OOIR: Observatory of International Research

Papers

(The TQCC of RNA Biology is 11. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-06-01 to 2025-06-01.)

Article	Citations
Shortened CRISPR-Cas9 arrays enable multiplexed gene targeting in bacteria from a smaller DNA footprint	90
CNOT1 regulates circadian behaviour through Per2 mRNA decay in a deadenylation-dependent manner	57
Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genes	51
Bisulphite miRNA-seq reveals widespread CpG and non-CpG 5-(hydroxy)methyl-Cytosine in human microRNAs	50
A small ribosome-associated ncRNA globally inhibits translation by restricting ribosome dynamics	49
An overview of RNA splicing and functioning of splicing factors in land plant chloroplasts	49
Interplays of different types of epitranscriptomic mRNA modifications	45
Alternative splicing diversifies the transcriptome and proteome of the rice blast fungus during host infection	44
Identification of deleterious non-synonymous single nucleotide polymorphisms in the mRNA decay activator ZFP36L2	43
Synthetic RNA biology	36
Endonucleolytic processing plays a critical role in the maturation of ribosomal RNA in Methanococcus maripaludis	34
BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification	34
A translational repression reporter assay for the analysis of RNA-binding protein consensus sites	32
RNA therapeutics	32
Regulation of CCR4-NOT complex deadenylase activity and cellular responses by MK2-dependent phosphorylation of CNOT2	31
PacBio full-length transcriptome analysis provides new insights into transcription of chloroplast genomes	31
Architectures and complex functions of tandem riboswitches	29
RNA polymerase I mutant affects ribosomal RNA processing and ribosomal DNA stability	29
The Dihydrouridine landscape from tRNA to mRNA: a perspective on synthesis, structural impact and function	27
Wide-spectrum profiling of plasma cell-free RNA and the potential for health-monitoring	26
Selectivity of Exportin 5 binding to human precursor microRNAs	26
New substrates and determinants for tRNA recognition of RNA methyltransferase DNMT2/TRDMT1	26
Assessment of different enrichment methods revealed the optimal approach to identify bovine circRnas	24
European COST action CA16120 EPITRAN: the first four years and beyond	23
A Gypsy element contributes to the nuclear retention and transcriptional regulation of the resident lncRNA in locusts	23

Efficient fractionation and analysis of ribosome assembly intermediates in human cells	23
Defining the methanogenic SECIS element in vivo by targeted mutagenesis	23
Synthetic biology tools to promote the folding and function of RNA aptamers in mammalian cells	23
F/YGG-motif is an intrinsically disordered nucleic-acid binding motif	22
Trafficking and/or division: Distinct roles of nucleoporins based on their location within the nuclear pore complex	21
Structural insights into the inactivation of the type I-F CRISPR-Cas system by anti-CRISPR proteins	21
Small molecule inhibition of RNA binding proteins in haematologic cancer	21
Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics	21
Using sno- lncRNAs as potential markers for Prader-Willi syndrome diagnosis	20
Mistranslating the genetic code with leucine in yeast and mammalian cells	20
Correction	20
An optimized workflow of full-length transcriptome sequencing for accurate fusion transcript identification	20
Prior metabolite extraction fully preserves RNAseq quality and enables integrative multi-‘omics analysis of the liver metabolic response to viral infection	19
Expanding the immune-related targetome of miR-155-5p by integrating time-resolved RNA patterns into miRNA target prediction	19
Tissue-specific silencing of integrated transgenes achieved through endogenous RNA interference in Caenorhabditis elegans	19
Single-cell analysis of the epitranscriptome: RNA modifications under the microscope	19
The Importance of Being RNA-est: considering RNA-mediated ribosome plasticity	19
A novel role for nucleolin in splice site selection	19
Chimeric oligonucleotides combining guide RNA and single-stranded DNA repair template effectively induce precision gene editing	18
The RBS1 domain of Gemin5 is intrinsically unstructured and interacts with RNA through conserved Arg and aromatic residues	18
Global and single-nucleotide resolution detection of 7-methylguanosine in RNA	18
MiR-2b-2-5p regulates lipid metabolism and reproduction by targeting CREB in Bactrocera dorsalis	17
Production of human translation-competent lysates using dual centrifugation	17
Circular at the very beginning: on the initial genomes in the RNA world	17
Comparative analysis of circular RNA enrichment methods	17
An integrated DNA and RNA variant detector identifies a highly conserved three base exon in the MAP4K5 kinase locus	17
Gld2 activity and RNA specificity is dynamically regulated by phosphorylation and interaction with QKI-7	17
piRNAQuest V.2: an updated resource for searching through the piRNAome of multiple species	17
Enhanced binding of guanylated poly(A) RNA by the LaM domain of LARP1	16
Structural maturation of the HIV-1 RNA 5’ untranslated region by Pr55 ^Gag and its maturation products	16
Circulating small RNA signatures differentiate accurately the subtypes of muscular dystrophies: small-RNA next-generation sequencing analytics and functional insights	16
Characterization of CoCas9 nuclease from Capnocytophaga ochracea	16
Unraveling C-to-U RNA editing events from direct RNA sequencing	15
A special issue dedicated to the memory of Jonathan R. Warner (1936-2019), a pioneer of ribosome biology	15
Translational impacts of enzymes that modify ribosomal RNA around the peptidyl transferase centre	15
High-throughput mapping of RNA solvent accessibility at the single-nucleotide resolution by RtcB ligation between a fixed 5′-OH-end linker and unique 3′-P-end fragments from hydroxyl radical cleavage	15
Abasic RNA: its formation and potential role in cellular stress response	15
Post-transcriptional regulation of BIRC5/survivin expression and induction of apoptosis in breast cancer cells by tristetraprolin	15
Psychrophilic phage VSW-3 RNA polymerase reduces both terminal and full-length dsRNA byproducts in in vitro transcription	14
Unique features of the m⁶A methylome and its response to drought stress in sea buckthorn (Hippophae rhamnoidesLinn.)	14
The oncogenic microRNA miR-222 promotes human LINE-1 retrotransposition	14
A positive feedback loop between LINC01605 and NF-κB pathway promotes tumor growth in nasopharyngeal carcinoma	14
Multiple Oligo assisted RNA Pulldown via Hybridization followed by Mass Spectrometry (MORPH-MS) for exploring the RNA-Protein interactions	14
A comparative survey of the influence of small self-cleaving ribozymes on gene expression in human cell culture	14
LncRNA HOTAIR promotes aerobic glycolysis by recruiting Lin28 to induce inflammation and apoptosis in acute lung injury	14
EIciRNAs in focus: current understanding and future perspectives	14
LncRNAs in melanoma phenotypic plasticity: emerging targets for promising therapies	13
Maturation of 23S rRNA includes removal of helix H1 in many bacteria	13
The role of the 5’ sensing function of ribonuclease E in cyanobacteria	13
RNA structure-altering mutations underlying positive selection on Spike protein reveal novel putative signatures to trace crossing host-species barriers in Betacoronavirus	13

