RNA Biology

Article	Citations
CNOT1 regulates circadian behaviour through Per2 mRNA decay in a deadenylation-dependent manner	71
Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genes	64
Shortened CRISPR-Cas9 arrays enable multiplexed gene targeting in bacteria from a smaller DNA footprint	64
An overview of RNA splicing and functioning of splicing factors in land plant chloroplasts	63
Alternative splicing diversifies the transcriptome and proteome of the rice blast fungus during host infection	38
Synthetic RNA biology	36
PacBio full-length transcriptome analysis provides new insights into transcription of chloroplast genomes	35
RNA therapeutics	34
BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification	33
Identification of deleterious non-synonymous single nucleotide polymorphisms in the mRNA decay activator ZFP36L2	32
Architectures and complex functions of tandem riboswitches	32
A translational repression reporter assay for the analysis of RNA-binding protein consensus sites	32
RNA polymerase I mutant affects ribosomal RNA processing and ribosomal DNA stability	32
Regulation of CCR4-NOT complex deadenylase activity and cellular responses by MK2-dependent phosphorylation of CNOT2	31
The secret life of RNA and lipids	31
Endonucleolytic processing plays a critical role in the maturation of ribosomal RNA in Methanococcus maripaludis	29
The Dihydrouridine landscape from tRNA to mRNA: a perspective on synthesis, structural impact and function	28
Assessment of different enrichment methods revealed the optimal approach to identify bovine circRnas	25
A Gypsy element contributes to the nuclear retention and transcriptional regulation of the resident lncRNA in locusts	25
Defining the methanogenic SECIS element in vivo by targeted mutagenesis	24
Synthetic biology tools to promote the folding and function of RNA aptamers in mammalian cells	24
Wide-spectrum profiling of plasma cell-free RNA and the potential for health-monitoring	23
Derailing the host machinery to achieve replication: how viroid and viroid-like RNAs successfully copy their genomes in hostile territory	23
Trafficking and/or division: Distinct roles of nucleoporins based on their location within the nuclear pore complex	23
Serum-MiR-CanPred: deep learning framework for pan-cancer classification and miRNA-targeted drug discovery	23

F/YGG-motif is an intrinsically disordered nucleic-acid binding motif	23
Using sno- lncRNAs as potential markers for Prader-Willi syndrome diagnosis	22
Biology and utilization of R2 retrotransposons	22
An optimized workflow of full-length transcriptome sequencing for accurate fusion transcript identification	22
Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics	22
The Importance of Being RNA-est: considering RNA-mediated ribosome plasticity	21
Small molecule inhibition of RNA binding proteins in haematologic cancer	21
Tissue-specific silencing of integrated transgenes achieved through endogenous RNA interference in Caenorhabditis elegans	21
Mistranslating the genetic code with leucine in yeast and mammalian cells	21
Correction	21
Early posttranscriptional response to tetracycline exposure in a gram-negative soil bacterium reveals unexpected attenuation mechanism of a DUF1127 gene	20
E2-regulated transcriptome complexity revealed by long-read direct RNA sequencing: from isoform discovery to truncated proteins	20
A novel role for nucleolin in splice site selection	19
Expanding the immune-related targetome of miR-155-5p by integrating time-resolved RNA patterns into miRNA target prediction	19
Single-cell analysis of the epitranscriptome: RNA modifications under the microscope	19
Prior metabolite extraction fully preserves RNAseq quality and enables integrative multi-‘omics analysis of the liver metabolic response to viral infection	19
Molecular basis of backsplicing regulation and its application to manipulate circRNA levels	19
Circular at the very beginning: on the initial genomes in the RNA world	18
Global and single-nucleotide resolution detection of 7-methylguanosine in RNA	18
A special issue dedicated to the memory of Jonathan R. Warner (1936-2019), a pioneer of ribosome biology	18
Chimeric oligonucleotides combining guide RNA and single-stranded DNA repair template effectively induce precision gene editing	18
High-throughput mapping of RNA solvent accessibility at the single-nucleotide resolution by RtcB ligation between a fixed 5′-OH-end linker and unique 3′-P-end fragments from hydroxyl radical cleavage	18
MiR-2b-2-5p regulates lipid metabolism and reproduction by targeting CREB in Bactrocera dorsalis	18
Translational impacts of enzymes that modify ribosomal RNA around the peptidyl transferase centre	17
