RNA Biology

Article	Citations
Translational impacts of enzymes that modify ribosomal RNA around the peptidyl transferase centre	89
Origin & influence of autocatalytic reaction networks at the advent of the RNA world	54
Post-transcriptional regulation of BIRC5/survivin expression and induction of apoptosis in breast cancer cells by tristetraprolin	50
Ordering events in a developing genetic code	48
Conditional depletion of transcriptional kinases Ctk1 and Bur1 and effects on co-transcriptional spliceosome assembly and pre-mRNA splicing	46
The androgen receptor messenger RNA: what do we know?	45
Interplays of different types of epitranscriptomic mRNA modifications	42
An overview of RNA splicing and functioning of splicing factors in land plant chloroplasts	41
A special issue dedicated to the memory of Jonathan R. Warner (1936-2019), a pioneer of ribosome biology	39
A positive feedback loop between LINC01605 and NF-κB pathway promotes tumor growth in nasopharyngeal carcinoma	33
Psychrophilic phage VSW-3 RNA polymerase reduces both terminal and full-length dsRNA byproducts in in vitro transcription	32
Circulating small RNA signatures differentiate accurately the subtypes of muscular dystrophies: small-RNA next-generation sequencing analytics and functional insights	32
Bisulphite miRNA-seq reveals widespread CpG and non-CpG 5-(hydroxy)methyl-Cytosine in human microRNAs	32
Characterization of CoCas9 nuclease from Capnocytophaga ochracea	31
Inhibition of mitochondrial complex III or dihydroorotate dehydrogenase (DHODH) triggers formation of poly(A) + RNA foci adjacent to nuclear speckles following activ	30
Global profiling and annotation of templated isomiRs dynamics across Caenorhabditis elegans development	30
Role of RNA binding proteins of the Drosophila behavior and human splicing (DBHS) family in health and cancer	30
Poly(G) 7 box: a functional element of mammalian 18S rRNA involved in translation	29
Comparative analysis of piRNA sequences, targets and functions in nematodes	28
Shortened CRISPR-Cas9 arrays enable multiplexed gene targeting in bacteria from a smaller DNA footprint	26
Abasic RNA: its formation and potential role in cellular stress response	26
Multiple Oligo assisted RNA Pulldown via Hybridization followed by Mass Spectrometry (MORPH-MS) for exploring the RNA-Protein interactions	26
Circular at the very beginning: on the initial genomes in the RNA world	25
Two Piwis with Ago-like functions silence somatic genes at the chromatin level	23
Identification and characterization of novel infection associated transcripts in macrophages	22

TTP-mediated regulation of mRNA stability in immune cells contributes to adaptive immunity, immune tolerance and clinical applications	22
Translational control of murine adiponectin expression by an upstream open reading frame element	22
Structural maturation of the HIV-1 RNA 5’ untranslated region by Pr55 Gag and its maturation products	22
MRM-BERT: a novel deep neural network predictor of multiple RNA modifications by fusing BERT representation and sequence features	21
The distinct RNA-interaction modes of a small ZnF domain underlay TUT4(7) diverse action in miRNA regulation	21
An efficient, scarless, selection-free technology for phage engineering	21
Enhanced binding of guanylated poly(A) RNA by the LaM domain of LARP1	21
Annexin A2 binds the internal ribosomal entry site of c-myc mRNA and regulates its translation	20
Alternative splicing diversifies the transcriptome and proteome of the rice blast fungus during host infection	20
CNOT1 regulates circadian behaviour through Per2 mRNA decay in a deadenylation-dependent manner	19
Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genes	19
Nucleo-cytoplasmic RNA distribution responsible for maintaining neuroinflammatory microenvironment	18
RNA-dependent proteome solubility maintenance in Escherichia coli lysates analysed by quantitative mass spectrometry: Proteomic characterization in terms of isoelectric	18
Variance in translational fidelity of different bacterial species is affected by pseudouridines in the tRNA anticodon stem-loop	18
Unraveling C-to-U RNA editing events from direct RNA sequencing	17
Regulation of magnesium ion transport in Escherichia coli : insights into the role of the 5’ upstream region in corA expression	17
A small ribosome-associated ncRNA globally inhibits translation by restricting ribosome dynamics	17
