OOIR: Observatory of International Research

Papers

(The TQCC of RNA Biology is 11. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-05-01 to 2024-05-01.)

Article	Citations
Secondary structure of the SARS-CoV-2 5’-UTR	98
Recent advances in the regulation of plant miRNA biogenesis	70
FTO demethylates m6A modifications in HOXB13 mRNA and promotes endometrial cancer metastasis by activating the WNT signalling pathway	63
Off-target effects of RNAi correlate with the mismatch rate between dsRNA and non-target mRNA	58
3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists	50
The stress specific impact of ALKBH1 on tRNA cleavage and tiRNA generation	49
Computational methods for RNA modification detection from nanopore direct RNA sequencing data	48
RNA-binding proteins in neurological development and disease	46
Transfer RNAs: diversity in form and function	44
Adenosine-to-inosine RNA editing in neurological development and disease	41
OncotRF: an online resource for exploration of tRNA-derived fragments in human cancers	40
Human umbilical cord mesenchymal stem cells-derived exosomal microRNA-451a represses epithelial–mesenchymal transition of hepatocellular carcinoma cells by inhibiting ADAM10	39
The emerging role and significance of circular RNAs in viral infections and antiviral immune responses: possible implication as theranostic agents	37
Small molecule inhibitor of Igf2bp1 represses Kras and a pro-oncogenic phenotype in cancer cells	36
RNA-based therapeutics for neurological diseases	35
The role of lncRNAs in innate immunity and inflammation	35
Site-directed RNA editing: recent advances and open challenges	34
The diversity, plasticity, and adaptability of cap-dependent translation initiation and the associated machinery	34
Cellular miR-150-5p may have a crucial role to play in the biology of SARS-CoV-2 infection by regulating nsp10 gene	34
Advances in siRNA therapeutics and synergistic effect on siRNA activity using emerging dual ribose modifications	31
New progresses of circular RNA biology: from nuclear export to degradation	31
Insights into lncRNAs in Alzheimer’s disease mechanisms	31
Linking the association between circRNAs and Alzheimer’s disease progression by multi-tissue circular RNA characterization	31
Differential roles of YTHDF1 and YTHDF3 in embryonic stem cell-derived cardiomyocyte differentiation	28
Long non-coding RNA NEAT1_1 ameliorates TDP-43 toxicity in in vivo models of TDP-43 proteinopathy	27

LncRNAs in adaptive immunity: role in physiological and pathological conditions	27
Circular RNA circ-LDLRAD3 serves as an oncogene to promote non-small cell lung cancer progression by upregulating SLC1A5 through sponging miR-137	27
Mapping rRNA 2’-O-methylations and identification of C/D snoRNAs in Arabidopsis thaliana plants	27
Role of the RNA-binding protein La in cancer pathobiology	25
Functions and mechanisms of circular RNAs in regulating stem cell differentiation	25
Reprogramming of m⁶A epitranscriptome is crucial for shaping of transcriptome and proteome in response to hypoxia	25
MIR210HG regulates glycolysis, cell proliferation, and metastasis of pancreatic cancer cells through miR-125b-5p/HK2/PKM2 axis	25
The distinct roles of zinc finger CCHC-type (ZCCHC) superfamily proteins in the regulation of RNA metabolism	25
Clinical advances of RNA therapeutics for treatment of neurological and neuromuscular diseases	25
Introducing differential RNA-seq mapping to track the early infection phase forPseudomonasphage ɸKZ	24
mRNA m5C controls adipogenesis by promoting CDKN1A mRNA export and translation	24
Non-coding RNAs: the extensive and interactive regulators of the blood-brain barrier permeability	23
Molecular mechanism of microRNA-21 promoting Schwann cell proliferation and axon regeneration during injured nerve repair	23
