Cytometry Part A

Article	Citations
OMIP‐069: Forty‐Color Full Spectrum Flow Cytometry Panel for Deep Immunophenotyping of Major Cell Subsets in Human Peripheral Blood	194
Lymphocyte Subset Counts in COVID‐19 Patients: A Meta‐Analysis	175
Dengue Fever, COVID‐19 (SARS‐CoV‐2), and Antibody‐Dependent Enhancement (ADE): A Perspective	85
Integration, exploration, and analysis of high‐dimensional single‐cell cytometry data using Spectre	81
Little to no expression of angiotensin‐converting enzyme‐2 on most human peripheral blood immune cells but highly expressed on tissue macrophages	80
Decrease of Non‐Classical and Intermediate Monocyte Subsets in Severe Acute SARS‐CoV‐2 Infection	76
Monocyte HLA‐DR Measurement by Flow Cytometry in COVID‐19 Patients: An Interim Review	61
Current trends in flow cytometry automated data analysis software	52
Evaluation of Exosome Proteins by on‐Bead Flow Cytometry	51
Evaluating spectral cytometry for immune profiling in viral disease	50
Real‐Time Stain‐Free Classification of Cancer Cells and Blood Cells Using Interferometric Phase Microscopy and Machine Learning	49
Fluorescence and Light Scatter Calibration Allow Comparisons of Small Particle Data in Standard Units across Different Flow Cytometry Platforms and Detector Settings	42
Development of a 43 color panel for the characterization of conventional and unconventional T‐cell subsets, B cells, NK cells, monocytes, dendritic cells, and innate lymphoid cells using sp	42
Application‐based guidelines for best practices in plant flow cytometry	35
Refractive Index Changes of Cells and Cellular Compartments Upon Paraformaldehyde Fixation Acquired by Tomographic Phase Microscopy	35
High‐Resolution Imaging Flow Cytometry Reveals Impact of Incubation Temperature on Labeling of Extracellular Vesicles with Antibodies	33
Hematologist‐Level Classification of Mature B‐Cell Neoplasm Using Deep Learning on Multiparameter Flow Cytometry Data	33
Reference standards for flow cytometric estimation of absolute nuclear DNA content in plants	32
The evolution of spectral flow cytometry	31
Comprehensive Phenotyping of Human Dendritic Cells and Monocytes	29
The Challenge of Distinguishing Cell–Cell Complexes from Singlet Cells in Non‐Imaging Flow Cytometry and Single‐Cell Sorting	26
Evaluation of Caspase‐3 Activity During Apoptosis with Fluorescence Lifetime‐Based Cytometry Measurements and Phasor Analyses	26
PeacoQC: Peak‐based selection of high quality cytometry data	24
A streamlined whole blood CyTOF workflow defines a circulating immune cell signature of COVID‐19	24
Deep learning based digital cell profiles for risk stratification of urine cytology images	23

CD169 and CD64 could help differentiate bacterial from CoVID‐19 or other viral infections in the Emergency Department	23
MIRIAM: A machine and deep learning single‐cell segmentation and quantification pipeline for multi‐dimensional tissue images	21
Full spectrum flow cytometry and mass cytometry: A 32‐marker panel comparison	20
Comprehensive phenotyping of human peripheral blood B lymphocytes in healthy conditions	19
OMIP 071: A 31‐Parameter Flow Cytometry Panel for In‐Depth Immunophenotyping of Human T‐Cell Subsets Using Surface Markers	19
Isolation of plant nuclei for estimation of nuclear DNA content: Overview and best practices	19
Chromosome analysis and sorting	18
Improved Flow Cytometric Light Scatter Detection of Submicron‐Sized Particles by Reduction of Optical Background Signals	18
Computational flow cytometry as a diagnostic tool in suspected‐myelodysplastic syndromes	17
Semi‐automated background removal limits data loss and normalizes imaging mass cytometry data	17
A Cancer Biologist's Primer on Machine Learning Applications in High‐Dimensional Cytometry	17
OMIP‐079: Cell cycle of CD4+ and CD8+ naïve/memory T cell subsets, and of Treg cells from mouse spleen	17
MIFlowCyt‐EV: The Next Chapter in the Reporting and Reliability of Single Extracellular Vesicle Flow Cytometry Experiments	17
