Current Proteomics

Article	Citations
S100A8 and S100A9–Critical Mediators of Inflammation in Arthritis	18
Identification of key fatty acid metabolism genes and lncRNAs in Tibial cortex transverse traction therapy for diabetic foot Ulcers	17
Exploration of atractylenolide III targeting MDM2/p53 axis in breast cancer cell progression based on network pharmacology, molecular docking and ubiquitination analysis	16
The Effect of N52R Mutation at the SPN-ARR Interface on the Conformational Dynamics of SHANK3	14
Characterization of a New Hypotensive Peptide from the Venom of Snake Bothrops jararaca (Bj)	14
Applications and challenges of tear proteomics in unveiling the molecular mechanisms and biomarkers of dry eye disease	10
Dysregulation of circadian clock genes in hepatocellular carcinoma: Development of a four-gene prognostic signature	9
StemRegenin-1 Reverses Drug Resistance of MCF-7/ADR Cells via AhR/ABC Transports and AhR/UGTs Pathways	9
Pilot Study of the Ex Vivo Blood Leukocytes’ Proteomic Response to Prednisone Stimulation in Corticosteroid-responsive Asthma	9
Emerging role of tumor associated macrophages in pan-tumor progression: Biological mechanisms to clinical application	8
LINC00839, LINC01671, AC093673 and AC008760 are Associated with the Prognosis and Immune Infiltration of Clear-cell Renal Cell Carcinoma	8
Identifying Prostaglandin D2 Synthase in Urine: A Potential Biomarker for Bladder Cancer	8
Deep Learning for the Prediction of Protein Sequence, Structure, Function, and Interaction: Applications, Challenges, and Future Directions	8
The progress and prospects of single-cell sequencing, multi-omics integration analysis, and immunotherapy targeting strategies in lung cancer research	8
Proteomic Analysis of the Molecular Mechanisms of Chlorpromazine Inhibiting Migration of Oral Squamous Cell Carcinoma	8
Bioinformatics Method Predicts Hantavirus Disrupts Vascular Permeability to Invade Cells Violently by Fibrocystin Hydrolase and PTEN/Gtpase-Like System	7
RNA Sequencing of A2780 Cells Treated with CCL2 Identified Genes Associated with A2780 Cell Growth	7
Identification of a Ubiquitination‑Related Signature for Ovarian Cancer Based on 101 Combinations of Machine Learning Methods	7
Deciphering Rab32-associated antibacterial responses: Proteomics reveals the heterogeneity of macrophage defense against bacterial pathogen infection	5
Agar-Agar Matrix-Mediated Immobilization for Enhanced Catalytic Behavior and Stability of 1,4-α-D-Glucan Glucanohydrolase Obtained from Halotolerant Micrococcus spp. K11	5
Identification of Novel Biomarkers for Post-Kasai Portoenterostomy in Biliary Atresia through Shotgun Proteomics Analysis	5
Evaluation of the Interaction between Ricin Protein and Quercetin using Different Analytical Methods	4
Proteomics and Computational Analysis of Cytosolic Proteome of a Thermoacidophilic Euryarchaeon, Picrophilus torridus	4
Circulating Exosomes Studied by Label-free Proteomics Analysis Reveal Transition Signatures from Diabetes Mellitus to Diabetic Kidney Disease	4
Proteomic analysis reveals the expression and impact of PRDX2 in ovarian cancer tissues	4

Advances in machine learning for optimizing pharmaceutical drug discovery	4
Structural Insight into Wild Type of Arginine Deiminase Protein and its Three Mutated Versions in Complex with Arginine Molecule: A Computational Approach	4
miR-124 in Neuroblastoma: Mechanistic Insights, Biomarker Potential, and Therapeutic Prospects	4
PanCanSurvPlot: A large-scale pan-cancer survival analysis web application	4
A Novel Platform for Protein Post-translational Modifications based on a High-density Antibody Array	4
In-Silico and Machine Learning-Based Evaluation of Dipeptide Inhibitors Targeting Isoleucyl-tRNA Synthetase in Dermatophytic Fungal Infection	4