Uridylation of the histone mRNA stem-loop weakens binding interactions with SLBP while maintaining interactions with 3’hExo	17
A high-throughput search for intracellular factors that affect RNA folding identifies E. coli proteins PepA and YagL as RNA chaperones that promote RNA remodelling	17
A comparative survey of the influence of small self-cleaving ribozymes on gene expression in human cell culture	17
Gld2 activity and RNA specificity is dynamically regulated by phosphorylation and interaction with QKI-7	17
High-throughput mapping of RNA solvent accessibility at the single-nucleotide resolution by RtcB ligation between a fixed 5′-OH-end linker and unique 3′-P-end fragments from hydroxyl radical cleavage	17
Novel compounds that synergize with aminoglycoside G418 or eRF3 degraders for translational readthrough of nonsense mutant TP53 and PTEN	16
WDR33 alternative polyadenylation is dependent on stochastic poly(a) site usage and splicing efficiencies	16
Tapping the potential of synthetic riboswitches: reviewing the versatility of the tetracycline aptamer	16
LncRNA HOTAIR promotes aerobic glycolysis by recruiting Lin28 to induce inflammation and apoptosis in acute lung injury	16
Optimized chemical labeling method for isolation of 8-oxoG-modified RNA, ChLoRox-Seq, identifies mRNAs enriched in oxidation and transcriptome-wide distribution biases of oxidation events post environ	16
L1CAM immunocapture generates a unique extracellular vesicle population with a reproducible miRNA fingerprint	16
Circular RNA Circ_0002762 promotes cell migration and invasion in cervical squamous cell carcinoma via activating RelA/nuclear factor kappa B (Nf-kB) signalling pathway	15
Evolution of complexity in non-viral oligonucleotide delivery systems: from gymnotic delivery through bioconjugates to biomimetic nanoparticles	15
An introduction to PIWI-interacting RNAs (piRNAs) in the context of metazoan small RNA silencing pathways	15
Unique features of the m6A methylome and its response to drought stress in sea buckthorn (Hippophae rhamnoidesLinn.)	14
Small molecule inhibitor of Igf2bp1 represses Kras and a pro-oncogenic phenotype in cancer cells	14
Thrombosis-related circulating miR-16-5p is associated with disease severity in patients hospitalised for COVID-19	14
Flexible pri-miRNA structures enable tunable production of 5’ isomiRs	14
Dynamic and static circulating cancer microRNA biomarkers – a validation study	14
Principles and correction of 5’-splice site selection	14
An orthology-based methodology as a complementary approach to retrieve evolutionarily conserved A-to-I RNA editing sites	13
Implications of LncRNAs and CircRNAs in psoriasis: a review	13
Identification of differentially expressed non-coding RNAs in the plasma of women with preterm birth	13
RNA folding and functions of RNA helicases in ribosome biogenesis	13
EIciRNAs in focus: current understanding and future perspectives	13
Selectivity of Exportin 5 binding to human precursor microRNAs	13
All genera of Flaviviridae host a conserved Xrn1-resistant RNA motif	13
RNase P cleavage of pseudoknot substrates reveals differences in active site architecture that depend on residue N-1 in the 5’ leader	13
If the 5’ cap fits (wear it) – Non-canonical RNA capping	13
Prokaryotic rRNA-mRNA interactions are involved in all translation steps and shape bacterial transcripts	13
Architectures and complex functions of tandem riboswitches	13
Mitochondrial noncoding RNAs: new wine in an old bottle	13
The multifaceted functions of the Fat mass and Obesity-associated protein (FTO) in normal and cancer cells	12

The continuing discovery on the evidence for RNA editing in SARS-CoV-2	12
Origin of ribonucleotide recognition motifs through ligand mimicry at early earth	12
STAT3-induced ZBED3-AS1 promotes the malignant phenotypes of melanoma cells by activating PI3K/AKT signaling pathway	12
Insights into the secondary and tertiary structure of the Bovine Viral Diarrhea Virus Internal Ribosome Entry Site	12
A novel experimental approach for the selective isolation and characterization of human RNase MRP	12
Plant ribosomes as a score to fathom the melody of 2’- O -methylation across evolution	12
RNA diagnostics and therapeutics: a comprehensive review	12
Poly C Binding Protein 2 dependent nuclear retention of the utrophin-A mRNA in C2C12 cells	12
Correction	12
Investigating the correlation between Xrn1-resistant RNAs and frameshifter pseudoknots	12
Extracellular RNA in oncogenesis, metastasis and drug resistance	11