Novel insights into the roles of tRNA-derived small RNAs	23
Combining tRNA sequencing methods to characterize plant tRNA expression and post-transcriptional modification	23
The role of OncoSnoRNAs and Ribosomal RNA 2’-O-methylation in Cancer	22
Molecular correction of Duchenne muscular dystrophy by splice modulation and gene editing	22
Constitutive and variable 2’-O-methylation (Nm) in human ribosomal RNA	21
Axonal mRNA translation in neurological disorders	21
miR-34 regulates larval growth and wing morphogenesis by directly modulating ecdysone signalling and cuticle protein inBombyx mori	21
Unique features of the m⁶A methylome and its response to drought stress in sea buckthorn (Hippophae rhamnoides Linn.)	21
IGF2BP2 stabilized FBXL19-AS1 regulates the blood-tumour barrier permeability by negatively regulating ZNF765 by STAU1-mediated mRNA decay	21
Innovative developments and emerging technologies in RNA therapeutics	20
Demystifying mRNA vaccines: an emerging platform at the forefront of cryptic diseases	20
RNA folding and functions of RNA helicases in ribosome biogenesis	20
TRA2A-induced upregulation of LINC00662 regulates blood-brain barrier permeability by affecting ELK4 mRNA stability in Alzheimer’s microenvironment	20
MHC Class III RNA Binding Proteins and Immunity	19
On the functional relevance of spatiotemporally-specific patterns of experience-dependent long noncoding RNA expression in the brain	19
Peripheral blood microRNAs and the COVID-19 patient: methodological considerations, technical challenges and practice points	19
Enterotoxigenic Escherichia coli infection promotes enteric defensin expression via FOXO6-METTL3-m⁶A-GPR161 signalling axis	19
RNA 5-methylcytosine modification and its emerging role as an epitranscriptomic mark	19
Silencing long non-coding RNA NEAT1 attenuates rheumatoid arthritis via the MAPK/ERK signalling pathway by downregulating microRNA-129 and microRNA-204	19
Splice variants of lncRNA RNA ANRIL exert opposing effects on endothelial cell activities associated with coronary artery disease	19
CBRPP: a new RNA-centric method to study RNA–protein interactions	18
The isolated La-module of LARP1 mediates 3’ poly(A) protection and mRNA stabilization, dependent on its intrinsic PAM2 binding to PABPC1	18
20-Hydroxyecdysone-responsive microRNAs of insects	18
NEDD4 triggers FOXA1 ubiquitination and promotes colon cancer progression under microRNA-340-5p suppression and ATF1 upregulation	18
HSM6AP: a high-precision predictor for the HomosapiensN6-methyladenosine (m^6 A) based on multiple weights and feature stitching	17
Evidence for selection on SARS-CoV-2 RNA translation revealed by the evolutionary dynamics of mutations in UTRs and CDSs	17
IGF2BP1 is a targetable SRC/MAPK-dependent driver of invasive growth in ovarian cancer	17
Circular ANRIL isoforms switch from repressors to activators of p15/CDKN2B expression during RAF1 oncogene-induced senescence	17
Identification of spliceosome components pivotal to breast cancer survival	17
Bulges control pri-miRNA processing in a position and strand-dependent manner	17
Emerging roles of long non-coding RNAs in the p53 network	17
Mechanisms of non-coding RNA-modulated alternative splicing in cancer	17
A comprehensive coverage insurance for cells: revealing links between ribosome collisions, stress responses and mRNA surveillance	17
Oxidative stress enhances the expression of 2′,3′-cyclic phosphate-containing RNAs	17
Long non-coding RNA HOTAIR regulates myeloid differentiation through the upregulation of p21 via miR-17-5p in acute myeloid leukaemia	16
Mitochondrial noncoding RNAs: new wine in an old bottle	16
Regulation of the p53 expression profile by hnRNP K under stress conditions	16