Advances in the combination of immunotherapy and radiotherapy for microsatellite-stable metastatic colorectal cancer	4
In Vitro and In Silico Evaluation of Caffeic and Ferulic Acids Involvement in the Translocation of Glucose Transporter 4	3
Developing Multi-epitope Antigen Construct from Immunodominant Proteins for Serological Diagnosis of Chlamydia trachomatis: An In Silico Approach	3
Integration of Proteomic Data Obtained from the Saliva of Children with Caries through Bioinformatic Analysis	3
Analysis of Membrane Proteins of Streptomycin-Resistant Mycobacterium tuberculosis Isolates	3
NaturePred: A Tool for Revolutionizing Natural Product Classification with Artificial Intelligence	3
Identification of Novel PBP2B Protein Inhibitors against Streptococcus pneumoniae in Marine Natural Products using an In-Silico Approach	3
Comparison of Structural Stability of Monomeric and Dimeric Forms of Bovine Seminal Ribonuclease Using Molecular Dynamics Simulation	3
Proteomics and metabolomics analysis of Mongolian acupuncture therapy for type 2 diabetes mellitus with atherosclerosis	3
Two Novel Peptides from Buthotus saulcyi Scorpion Venom: Proteomic Analysis and Approaches	2
Regulation of macrophage efferocytosis and immune homeostasis by natural bioactive compounds: A novel therapeutic mechanism for rheumatic autoimmune diseases	2
Current Understanding of Dried Spots Platform for Blood Proteomics	2
Small Peptides Inhibition of SARS-CoV-2 Mpro via Computational Approaches	2
H-GWNN: A Population Graph-Based Autism Spectrum Disorders Identification Framework for Tackling Data Heterogeneity	2
Serum Proteomics Reveals Differential Proteins between Individuals with Vestibular Migraine and Healthy Subjects	2
PCM1: A Potential Prognostic Biomarker Correlated with Immune Infiltration in Lung Adenocarcinoma	2
NSUN2/FOXM1 positive feedback pathway promotes the malignant development of non-small cell lung cancer	2
Corrigendum to: Cancer Proteomics: New Horizons and Insights into Therapeutic Applications	2
Protein Profiling of Hirudo orientalis During Different Seasons for Obtaining Accurate Results in Leech Therapy	2
Targeting the unexplored 'dark proteome': Novel approaches in drug discovery	2
Applications of artificial intelligence and large language models in cancer immunotherapy	2
Immune checkpoint modulators in cancer immunotherapy from inhibition to activation	2
In silico Investigation on the Structural Insights into the Binding of Squalamine Inhibitor with Membrane-bound Α-Synuclein	2
MCM2, AURKA and MCM6: potential diagnostic biomarkers for cervical cancer	2
GRHL3 promotes tumor growth and metastasis via the TGF-β signaling pathway in human epithelial ovarian cancer	2
Proteomics Response of Photosynthetic Machinery to Abiotic Stresses: A Review	2
Interaction of C-terminal Truncated Beta-amyloid Peptides with Human Serum Albumin	1
ORF7a Palsies Macrophage to Worsen Diabetes by SMB/BPI/ABC Domains and PARP/Cap/Cyclin Enzyme System	1
The anti-aging effect and mechanism of a compound peptide on sensitive skin	1
The Use of New Omics Techniques for Natural Products to Improve Drug Efficiency and Mechanism	1
Proteomic Analysis of Tumor-specific Biomarkers in Colon Cancer	1
Molecular Docking, Pharmacophore Mapping, and Virtual Screening of Novel Glucokinase Activators as Antidiabetic Agents	1
Elucidating the therapeutic mechanisms of Angelica dahurica in knee osteoarthritis: An integrative network pharmacology and molecular docking approach	1
Integrating proteomics, metabolomics, and microbiome analysis: A comprehensive study on Hirschsprung's disease	1