Deep learning‐enabled imaging flow cytometry for high‐speedCryptosporidium and Giardia detection	16
Best practices in plant cytometry	15
Fluorescence activated cell sorting—A selective tool for plant cell isolation and analysis	14
Flow cytometric analysis of pollen and spores: An overview of applications and methodology	14
Image‐Based Cell Profiling Enables Quantitative Tissue Microscopy in Gastroenterology	14
Sheath fluid impacts the depletion of cellular metabolites in cells afflicted by sorting induced cellular stress (SICS)	13
The Coulter Principle: A history	13
In Situ Classification of Cell Types in Human Kidney Tissue Using 3D Nuclear Staining	13
Unlocking autofluorescence in the era of full spectrum analysis: Implications for immunophenotype discovery projects	12
OMIP‐068: High‐Dimensional Characterization of Global and Antigen‐Specific B Cells in Chronic Infection	12
A Deep Learning Pipeline for Nucleus Segmentation	12
Recent Developments in the Application of Flow Cytometry to Advance our Understanding of Mycobacteriumtuberculosis Physiology and Pathogenesis	12
A microfluidic cytometer for white blood cell analysis	12
Imaging Flow Cytometry for Phylogenetic and MorphologicallyBased Functional Group Clustering of a Natural Phytoplankton Community over 1 Year in an Urban Pond	12
Assessment of chilling injury in hypothermic stored boar spermatozoa by multicolor flow cytometry	12
Monocyte CD169 expression in COVID‐19 patients upon intensive care unit admission	12
OMIP‐064: A 27‐Color Flow Cytometry Panel to Detect and Characterize Human NK Cells and Other Innate Lymphoid Cell Subsets, MAIT Cells, and γδ T Cells	12
Imaging Flow Cytometry Analysis of CEACAM Binding to Opa‐Expressing Neisseria gonorrhoeae	11
Identification of fetal liver stroma in spectral cytometry using the parameter autofluorescence	11
Phenotypic Analysis of the Mouse Hematopoietic Hierarchy Using Spectral Cytometry: From Stem Cell Subsets to Early Progenitor Compartments	11
Platelet mass cytometry: Optimization of sample, reagent, and analysis parameters	11
Characterization of Chicken Leukocyte Subsets from Lymphatic Tissue by Flow Cytometry	11
OMIP 083: A 21‐marker 18‐color flow cytometry panel for in‐depth phenotyping of human peripheral monocytes	11
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Simplified Instrument Calibration for Wide‐Field Fluorescence Resonance Energy Transfer (FRET) Measured by the Sensitized Emission Method	10
Plant material selection, collection, preservation, and storage for nuclear DNA content estimation	10
Best practices in the flow cytometry of microalgae	10
A comparison of spectral unmixing to conventional compensation for the calculation of fluorochrome abundances from flow cytometric data	10
flowCut: An R package for automated removal of outlier events and flagging of files based on time versus fluorescence analysis	10
Single cell multiomic analysis of T cell exhaustion in vitro	10
Acoustophoresis Enables the Label‐Free Separation of Functionally Different Subsets of Cultured Bone Marrow Stromal Cells	10
Sheathless microflow cytometer utilizing two bulk standing acoustic waves	10
A human receptor occupancy assay to measure anti‐PD‐1 binding in patients with prior anti‐PD‐1	10
OMIP‐067: 28‐Color Flow Cytometry Panel to Evaluate Human T‐Cell Phenotype and Function	10
OMIP 078: A 31‐parameter panel for comprehensive immunophenotyping of multiple immune cells in human peripheral blood mononuclear cells	10
Ab initio spillover compensation in mass cytometry data	10
CD56, HLA‐DR, and CD45 recognize a subtype of childhood AML harboring CBFA2T3‐GLIS2 fusion transcript	10

Monitoring anti‐CD19 chimeric antigen receptor T cell population by flow cytometry and its consistency with digital droplet polymerase chain reaction	9
Sustained cellular immunity in adults recovered from mild COVID‐19	9
Improvements in Flow Cytometry‐Based Cytotoxicity Assay	9