RNA-based therapeutics for neurological diseases	11
Identification of deleterious non-synonymous single nucleotide polymorphisms in the mRNA decay activator ZFP36L2	11
The translation initiation factor EIF4E5 from Leishmania: crystal structure and interacting partners	11
Shared and organ-specific gene-expression programs during the development of the cochlea and the superior olivary complex	11
RNA polymerase I mutant affects ribosomal RNA processing and ribosomal DNA stability	11
Inefficient splicing of long non-coding RNAs is associated with higher transcript complexity in human and mouse	11
Special focus on the ribosome life cycle	11
Synthetic RNA biology	11
DARS-AS1 recruits METTL3/METTL14 to bind and enhance DARS mRNA m 6 A modification and translation for cytoprotective autophagy in cervical cancer	11
Coupling mechanisms coordinating mRNA translation with stages of the mRNA lifecycle	11
Specialised ribosomes as versatile regulators of gene expression	11
Truncating the spliceosomal ‘rope protein’ Prp45 results in Htz1 dependent phenotypes	11
CFIm25 regulates human stem cell function independently of its role in mRNA alternative polyadenylation	11
In silico and experimental approaches for validating RNA editing events in transcriptomes	11
The Dihydrouridine landscape from tRNA to mRNA: a perspective on synthesis, structural impact and function	11
LncRNA CASC21 induces HGH1 to mediate colorectal cancer cell proliferation, migration, EMT and stemness	11
Hybrid-seq deciphers the complex transcriptional profile of the human BRCA1 DNA repair associated gene	11
The role of the 5’ sensing function of ribonuclease E in cyanobacteria	11
Research progress of circRNA in malignant tumour metabolic reprogramming	11
RNA modification-mediated translational control in immune cells	11
The enigmatic RNase MRP of kinetoplastids	10
Regulation of CCR4-NOT complex deadenylase activity and cellular responses by MK2-dependent phosphorylation of CNOT2	10
Circular RNAs in non-alcoholic fatty liver disease: Functions and clinical significance	10
The catalytic activity of methyltransferase METTL15 is dispensable for its role in mitochondrial ribosome biogenesis	10
N6-methyladenosine RNA modification and its interaction with regulatory non-coding RNAs in colorectal cancer	10
A novel panel of blood-based microRNAs capable of discrimination between benign breast disease and breast cancer at early stages	10
Alu RNA and their roles in human disease states	10
Hfq protein and GcvB small RNA tailoring of oppA target mRNA to levels allowing translation activation by MicF small RNA in Escherichia coli	10
RNA modifications act as regulators of cell death	10
Sensing intracellular signatures with synthetic mRNAs	10
Therapeutic potential of natural antisense transcripts and various mechanisms involved for clinical applications and disease prevention	10
RNA therapeutics	10
Both host and parasite non-coding RNAs co-ordinate the regulation of macrophage gene expression to reduce pro-inflammatory immune responses and promote tissue repair pathways during infection with	9
The impact of RNA binding proteins and the associated long non-coding RNAs in the TCA cycle on cancer pathogenesis	9
Differential translation elongation directs protein synthesis in response to acute glucose deprivation in yeast	9
Diverse roles of biomolecular condensation in eukaryotic translational regulation	9
Maturation of 23S rRNA includes removal of helix H1 in many bacteria	9
Rapid and scalable detection of synthetic mRNA byproducts using polynucleotide phosphorylase and polythymidine oligonucleotides	9
PacBio full-length transcriptome analysis provides new insights into transcription of chloroplast genomes	9
FMRP cooperates with miRISC components to repress translation and regulate neurite morphogenesis in Drosophila	9
A novel strategy for orthogonal genetic regulation on different RNA targeted loci simultaneously	9
LncRNAs in melanoma phenotypic plasticity: emerging targets for promising therapies	9
Decoding LINC00052 role in breast cancer by bioinformatic and experimental analyses	9
Endonucleolytic processing plays a critical role in the maturation of ribosomal RNA in Methanococcus maripaludis	9
Epitranscriptomic signatures in stem cell differentiation to the neuronal lineage	8
A genetic variant alters the secondary structure of the lncRNA H19 and is associated with dilated cardiomyopathy	8
M6ADD: a comprehensive database of m6A modifications in diseases	8