Comparison of the Effects of Different Coating Matrices on Cell Binding and Nitric Oxide-mediated Protein S-nitrosylation in Endothelial Cells under Shear Flow	1
Identification of Human Protein Subcellular Location with Multiple Networks	1
SP1-mediated WTAP exacerbates the progression of colon adenocarcinoma by m6A methylation of KLK8	1
Identification of Disease-Protein Associations from a Heterogeneous Network Using Graph Embedding and Sample Screening Algorithms	1
Identification of ferroptosis-related biomarker in breast cancer and analysis of its role in breast cancer progression	1
Study on the Role of Human Gut Microbiome in Controlling MRSA-Induced Sepsis Using Proteomics Tool	1
Label-free and TMT-labeled Proteomics Methods to Compare Differences on Normal and Attached Livers of Glyptosternum maculatum	1
Isolupalbigenin as a multi-target natural scaffold targeting HER2, EGFR, IGF-1R, and BCL-2 in breast cancer: An integrated docking, molecular dynamics, and DFT study	1
Immune biomarkers as key targets in managing tuberculosis: A systematic review	1
A robust gene model developed based on the features of ADME genes for predicting lung adenocarcinoma prognosis	1

A Complete Sojourn of Monoclonal Antibodies: AI, Rare Diseases / Disorders and Immunotoxic Effects	1
Integrated network pharmacology, behavior assessment, and bioinformatics to reveal the neuroprotective effect of Buzhong Yiqi Decoction combined with Fuzi Lizhong Decoction for diarrhea-predominant ir	1
LncRNA SH3BP5-AS1 Regulates the Proliferation and Cell Cycle of Non-Small Cell Lung Cancer Cells	1
Proteome Profiling of Serum Exosomes from Newborns with Lung Injury after Perinatal Asphyxia	1
Higher Abundance of Vitronectin (S-protein) in Serum-derived Exosomes of Pulmonary and Extra-Pulmonary Tuberculosis Patients as Compared to HIV-Tuberculosis Dual-infected Patients and Healthy Humans	1
Computational Evaluation of Bioactive Compounds from Bryophyllum pinnatum as a Novel GSK3B Inhibitor in Alzheimer's Disease	0
Identification of Potential Drug Targets for Sleep Apnea Through Mendelian Randomization	0
Docking and AI-based classification cum recurrent neural network validation for predicting anti-tubercular leads against dprE-1 enzyme targeter	0
Network Pharmacology and Computational Approach to Explore the Potential Underlying Mechanism of Centella asiatica in the Treatment of Diabetes Mellitus	0
Meet the Editorial Board Member	0
The lactylation modification as a metabolic-epigenetic bridge: Research progress and prospects in renal fibrosis	0
Advances in Research on Adropin: Potential Implications for Clinical Diagnosis and Possible Treatment – A Mini-Review	0
Knockdown of miR-135a-5p Promotes Mitophagy by Regulating FoxO1/PINK1/Parkin Signaling in Hepatoma Cells Exposed to Oxidative Stress	0
Decoding disorder: Advances in predicting intrinsically disordered proteins	0
Comprehensive Analysis of Tertiary Lymphoid Structures in Pancreatic Cancer: Molecular Characteristics and Prognostic Implications	0
Decoding Glycobiomarkers in Non-Alcoholic Steatohepatitis (NASH) and Related Hepatocellular Carcinoma (HCC)	0
Integrated Analysis of the Proteome Datasets Using the Assembled Genome Sequence Provides New Insights into the Specialization of Shoots, Stolons, and Rhizomes in Bermudagrass (Cynodon dactylon L.)	0
Psoralen induces osteoblast differentiation by increasing ESR1 expression in human osteoblasts	0
Acknowledgements to Reviewers	0
Investigating the Effectiveness of Natural Analogs and Different Metabolites of Curcumin for the Inhibition of the Influenza Virus Proteins in a Simulated Environment	0
Curcumin normalizes stress–associated Annexin A1 signaling to promote neuronal survival and functional recovery after ischemic stroke	0