Identification of critical hemodilution by artificial intelligence in bone marrow assessed for minimal residual disease analysis in acute myeloid leukemia: The Cinderella method	9
Insights in Chloroquine Action: Perspectives and Implications in Malaria and COVID‐19	9
A Paradigm Shift in Nuclear Chromatin Interpretation: From Qualitative Intuitive Recognition to Quantitative Texture Analysis of Breast Cancer Cell Nuclei	9
Multiparameter Flow Cytometry Assay for Analysis of Nitrosative Stress Status in Human Spermatozoa	9
OMIP‐065: Dog Immunophenotyping and T‐Cell Activity Evaluation with a 14‐Color Panel	8
Impact of age and gender on lymphocyte subset counts in patients with COVID‐19	8
Erythrocyte lysis and angle‐resolved light scattering measured by scanning flow cytometry result to 48 indices quantifying a gas exchange function of the human organism	8
Detecting Förster resonance energy transfer in living cells by conventional and spectral flow cytometry	8
Machine learning for cell classification and neighborhood analysis in glioma tissue	8
DebarcodeR increases fluorescent cell barcoding capacity and accuracy	8
OMIP 075: A 22‐color panel for the measurement of antigen‐specific T‐cell responses in human and nonhuman primates	8
Data File Standard for Flow Cytometry, Version FCS 3.2	8
Comprehensive Phenotyping of Peripheral Blood T Lymphocytes in Healthy Mice	8
Comprehensive phenotyping of endothelial cells using flow cytometry 2: Human	8
OMIP‐084: 28‐color full spectrum flow cytometry panel for the comprehensive analysis of human γδ T cells	8
High‐Throughput Image Cytometry Detection Method for CAR‐T Transduction, Cell Proliferation, and Cytotoxicity Assays	8
Single cell capture, isolation, and long‐term in‐situ imaging using quantitative self‐interference spectroscopy	8
TITAN: An end‐to‐end data analysis environment for the Hyperion™ imaging system	8
Analytical performance of a 25‐marker spectral cytometry immune monitoring assay in peripheral blood	8
Coupling Microscopy and Flow Cytometry for a Comprehensive Characterization of Nanoparticle Production in Insect Cells	8
Attention Mask R‐CNN with edge refinement algorithm for identifying circulating genetically abnormal cells	8
Sheathless acoustic based flow cell sorter for enrichment of rare cells	7
Comprehensive phenotyping of peripheral blood monocytes in healthy bovine	7
Recent progress in plasmonic nanoparticle‐based biomarker detection and cytometry for the study of central nervous system disorders	7
Full spectrum cytometry improves the resolution of highly autofluorescent biological samples: Identification of myeloid cells in regenerating skeletal muscles	7
Alternative methods of viability determination in single cell mass cytometry	7
Morphology analysis of unlabeled red blood cells based on quantitative differential phase contrast microscopy	7
Spatial analysis for highly multiplexed imaging data to identify tissue microenvironments	7
OMIP‐066: Identification of Novel Subpopulations of Human Group 2 Innate Lymphoid Cells in Peripheral Blood	7
Comprehensive phenotyping of human platelets by single‐cell cytometry	7
Supervised machine learning in microfluidic impedance flow cytometry for improved particle size determination	7
Optical section structured illumination‐based Förster resonance energy transfer imaging	7
Comprehensive Phenotyping of Dendritic Cells in Cancer Patients by Flow Cytometry	7
Transformation of multicolour flow cytometry data with OTflow prevents misleading multivariate analysis results and incorrect immunological conclusions	7
Light scattering pattern specific convolutional network static cytometry for label‐free classification of cervical cells	7
A Joint Action in Times of Pandemic: The German BioImaging Recommendations for Operating Imaging Core Facilities During the SARS‐Cov‐2 Emergency	7
Long‐term effects of Pfizer‐BioNTech COVID‐19 vaccinations on platelets	7
Status and Potential of Single‐Cell Transcriptomics for Understanding Plant Development and Functional Biology	7