Integrated multi-omics reveals common properties underlying stress granule and P-body formation	8
TBP facilitates RNA Polymerase I transcription following mitosis	8
RNA structure-altering mutations underlying positive selection on Spike protein reveal novel putative signatures to trace crossing host-species barriers in Betacoronavirus	8
SNHG15 aids SARS-CoV-2 entry via RABL2A	8
MustSeq, an alternative approach for multiplexible strand-specific 3’ end sequencing of mRNA transcriptome confers high efficiency and practicality	8
mRNA nuclear export: how mRNA identity features distinguish functional RNAs from junk transcripts	8
Alternative polyadenylated mRNAs behave as asynchronous rhythmic transcription in Arabidopsis	8
A translational repression reporter assay for the analysis of RNA-binding protein consensus sites	8
Anticodon sequence determines the impact of mistranslating tRNA Ala variants	8
Innovative developments and emerging technologies in RNA therapeutics	8
Significance of VLPs in Vlp-circRNA vaccines: a vaccine candidate or delivery vehicle?	7
Release and degradation of dissolved environmental RNAs from zebrafish cells	7
Endogenous ZAP affects Zika virus RNA interactome	7
Structure-aware machine learning identifies microRNAs operating as Toll-like receptor 7/8 ligands	7
Interactors and effects of overexpressing YlxR/RnpM, a conserved RNA binding protein in cyanobacteria	7
BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification	7
A DNA intercalating dye-based RT-qPCR alternative to diagnose SARS-CoV-2	7
HNRNPD regulates the biogenesis of circRNAs and the ratio of mRNAs to circRNAs for a set of genes	7
Why are G-quadruplexes good at preventing protein aggregation?	7
Early recruitment of PARP-dependent m 8 A RNA methylation at DNA lesions is subsequently accompanied by active DNA demethylation	7
Export of RNA-derived modified nucleosides by equilibrative nucleoside transporters defines the magnitude of autophagy response and Zika virus replication	7
miRSM: an R package to infer and analyse miRNA sponge modules in heterogeneous data	7

An elusive debate on the evidence for RNA editing in SARS-CoV-2	6
Hairpin sequence and structure is associated with features of isomiR biogenesis	6
The myriad roles of RNA structure in the flavivirus life cycle	6
In vivo discovery of RNA proximal proteins via proximity-dependent biotinylation	6
DMD antisense oligonucleotide mediated exon skipping efficiency correlates with flanking intron retention time and target position within the exon	6
Human nucleolar protein 7 (NOL7) is required for early pre-rRNA accumulation and pre-18S rRNA processing	6
F/YGG-motif is an intrinsically disordered nucleic-acid binding motif	6
Role of circular RNAs in DNA repair	6
Urea supplementation improves mRNA in vitro transcription by decreasing both shorter and longer RNA byproducts	6
A variant of guanidine-IV riboswitches exhibits evidence of a distinct ligand specificity	6
GlyinsRNA: a webserver for predicting glycosylation sites on small RNAs	6
Background splicing as a predictor of aberrant splicing in genetic disease	6
RNA-containing extracellular vesicles in infection	6
New substrates and determinants for tRNA recognition of RNA methyltransferase DNMT2/TRDMT1	6
Assessment of different enrichment methods revealed the optimal approach to identify bovine circRnas	6
MiRNAs differentially expressed in vegetative and reproductive organs of Marchantia polymorpha – insights into their expression pattern, gene structures and function	6
Spatiotemporal expression of long noncoding RNA Moshe modulates heart cell lineage commitment	6
Exosomes provide unappreciated carrier effects that assist transfers of their miRNAs to targeted cells; I. They are ‘The Elephant in the Room’	6
A Gypsy element contributes to the nuclear retention and transcriptional regulation of the resident lncRNA in locusts	5
The effect of crRNA–target mismatches on cOA-mediated interference by a type III-A CRISPR-Cas system	5
Optimization of a fluorescent-mRNA based real-time assay for precise kinetic measurements of ribosomal translocation	5
Serine-arginine splicing factor 2 promotes oesophageal cancer progression by regulating alternative splicing of interferon regulatory factor 3	5
Structural and functional insights into human tRNA guanine transglycosylase	5
RNA polymerase II is recruited to DNA double-strand breaks for dilncRNA transcription in Drosophila	5