Multiple Oligo assisted RNA Pulldown via Hybridization followed by Mass Spectrometry (MORPH-MS) for exploring the RNA-Protein interactions	17
Structural maturation of the HIV-1 RNA 5’ untranslated region by Pr55 Gag and its maturation products	16
Abasic RNA: its formation and potential role in cellular stress response	16
Post-transcriptional regulation of BIRC5/survivin expression and induction of apoptosis in breast cancer cells by tristetraprolin	16
LncRNA HOTAIR promotes aerobic glycolysis by recruiting Lin28 to induce inflammation and apoptosis in acute lung injury	15
Psychrophilic phage VSW-3 RNA polymerase reduces both terminal and full-length dsRNA byproducts in in vitro transcription	15
Circulating small RNA signatures differentiate accurately the subtypes of muscular dystrophies: small-RNA next-generation sequencing analytics and functional insights	15
Systematic analysis of A-to-I RNA editing upon release of ADAR from the nucleolus	15
A positive feedback loop between LINC01605 and NF-κB pathway promotes tumor growth in nasopharyngeal carcinoma	14
Characterization of CoCas9 nuclease from Capnocytophaga ochracea	14
The oncogenic microRNA miR-222 promotes human LINE-1 retrotransposition	14
Enhanced binding of guanylated poly(A) RNA by the LaM domain of LARP1	14
A comparative survey of the influence of small self-cleaving ribozymes on gene expression in human cell culture	14
Unraveling C-to-U RNA editing events from direct RNA sequencing	14
Why are G-quadruplexes good at preventing protein aggregation?	13
Truncating the spliceosomal ‘rope protein’ Prp45 results in Htz1 dependent phenotypes	13
Rapid and scalable detection of synthetic mRNA byproducts using polynucleotide phosphorylase and polythymidine oligonucleotides	13
RNA structure-altering mutations underlying positive selection on Spike protein reveal novel putative signatures to trace crossing host-species barriers in Betacoronavirus	13
Cleavage sequence specificity of Nsp15	12
Innovative developments and emerging technologies in RNA therapeutics	12
EIciRNAs in focus: current understanding and future perspectives	12
Interactors and effects of overexpressing YlxR/RnpM, a conserved RNA binding protein in cyanobacteria	12
An elusive debate on the evidence for RNA editing in SARS-CoV-2	12
Profile of tRNA-derived short non-coding RNAs during monocyte differentiation and their role in macrophage survival	12
The role of the 5’ sensing function of ribonuclease E in cyanobacteria	12
MiRNAs differentially expressed in vegetative and reproductive organs of Marchantia polymorpha – insights into their expression pattern, gene structures and function	12

LncRNAs in melanoma phenotypic plasticity: emerging targets for promising therapies	12
MicroRNA-mediated regulation of proliferation, lineage differentiation, and apoptosis in neural stem cells	11
Exploring RNA modifications in infectious non-coding circular RNAs	11
The effect of crRNA–target mismatches on cOA-mediated interference by a type III-A CRISPR-Cas system	11
Sensitive and accurate analysis of gene expression signatures enabled by oligonucleotide-labelled cDNA	11
RNA binding of GAPDH controls transcript stability and protein translation in acute myeloid leukemia	11
Early recruitment of PARP-dependent m 8 A RNA methylation at DNA lesions is subsequently accompanied by active DNA demethylation	11
m6A modification of RNA in cervical cancer: role and clinical perspectives	11
Silencing LINC00663 inhibits inflammation and angiogenesis through downregulation of NR2F1 via EBF1 in bladder cancer	11
Structural analysis of temperature-dependent alternative splicing of HsfA2 pre-mRNA from tomato plants	11
Structural and computational studies of HIV-1 RNA	11
Characterization of the binding features between SARS-CoV-2 5’-proximal transcripts of genomic RNA and nucleocapsid proteins	11
Role of circular RNAs in DNA repair	11
Novel non-coding FOXP3 transcript isoform associated to potential transcriptional interference in human regulatory T cells	11
Role of RNA polymerase III transcription and regulation in ischaemic stroke	11
mRNAs sequestered in stress granules recover nearly completely for translation	10
Investigating the role of RNA structures in transcriptional pausing using in vitro assays and in silico analyses	10
Transcriptional landscape of small non-coding RNAs reveals diversity of categories and functions in molluscs	10
The role and function of lncRNA in ageing-associated liver diseases	10
Estrogen receptor alpha (ERα) regulates PARN-mediated nuclear deadenylation and gene expression in breast cancer cells	10