Inherent bioelectrical parameters of hundreds of thousands of single leukocytes based on impedance flow cytometry	7
Toward five‐part differential of leukocytes based on electrical impedances of single cells and neural network	6
Mesenchymal stem cell‐glioblastoma interactions mediated via kinin receptors unveiled by cytometry	6
Procedures for Flow Cytometry‐Based Sorting of Unfixed Severe Acute Respiratory Syndrome Coronavirus 2 (SARS‐CoV‐2) Infected Cells and Other Infectious Agents	6
Comprehensive phenotyping of endothelial cells using flow cytometry 1: Murine	6
Evaluating the Cytometric Detection and Enumeration of the Wine Bacterium, Oenococcus oeni	6
Development of a 27‐color panel for the detection of measurable residual disease in patients diagnosed with acute myeloid leukemia	6
Novel PE and APC tandems: Additional near‐infrared fluorochromes for use in spectral flow cytometry	6
Advance of microfluidic constriction channel system of measuring single‐cell cortical tension/specific capacitance of membrane and conductivity of cytoplasm	6
OMIP‐080: 29‐Color flow cytometry panel for comprehensive evaluation of NK and T cells reconstitution after hematopoietic stem cells transplantation	6
Simultaneous analysis of antigen‐specific B and T cells after SARS‐CoV‐2 infection and vaccination	6
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High‐content video flow cytometry with digital cell filtering for label‐free cell classification by machine learning	6
OMIP‐93: A 41‐color high parameter panel to characterize various co‐inhibitory molecules and their ligands in the lymphoid and myeloid compartment in mice	6
Mass‐tag barcoding for multiplexed analysis of human synaptosomes and other anuclear events	6
Kinetics of activation marker expression after in vitro polyclonal stimulation of chicken peripheral T cells	6
How to Prevent yourself from Seeing Double	6
Biosafety during a pandemic: shared resource laboratories rise to the challenge	5
Sperm‐cell DNA fragmentation prediction using label‐free quantitative phase imaging and deep learning	5
Quantification of Light Scattering Detection Efficiency and Background in Flow Cytometry	5
Intelligent image‐activated sorting of Chlamydomonas reinhardtii by mitochondrial localization	5
OMIP‐086: Full spectrum flow cytometry for high‐dimensional immunophenotyping of mouse innate lymphoid cells	5
Inherent single‐cell bioelectrical parameters of thousands of neutrophils, eosinophils and basophils derived from impedance flow cytometry	5
Real‐time monitoring of single circulating tumor cells with a fluorescently labeled deoxy‐glucose by in vivo flow cytometry	5
Classification of tumor subtypes leveraging constriction‐channel based impedance flow cytometry and optical imaging	5
Addressing HIV‐1 latency with Flow‐FISH: Finding, characterizing and targeting HIV‐1 infected cells	5
In situ imaging for tumor microbiome interactions via imaging mass cytometry on single‐cell level	5
Fast whole‐body motor neuron calcium imaging of freely moving Caenorhabditis elegans without coverslip pressed	5
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Identification of rare cell populations in autofluorescence lifetime image data	5
Reliable identification and quantification of neural cells in microscopic images of neurospheres	5
An efficient and cost‐effective method for the purification of human basophils	5
Celebrating 10 Years of OMIPs	5
OMIP 076: High‐dimensional immunophenotyping of murine T‐cell, B‐cell, and antibody secreting cell subsets	5
Using Cytometry for Investigation of Purinergic Signaling in Tumor‐Associated Macrophages	5
Measuring calibration factors by imaging a dish of cells expressing different tandem constructs plasmids	5
OMIP‐070: NKp46‐Based 27‐Color Phenotyping to Define Natural Killer Cells Isolated From Human Tumor Tissues	5
Aiming to Compare Apples to Apples: Analysis of Extracellular Vesicles and Other Nanosized Particles by Flow Cytometry	5