Preferential translation of p53 target genes	5
Structural and computational studies of HIV-1 RNA	5
MicroRNA-140-3p alleviates intervertebral disc degeneration via KLF5/N-cadherin/MDM2/Slug axis	5
A mitochondrial cytidine deaminase is responsible for C to U editing of tRNATrp to decode the UGA codon in Trypanosoma brucei	5
Upon heat stress processing of ribosomal RNA precursors into mature rRNAs is compromised after cleavage at primary P site in Arabidopsis thalian a	5
Structural insights into the inactivation of the type I-F CRISPR-Cas system by anti-CRISPR proteins	5
Comparative study of bioinformatic tools for the identification of chimeric RNAs from RNA Sequencing	5
hnRNPH1-MTR4 complex-mediated regulation of NEAT1v2 stability is critical for IL8 expression	5
Genomically Hardwired Regulation of Gene Activity Orchestrates Cellular Iron Homeostasis in Arabidopsis	5
The role of dsRNA A-to-I editing catalyzed by ADAR family enzymes in the pathogeneses	5
European COST action CA16120 EPITRAN: the first four years and beyond	5
Structure and function of the pseudouridine 5’-monophosphate glycosylase PUMY from Arabidopsis thaliana	5
Comprehensive discovery of novel structured noncoding RNAs in 26 bacterial genomes	5
Bacterial RNA chaperones and chaperone-like riboregulators: behind the scenes of RNA-mediated regulation of cellular metabolism	5
Structural model of the M7G46 Methyltransferase TrmB in complex with tRNA	5
The paralogues MAGOH and MAGOHB are oncogenic factors in high-grade gliomas and safeguard the splicing of cell division and cell cycle genes	5
Characteristics of Human and Microbiome RNA Profiles in Saliva	5
Retrotransposon life cycle and its impacts on cellular responses	5
Alternative splicing events driven by altered levels of GEMIN5 undergo translation	5
Structural analysis of temperature-dependent alternative splicing of HsfA2 pre-mRNA from tomato plants	5
Efficient fractionation and analysis of ribosome assembly intermediates in human cells	4
Defining the methanogenic SECIS element in vivo by targeted mutagenesis	4
Synthetic biology tools to promote the folding and function of RNA aptamers in mammalian cells	4
Silencing LINC00663 inhibits inflammation and angiogenesis through downregulation of NR2F1 via EBF1 in bladder cancer	4
Nucleolar ribosomal RNA synthesis continues in differentiating lens fiber cells until abrupt nuclear degradation required for ocular lens transparency	4
Novel insights into the roles of tRNA-derived small RNAs	4
Duplex formation between the template and the nascent strand in the transcription-regulating sequences is associated with the site of template switching in SARS – CoV-2	4
The sRNA NsiR4 fine-tunes arginine synthesis in the cyanobacterium Synechocystis sp. PCC 6803 by post-transcriptional regulation of PirA	4
Recent progress in miRNA biogenesis and decay	4
Non-coding RNAs: the extensive and interactive regulators of the blood-brain barrier permeability	4
Structural basis for Dicer-like function of an engineered RNase III variant and insights into the reaction trajectory of two-Mg 2+ -ion catalysis	4
Nucleic acid strand displacement – from DNA nanotechnology to translational regulation	4
Exploring RNA modifications in infectious non-coding circular RNAs	4
CCAR-1 works together with the U2AF large subunit UAF-1 to regulate alternative splicing	4
Might exogenous circular RNAs act as protein-coding transcripts in plants?	4
The role of OncoSnoRNAs and Ribosomal RNA 2’-O-methylation in Cancer	4
Wide-spectrum profiling of plasma cell-free RNA and the potential for health-monitoring	4
Incoherent dual regulation by a SAM-II riboswitch controlling translation at a distance	4
The potential regulatory role of RNA methylation in ovarian cancer	4
Mature microRNA-binding protein QKI promotes microRNA-mediated gene silencing	4
RNA 5-methylcytosine modification and its emerging role as an epitranscriptomic mark	4
Analysis of somatic piRNAs in the malaria mosquito Anopheles coluzzii reveals atypical classes of genic small RNAs	4
The RNA structurome in the asexual blood stages of malaria pathogen plasmodium falciparum	4
Maturation of small nucleolar RNAs: from production to function	4
Structural diversity and biological role of the 5’ untranslated regions of picornavirus	4
Characterization of the binding features between SARS-CoV-2 5’-proximal transcripts of genomic RNA and nucleocapsid proteins	4
Splice site proximity influences alternative exon definition	4