Spatial omics: Deciphering heterogeneity in the tumor immune microenvironment and resistance to immunotherapy	0
Determination of FGFR1 Functions in Cytarabine Treatment of Acute Myeloid Leukemia Through Bioinformatics Analysis	0
Designing a Novel Multi-epitope Peptide as a Potential Serodiagnosis Marker for the Diagnosis of Acinetobacter baumannii: An In silico Approach	0
KLF4 drives aggressive RA-FLS phenotypes via HTR2A-mediated AKT/mTOR activation	0
Procyanidin B2 attenuates hypoxia/reoxygenation injury in ovarian granulosa cells through suppression of ferroptosis via the SIRT1/Nrf2/GPX4 pathway	0
AraMultiOmics: A Platform for Generating Multi-Omics Features for Studying Symbiosis in Arabidopsis thaliana and Arbuscular Mycorrhizal Fungi	0
A research status and prospects of edible fungal-derived fibrinolytic enzymes: breakthroughs based on multi-omics and intelligent delivery technologies	0
Proteomic insights into myogenic progression in cultured muscle cells of Lates calcarifer (Bloch, 1790)	0
Computational Analysis and Inhibition Study of Carbonic Anhydrase from Azadirachta indica Leaves	0
Unraveling Major Proteins of Mycobacterium tuberculosis Envelope	0
Nanotechnology-Driven Approaches for Targeted Rectal Microbiome Modulation in Gastrointestinal Disorders	0
The expanding tool landscape of proteomics: From high-throughput quantification to intelligent data analysis	0
Methanol and Sorbitol Affect the Molecular Dynamics of Arginine Deiminase: Insights for Improving its Stability	0
Predicting the Secondary Structure of Proteins: A Deep Learning Approach	0
Compounds isolated from Rhabdophyllum arnoldianum: promising new molecules for cancer treatment through their inhibitory properties on tyrosine kinases and dihydrofolate reductase, revealed by molecul	0
Metabolomics of Meat Color: Practical Implications	0
Identification of ORM1 in acute myocardial infarction via proteomics plus machine learning and exploring its diagnostic value and function	0
The mechanism of active components of Panax japonicus in mediating the HIF-VEGF signaling pathway to promote fracture healing: An investigation utilizing serum pharmacochemistry and network pharmacolo	0
Structure-based virtual screening and molecular dynamics simulation for the identification of novel potential inhibitors for the NDM-1 of Klebsiella Pneumoniae from the marine natural products	0
Design and synthesis of heterocyclic biphenyl-resultant novel pyrazole scaffolds: In-vitro and In-silico studies for potent antimicrobial agents	0
HERC5-mediated ubiquitination of IGFBP3 drives the inflammatory response and cell apoptosis in dry eye syndrome	0
A Pan-Cancer Signature For S100A11 - Prognostic And Immunotherapeutic Value	0
In-silico Analysis of Peroxidase from Raphanus Sativus	0
Annotation-Based Study on Hypothetical Proteins in Bacteria Using Classification Features	0
METTL14 stabilizes KLF6 through m6A methylation modification, thereby exacerbating neuronal injury induced by ischemia-reperfusion	0
Meet the Editorial Board Member	0
Heavy Metal Stress Tolerance by Serratia nematodiphila sp. MB307: Insights from Mass Spectrometry-based Proteomics	0
Meet the Editorial Board Member	0
Proteome provides a full map on the physiology and mechanism of the gastrointestinal tract in humans and rodents	0
Comprehensive omics profiling in acute myeloid leukemia: From molecular landscape to clinical translation	0
An Immunoinformatic Approach to Designing a Multi-epitope Vaccine against Helicobacter pylori with the VacA Toxin and BabA Adhesion	0
An Evolutionary Attributes of OMP33-36 in Acinetobacter baumannii: In silico Based Analysis	0
Silencing of KLF9 alleviates palmitic acid-induced insulin resistance and inflammation in undifferentiated myoblasts by targeting GRB14, unveiling a pathogenic axis in Type 2 diabetic myopathy	0