Large-scale transcriptome-wide profiling of microRNAs in human placenta and maternal plasma at early to mid gestation	16
Xrn1 influence on gene transcription results from the combination of general effects on elongating RNA pol II and gene-specific chromatin configuration	16
Role of PIWI-like 4 in modulating neuronal differentiation from human embryonal carcinoma cells	16
Differential transcription profiling of the phage LUZ19 infection process in different growth media	16
The multifaceted functions of the Fat mass and Obesity-associated protein (FTO) in normal and cancer cells	16
The regulatory world of tRNA fragments beyond canonical tRNA biology	15
The diversity of Shine-Dalgarno sequences sheds light on the evolution of translation initiation	15
LARP1 and LARP4: up close with PABP for mRNA 3’ poly(A) protection and stabilization	15
tRNA-modifying enzyme mutations induce codon-specific mistranslation and protein aggregation in yeast	15
New substrates and determinants for tRNA recognition of RNA methyltransferase DNMT2/TRDMT1	15
Rbm24 regulates inner-ear-specific alternative splicing and is essential for maintaining auditory and motor coordination	15
Interrogating lncRNA functions via CRISPR/Cas systems	15
RNA transport from transcription to localized translation: a single molecule perspective	15
Utilization of microRNAs and their regulatory functions for improving biotic stress tolerance in tea plant [Camellia sinensis (L.) O. Kuntze]	15
Elucidating the cellular dynamics of the brain with single-cell RNA sequencing	14
Insights into circular RNAs: their biogenesis, detection, and emerging role in cardiovascular disease	14
Dissecting protein domain variability in the core RNA interference machinery of five insect orders	14
Psychrophilic phage VSW-3 RNA polymerase reduces both terminal and full-length dsRNA byproducts in in vitro transcription	14
Highly dynamic transcriptional reprogramming and shorter isoform shifts under acute stresses during biological invasions	14
Structural and functional insights into human tRNA guanine transglycosylase	14
DARS-AS1 recruits METTL3/METTL14 to bind and enhance DARS mRNA m ⁶ A modification and translation for cytoprotective autophagy in cervical cancer	14
Discovery of new group I-D introns leads to creation of subtypes and link to an adaptive response of the mitochondrial genome in fungi	14
The DExD box ATPase DDX55 is recruited to domain IV of the 28S ribosomal RNA by its C-terminal region	14
The effects of RNA editing in cancer tissue at different stages in carcinogenesis	14
LncRBase V.2: an updated resource for multispecies lncRNAs and ClinicLSNP hosting genetic variants in lncRNAs for cancer patients	14
Inhibition of CDK9 activity compromises global splicing in prostate cancer cells	13
RNA methylation in chloroplasts or mitochondria in plants	13
Selective packaged circular RNAs in milk extracellular vesicles during Staphylococcus aureus infection may have potential against bacterial infection	13
Comparative analysis of circular RNA enrichment methods	13
Comprehensive analysis of the translatome reveals the relationship between the translational and transcriptional control in high fat diet-induced liver steatosis	13
Long non-coding RNA RP11-283G6.5 confines breast cancer development through modulating miR-188-3p/TMED3/Wnt/β-catenin signalling	13
Bisulphite miRNA-seq reveals widespread CpG and non-CpG 5-(hydroxy)methyl-Cytosine in human microRNAs	13
Alternative splicing and MicroRNA: epigenetic mystique in male reproduction	13
LncRNAs as tumor cell intrinsic factors that affect cancer immunotherapy	13
Bacterial RNA chaperones and chaperone-like riboregulators: behind the scenes of RNA-mediated regulation of cellular metabolism	13
Comprehensive analysis of the pre-ribosomal RNA maturation pathway in a methanoarchaeon exposes the conserved circularization and linearization mode in archaea	13
Stabilize and connect: the role of LARP7 in nuclear non-coding RNA metabolism	12
In lysate RNA digestion provides insights into the angiogenin’s specificity towards transfer RNAs	12
Accurate characterization of Escherichia coli tRNA modifications with a simple method of deep-sequencing library preparation	12
Might exogenous circular RNAs act as protein-coding transcripts in plants?	12
Subcellular relocalization and nuclear redistribution of the RNA methyltransferases TRMT1 and TRMT1L upon neuronal activation	12
LncRNA CASC21 induces HGH1 to mediate colorectal cancer cell proliferation, migration, EMT and stemness	12
Accurate identification of RNA D modification using multiple features	12
Deciphering nucleotide modification-induced structure and stability changes	12
The large family of PC4-like domains – similar folds and functions throughout all kingdoms of life	12
Comprehensive discovery of novel structured noncoding RNAs in 26 bacterial genomes	12
Alu RNA and their roles in human disease states	12
Alternative splicing diversifies the transcriptome and proteome of the rice blast fungus during host infection	12
In silico identification of pseudo-exon activation events in personal genome and transcriptome data	12
Broad-range RNA modification analysis of complex biological samples using rapid C18-UPLC-MS	12
Identification of RNAs bound by Hfq reveals widespread RNA partners and a sporulation regulator in the human pathogen Clostridioides difficile	12
Ctcf haploinsufficiency mediates intron retention in a tissue-specific manner	12
Tricks and threats of RNA viruses – towards understanding the fate of viral RNA	12
Read-through circular RNAs reveal the plasticity of RNA processing mechanisms in human cells	12
Gene co-expression and alternative splicing analysis of key metabolic tissues to unravel the regulatory signatures of fatty acid composition in cattle	12
U1 snRNP telescripting: molecular mechanisms and beyond	11
SR7 – a dual-function antisense RNA from Bacillus subtilis	11
In vivo discovery of RNA proximal proteins via proximity-dependent biotinylation	11
Epigenomics-based identification of oestrogen-regulated long noncoding RNAs in ER+ breast cancer	11
Guanine Nucleotide-Binding Protein-Like 1 (GNL1) binds RNA G-quadruplex structures in genes associated with Parkinson’s disease	11
Caenorhabditis eleganssystemic RNA interference defective protein 1 enhances RNAi efficiency in a lepidopteran insect, the fall armyworm, in a tissue-specific manner	11
SUVA: splicing site usage variation analysis from RNA-seq data reveals highly conserved complex splicing biomarkers in liver cancer	11
Rpb4 and Puf3 imprint and post-transcriptionally control the stability of a common set of mRNAs in yeast	11
Evolution of complexity in non-viral oligonucleotide delivery systems: from gymnotic delivery through bioconjugates to biomimetic nanoparticles	11
Thrombosis-related circulating miR-16-5p is associated with disease severity in patients hospitalised for COVID-19	11
mRNAs sequestered in stress granules recover nearly completely for translation	11
M6A-BiNP: predicting N⁶-methyladenosine sites based on bidirectional position-specific propensities of polynucleotides and pointwise joint mutual information	11
CITEMO ^XMBD : A flexible single-cell multimodal omics analysis framework to reveal the heterogeneity of immune cells	11
The mRNA derived MalH sRNA contributes to alternative carbon source utilization by tuning maltoporin expression in E. coli	11
Genomic amplification of long noncoding RNA HOTAIRM1 drives anaplastic thyroid cancer progression via repressing miR-144 biogenesis	11
Human cytomegalovirus (HCMV)-encoded microRNAs: potential biomarkers and clinical applications	11
ncRNAs and polyphenols: new therapeutic strategies for hypertension	11