Germ granule-mediated mRNA storage and translational control	10
ncRNAs and polyphenols: new therapeutic strategies for hypertension	10
A scalable system for the fast production of RNA with homogeneous terminal ends	10
Identification and characterization of new structured RNA classes in plants	10
Sexually dimorphic microRNA miR-190 regulates lifespan in male Drosophila	10
PRKCE non-coding variants influence on transcription as well as translation of its gene	10
The landscape of alternative polyadenylation during EMT and its regulation by the RNA-binding protein Quaking	10
Epitranscriptomic regulation in fasting hearts: implications for cardiac health	10
Abundant A-to-I RNA editing in spermatocytes may suppress transposons to compensate for piRNA downregulation in male germlines	9
Synergistic interaction network between the snR30 RNP, Utp23, and ribosomal RNA during ribosome synthesis	9
Two complementing in vivo selection systems based on CCA-trimming exonucleases as a tool to monitor, select and evaluate enzymatic features of tRNA nucle	9
Mechanisms of non-coding RNA-modulated alternative splicing in cancer	9
Noncoding function of super enhancer derived Cpox pre-mRNA in modulating neighbouring gene expression and chromatin interactions	9
Altering rRNA 2’O-methylation pattern during neuronal differentiation is regulated by FMRP	9
Representation of non-coding RNA-mediated regulation of gene expression using the Gene Ontology	9
Correction	8
Dynamic shifts in isomiR profiles during parasite maturation of Fasciola hepatica	8
Comprehensive analysis of prognosis-related alternative splicing events in ovarian cancer	8
A high-throughput search for intracellular factors that affect RNA folding identifies E. coli proteins PepA and YagL as RNA chaperones that promote RNA remodelling	8
Circular RNA Circ_0002762 promotes cell migration and invasion in cervical squamous cell carcinoma via activating RelA/nuclear factor kappa B (Nf-kB) signalling pathway	8
Small regulatory RNAs: from bench to bedside – a keystone symposia meeting report	8
tRNA modifications: greasing the wheels of translation and beyond	8
Regulation of magnesium ion transport in Escherichia coli : insights into the role of the 5’ upstream region in corA expression	8
Evolution of complexity in non-viral oligonucleotide delivery systems: from gymnotic delivery through bioconjugates to biomimetic nanoparticles	8
MicroRNA mimics can distort physiological microRNA effects on immune checkpoints by triggering an antiviral interferon response	8
mRNA vaccine designs for optimal adjuvanticity and delivery	8
RNA-dependent proteome solubility maintenance in Escherichia coli lysates analysed by quantitative mass spectrometry: Proteomic characterization in terms of isoelectric	8
L1CAM immunocapture generates a unique extracellular vesicle population with a reproducible miRNA fingerprint	8
Dual synthesis pathways of scaRNA28 via intronic processing of transformation/transcription domain-associated protein transcripts and a novel independent transcription unit	7
Investigating the correlation between Xrn1-resistant RNAs and frameshifter pseudoknots	7
Differential translation elongation directs protein synthesis in response to acute glucose deprivation in yeast	7
Snhg12 targets miR-199a-5p to regulate osteogenic differentiation of TDSCs via the Fzd4/Wnt/β-catenin pathway	7
Flexible pri-miRNA structures enable tunable production of 5’ isomiRs	7
The androgen receptor messenger RNA: what do we know?	7
Anticodon sequence determines the impact of mistranslating tRNA Ala variants	7
Both host and parasite non-coding RNAs co-ordinate the regulation of macrophage gene expression to reduce pro-inflammatory immune responses and promote tissue repair pathways during infection with	7
C-terminal tagging impairs AGO2 function	7
Fusion transcripts landscape in hepatocellular carcinoma and potential impact on the expression of fusion partners	7
Role of RNA binding proteins of the Drosophila behavior and human splicing (DBHS) family in health and cancer	7
TBP facilitates RNA Polymerase I transcription following mitosis	7
Alternative cleavage and polyadenylation: key regulatory mechanisms in health and disease	7
Direct and indirect effects of spliceosome disruption compromise gene regulation by nonsense-mediated mRNA decay	7
Mature microRNA-binding protein QKI promotes microRNA-mediated gene silencing	6
Analysis of somatic piRNAs in the malaria mosquito Anopheles coluzzii reveals atypical classes of genic small RNAs	6
Plant ribosomes as a score to fathom the melody of 2’- O -methylation across evolution	6