Epitranscriptomic signatures in stem cell differentiation to the neuronal lineage	13
Alternative polyadenylated mRNAs behave as asynchronous rhythmic transcription in Arabidopsis	13
Interactors and effects of overexpressing YlxR/RnpM, a conserved RNA binding protein in cyanobacteria	13
Rapid and scalable detection of synthetic mRNA byproducts using polynucleotide phosphorylase and polythymidine oligonucleotides	13
Truncating the spliceosomal ‘rope protein’ Prp45 results in Htz1 dependent phenotypes	13
LncRNA CASC21 induces HGH1 to mediate colorectal cancer cell proliferation, migration, EMT and stemness	12
MiRNAs differentially expressed in vegetative and reproductive organs of Marchantia polymorpha – insights into their expression pattern, gene structures and function	12
Innovative developments and emerging technologies in RNA therapeutics	12
Exploring RNA modifications in infectious non-coding circular RNAs	12
Role of circular RNAs in DNA repair	12
An elusive debate on the evidence for RNA editing in SARS-CoV-2	12
Cleavage sequence specificity of Nsp15	12
Why are G-quadruplexes good at preventing protein aggregation?	12
Structural analysis of temperature-dependent alternative splicing of HsfA2 pre-mRNA from tomato plants	12
Comparative study of bioinformatic tools for the identification of chimeric RNAs from RNA Sequencing	12
Integrated multi-omics reveals common properties underlying stress granule and P-body formation	12
Non-coding RNAs: the extensive and interactive regulators of the blood-brain barrier permeability	12
Export of RNA-derived modified nucleosides by equilibrative nucleoside transporters defines the magnitude of autophagy response and Zika virus replication	11
Structural and computational studies of HIV-1 RNA	11
The effect of crRNA–target mismatches on cOA-mediated interference by a type III-A CRISPR-Cas system	11
Cellular miR-150-5p may have a crucial role to play in the biology of SARS-CoV-2 infection by regulating nsp10 gene	11
RNA 5-methylcytosine modification and its emerging role as an epitranscriptomic mark	11
The landscape of alternative polyadenylation during EMT and its regulation by the RNA-binding protein Quaking	11
Early recruitment of PARP-dependent m ⁸ A RNA methylation at DNA lesions is subsequently accompanied by active DNA demethylation	11
Hairpin sequence and structure is associated with features of isomiR biogenesis	11
Role of RNA polymerase III transcription and regulation in ischaemic stroke	11
The RNA editing enzyme ADAR2 restricts L1 mobility	11
Characterization of the binding features between SARS-CoV-2 5’-proximal transcripts of genomic RNA and nucleocapsid proteins	11
hnRNPH1-MTR4 complex-mediated regulation of NEAT1v2 stability is critical for IL8 expression	11
Silencing LINC00663 inhibits inflammation and angiogenesis through downregulation of NR2F1 via EBF1 in bladder cancer	11
m6A modification of RNA in cervical cancer: role and clinical perspectives	11
RR3DD: an RNA global structure-based RNA three-dimensional structural classification database	11