Practical application of microsphere samples for benchmarking a quantitative phase imaging system	5

Innovative fluorescent probes for in vivo visualization of biomolecules in living Caenorhabditis elegans	5
Cells infected with human papilloma pseudovirus display nuclear reorganization and heterogenous infection kinetics	4
40 Years of My Venture with CYTOMETRY	4
Comprehensive phenotyping of human peripheral blood B lymphocytes in pathological conditions	4
Gating Harmonization Guidelines for Intracellular Cytokine Staining Validated in Second International Multiconsortia Proficiency Panel Conducted by Cancer Immunotherapy Consortium (CIC/	4
Rapid, label‐free antibiotic susceptibility determined directly from positive blood culture	4
In‐depth immunophenotyping reveals significant alteration of lymphocytes in buffalo with brucellosis	4
Investigating differences between tamoxifen resistant and sensitive breast cancer cells with flow cytometry	4
Stabilization of Human Whole Blood Samples for Multicenter and Retrospective Immunophenotyping Studies	4
Quantitative Imaging of B1 Cyclin Expression Across the Cell Cycle Using Green Fluorescent Protein Tagging and Epifluorescence	4
On Its Way to Primetime: Artificial Intelligence in Flow Cytometry Diagnostics	4
Enhanced segmentation of label‐free cells for automated migration and interaction tracking	4
The use of flow cytometry for fungal nuclear DNA quantification	4
Label‐free classification of dead and live colonic adenocarcinoma cells based on 2D light scattering and deep learning analysis	4
Imaging flow cytometry and fluorescence microscopy in assessing radiation response in lymphocytes from umbilical cord blood and cancer patients	4
Seeing the Confetti Colors in a New Light Utilizing Flow Cytometry and Imaging Flow Cytometry	4
Classification of peripheral blood neutrophils using deep learning	4
Dual DNA staining enables isolation of multiple sub‐types of post‐replicative mouse male germ cells	4
Discovering fiber type architecture over the entire muscle using data‐driven analysis	4
Expanding the use of flow cytometry in semen analysis: The rise of flow spermetry	4
Is there a Pot of Gold at the End of the Spectrum?	4
Further comments on the role of ACE‐2 positive macrophages in human lung	4
Cross‐platform immunophenotyping of human peripheral blood mononuclear cells with four high‐dimensional flow cytometry panels	4
Lymph Liquid Biopsy for Detection of Cancer Stem Cells	4
Shared Resource Laboratory Operations: Changes Made During Initial Global COVID‐19 Lockdown of 2020	4
The potential of multispectral imaging flow cytometry for environmental monitoring	4
Quantifying colocalization: The case for discarding the Manders overlap coefficient	4
Upconversion nanoparticle‐assisted single‐molecule assay for detecting circulating antigens of aggressive prostate cancer	4
Immunophenotypical profiling of myeloid neoplasms with erythroid predominance using mass cytometry (CyTOF)	4
OMIP 073: Analysis of human thymocyte development with a 14‐color flow cytometry panel	4
Translocation of chromatin proteins to nucleoli—The influence of protein dynamics on post‐fixation localization	4
Quantitative analysis of endotoxin‐induced inflammation in human lung cells by Chipcytometry	4
Rac1/pSTAT3 expression: A pharmacodynamic marker panel as a first step toward optimization of thiopurine therapy in inflammatory bowel disease patients	4
Quantum approach for nanoparticle fluorescence by sub‐ns photon detection	4
OMIP‐095: 40‐Color spectral flow cytometry delineates all major leukocyte populations in murine lymphoid tissues	4
Simple Field Storage of Fish Samples for Measurement of DNA Content by Flow Cytometry	4
I Am the Alpha and the …Gamma, and the G. Calibration of Intensity‐Based FRET Measurements	4
Detecting cells rotations for increasing the robustness of cell sizing by impedance measurements, with or without machine learning	3