Serine-arginine splicing factor 2 promotes oesophageal cancer progression by regulating alternative splicing of interferon regulatory factor 3	6
RNA-containing extracellular vesicles in infection	6
The sRNA NsiR4 fine-tunes arginine synthesis in the cyanobacterium Synechocystis sp. PCC 6803 by post-transcriptional regulation of PirA	6
Nucleic acid strand displacement – from DNA nanotechnology to translational regulation	6
Retrotransposon life cycle and its impacts on cellular responses	6
CCAR-1 works together with the U2AF large subunit UAF-1 to regulate alternative splicing	6
DMD antisense oligonucleotide mediated exon skipping efficiency correlates with flanking intron retention time and target position within the exon	6
Maturation of small nucleolar RNAs: from production to function	6
Identifying candidate structured RNAs in CRISPR operons	6
RNA folding and functions of RNA helicases in ribosome biogenesis	6
Splice site proximity influences alternative exon definition	6
Translation elongation: measurements and applications	6
The dark side of the ribosome life cycle	5
DeepRNA-Reg: a deep-learning based approach for comparative analysis of CLIP experiments	5
Rna analysis of the regulation of expression and alternative splicing in polycystic ovarian syndrome	5

Pre-mRNA splicing-associated diseases and therapies	5
RNA, the epicenter of genetic information RNA, the epicenter of genetic information , wirtten by John Mattick and Paulo Amaral, CRC Press, Boca Raton, 2022	5
Carrot and stick: how RNase R contributes to function and destruction of the translation machinery	5
Alternative splicing and MicroRNA: epigenetic mystique in male reproduction	5
Evidence for selection on SARS-CoV-2 RNA translation revealed by the evolutionary dynamics of mutations in UTRs and CDSs	5
Circular RNA Pde4dip regulates myogenesis by interacting with Zfp143 mRNA: a novel regulatory axis	5
Cross-kingdom small RNA communication between plants and fungal phytopathogens-recent updates and prospects for future agriculture	5
LINC00857 regulated by ZNF460 enhances the expression of CLDN12 by sponging miR-150-5p and recruiting SRSF1 for alternative splicing to promote epithelial-mesenchymal transformation of pancreatic aden	5
Alternative splicing of the Snap23 microexon is regulated by MBNL, QKI, and RBFOX2 in a tissue-specific manner and is altered in striated muscle diseases	5
Escherichia coli transcriptome assembly from a compendium of RNA-seq data sets	5
Mitochondrial RNA maturation	5
Identification and functional characterization of lncRNAs involved in human monocyte-to-macrophage differentiation	5
The nexus of long noncoding RNAs, splicing factors, alternative splicing and their modulations	5
Nm-Nano: a machine learning framework for transcriptome-wide single-molecule mapping of 2´-O-methylation (Nm) sites in nanopore direct RNA sequencing datasets	5
Three alternative splicing variants of Loquacious play different roles in miRNA- and siRNA-mediated RNAi pathways in Locusta migratoria	5
Enhanced cleavage of genomic CCR5 using CasX2 Max	5
Structures and functions of short argonautes	5
EIF4A3-induced circFAT1 promotes high glucose-induced podocyte damage via miR-30e-5p/SOX4 axis	5
Mechanistic insights into non-coding Y RNA processing	4
Poly(G) 7 box: a functional element of mammalian 18S rRNA involved in translation	4
Novel compounds that synergize with aminoglycoside G418 or eRF3 degraders for translational readthrough of nonsense mutant TP53 and PTEN	4
A novel strategy for orthogonal genetic regulation on different RNA targeted loci simultaneously	4
The continuing discovery on the evidence for RNA editing in SARS-CoV-2	4
An introduction to PIWI-interacting RNAs (piRNAs) in the context of metazoan small RNA silencing pathways	4
Ordering events in a developing genetic code	4
Optimized chemical labeling method for isolation of 8-oxoG-modified RNA, ChLoRox-Seq, identifies mRNAs enriched in oxidation and transcriptome-wide distribution biases of oxidation events post environ	4
Systematic mapping of small nucleolar RNA interactions in human cells	4
Origin of ribonucleotide recognition motifs through ligand mimicry at early earth	4
Temperature-sensing riboceptors	4
Inhibition of mitochondrial complex III or dihydroorotate dehydrogenase (DHODH) triggers formation of poly(A) + RNA foci adjacent to nuclear speckles following activ	4
The LARP6 La module from Tetrabaena socialis reveals structural and functional differences from plant and animal LARP6 homologues	4
Diverse RNAs in human umbilical cord-derived exosomes and their therapeutic potential	4
Shared and organ-specific gene-expression programs during the development of the cochlea and the superior olivary complex	4