoan small RNA silencing pathways	3
Optimizing protocols for microRNA profiling of infant and toddler stool	3
Ordering events in a developing genetic code	3
The continuing discovery on the evidence for RNA editing in SARS-CoV-2	3
In silico unwinding of Caenorhabditis elegans microRNA duplexes to evaluate thermodynamic end stabilities improves predictions of microRNA strand selecti	3
AI foundation models for RNA biology	3
The impact of RNA binding proteins and the associated long non-coding RNAs in the TCA cycle on cancer pathogenesis	3
Shared and organ-specific gene-expression programs during the development of the cochlea and the superior olivary complex	3
Origin of ribonucleotide recognition motifs through ligand mimicry at early earth	3
Multipurpose RNA maturation factors dysregulate multiple mRNA processing steps simultaneously and provide new therapeutic opportunities	3
Poly(G) 7 box: a functional element of mammalian 18S rRNA involved in translation	3
Inhibition of mitochondrial complex III or dihydroorotate dehydrogenase (DHODH) triggers formation of poly(A) + RNA foci adjacent to nuclear speckles following activ	3
Therapeutic potential of natural antisense transcripts and various mechanisms involved for clinical applications and disease prevention	3
Emerging roles of long non-coding RNAs in osteoarthritis: from molecular mechanisms to therapeutic opportunities	3
Research progress of circRNA in malignant tumour metabolic reprogramming	3
Extracellular vesicle-derived MicroRNAs as potential therapies for spinal cord and peripheral nerve injuries	3
Hybrid-seq deciphers the complex transcriptional profile of the human BRCA1 DNA repair associated gene	3
Impact of Gemin5 in protein synthesis: phosphoresidues of the dimerization domain regulate ribosome binding	3
Circular RNAs in non-alcoholic fatty liver disease: Functions and clinical significance	3