Barcoding of live peripheral blood mononuclear cells to assess immune cell phenotypes using full spectrum flow cytometry	3
Recent progress in cytometric technologies and their applications in ecotoxicology and environmental risk assessment	3
Quantitative single‐cell optical technologies	3
Orchestrating multiplexity in polychromatic science through OMIPs: A decade‐old resource to empower biomedical research	3
After cyclophosphamide exposure, granulosa cells recover their anti‐müllerian hormone‐producing ability but not their numbers	3
Flow cytometric measurement of STAT5 phosphorylation in cytomegalovirus‐stimulated T cells	3
Relationship between lymphocyte subsets values andC‐reactiveprotein inCOVID‐19 patients	3
Quantitative flow cytometry leveraging droplet‐based constriction microchannels with high reliability and high sensitivity	3
Deep SED‐Net with interactive learning for multiple testicular cell types segmentation and cell composition analysis in mouse seminiferous tubules	3
Comparison of electrostatic and mechanical cell sorting with limited starting material	3
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Behold Cytometrists: One Block Is Not Enough! Cyanine‐Tandems Bind Non‐Specifically to Human Monocytes	3
OMIP 082: A 25‐color phenotyping to define human innate lymphoid cells, natural killer cells, mucosal‐associated invariant T cells, and γδ T cells from freshly isolated human intestinal tis	3
Phenotypic analysis of the pediatric immune response to SARS‐CoV‐2 by flow cytometry	3
A comprehensive assessment of four whole blood stabilizers for flow‐cytometric analysis of leukocyte populations	3
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OMIP‐94: Twenty‐four‐color (thirty‐marker) panel for deep immunophenotyping of immune cells in human peripheral blood	3
OMIP 072: A 15‐color panel for immunophenotypic identification, quantification, and characterization of leukemic stem cells in children with acute myeloid leukemia	3
Bibliometric news and more about signal transduction and disease	3
Taking molecular pathology to the next level: Whole slide multicolor confocal imaging with the Pannoramic Confocal digital pathology scanner	3
Adapting to the Coronavirus Pandemic: Building and Incorporating a Diagnostic Pipeline in a Shared Resource Laboratory	3
Phenotypic analysis of erythrocytes in sickle cell disease using imaging flow cytometry	3
Risk awareness during operation of analytical flow cytometers and implications throughout the COVID‐19 pandemic	3
Development of flow cytometry‐based assays to assess the ability of antibodies to bind to SARS‐CoV‐2‐infected and spike‐transfected cells and mediate NK cell degranulation	3
A new open‐source hardware device to measure vertical sperm motility and concentration	3
Merging and imputation of flow cytometry data: A critical assessment	3
Diffractive Beam Shaper for Multiwavelength Lasers for Flow Cytometry	3
OMIP‐090: A 20‐parameter flow cytometry panel for rapid analysis of cell diversity and homing capacity in human conventional and regulatory T cells	3
ISAC Probe Tag Dictionary: Standardized Nomenclature for Detection and Visualization Labels Used in Cytometry and Microscopy Imaging	3
Development of a novel flow cytometry method for detecting pneumococcal‐specific B cells	3
OMIP‐088: Twenty‐target imaging mass cytometry panel for major cell populations in mouse formalin fixed paraffin embedded liver	3
Pluripotent stem cells: Basic biology or else differentiations aimed at translational research and the role of flow cytometry	3
COVID‐19: Using high‐throughput flow cytometry to dissect clinical heterogeneity	3
In vitro aging of stallion spermatozoa during prolonged storage at 5°C	3
Fluorescent energy transfer causing misleading signal in multicolor flow cytometry	3
Automated fluorescence gating and size determination reduce variation in measured concentration of extracellular vesicles by flow cytometry	3