Identification of Potential Necroptosis Inhibitors using Pharmacophore Model: An In-silico Approach	0
Proteomics of the Skin Secretion of Pulchrana glandulosa (Anura: Ranidae) (Boulenger, 1882), Langkawi Island, Kedah, Peninsular Malaysia	0
Predicting and Validating the Mechanism of Action of the Enema Formula in Treating Colorectal Cancer by Using Network Pharmacology, GEO, and TCGA Databases	0
Oral Lactobacillus rhamnosus Is associated with pancreatic tumor growth and reduced T-Cell infiltration in mice	0
Antioxidant defense gene expression associated with lung cancer pathology: implications for diagnostic and therapeutic targets	0
PDK4 as a potential therapeutic target for antineutrophil cytoplasmic antibody associated glomerulonephritis	0
Comparative Clinical, Proteomic, and Serologic Evaluation in Non-Hospitalized COVID-19 Patients and Healthy Individuals	0
Incretin Hormones: Mechanisms, Therapeutic Implications, and Future Directions in Glucose Regulation and Diabetes Management	0
The characterization and immunoinformatic analysis of HN and F genes from the first reported XIII.2.1 Newcastle disease virus sub-genotype in Iran	0
Identification of Potential Immunogenic Epitopes Against SARS-CoV-2 Using In-Silico Method: An Immunoinformatics Study	0
In silico design and evaluation of a multi-epitope vaccine targeting SARS-CoV-2 structural proteins	0
The evolving landscape of immunotherapy in lung cancer: From mechanism to clinical translation	0
Tenascin C: a multifaceted interplayer in the rheumatoid arthritis pathogenesis and progression - insights and implications	0
Osteoarthritis: Insights into Potential Causes and Biomarkers from Articular Fluid Metabonomics	0
Molecular Mechanisms of Antiproliferative Effects of Safranal on Cervical Cancer: Evidence from Bioinformatics Analysis	0
Machine learning-based classification of viral membrane proteins	0
Design, synthesis, and theoretical studies of sulfonylated purine derivatives as EGFR inhibitor	0
Reframing cell death: Unveiling interactions and synergistic mechanisms in tumor immunity	0
Screening of immune-related secretory proteins linking primary Sjögren’s syndrome with pulmonary arterial hypertension based on comprehensive bioinformatics analysis and machine learning	0
Etomidate alleviates PM2.5-induced cardiomyocyte injury by increasing the expression of HSCB based on transcriptome analysis	0
Exploring Phytochemical Compounds: A Computational Study for HIV-1 Reverse Transcriptase Inhibition	0
Advances in bioinformatics techniques for ophthalmic diseases	0
Acknowledgements to Reviewers	0
Elucidation of EhSec1 and Interaction with EhSyntaxin1A /1B of Entamoeba Histolytica via Docking and Molecular Simulations	0
A Multimodal artificial intelligence framework for mechanistic discovery and digital twin construction in cardiovascular medicine	0
Proteomics, Peptidomics and Transcriptomic Analysis of the Venom from the Spider Macrothele yani (Mygalomorphae: Macrothelidae)	0

Immunoprotective Potential of Adenylosuccinate Synthetase Protein (PurA) in Streptococcus equi ssp. zooepidemicus Infections	0
Leukemia stem cell differentiation in acute myeloid leukemia: Molecular mechanisms and multi-omics insights	0
The Study of Different Signal Peptides in Improvement of Recombinant Proteins Solubility in E. coli: A Review Article	0
Preface	0
Recent Trends in Machine Learning-Based Computational Biology and Digital Medicine	0
The Relationship of Transposable Elements with Non-Coding RNAs in the Emergence of Human Proteins and Peptides	0
The Efficacy and Safety Analysis of the Bendamustine, Pomalidomide, and Dexamethasone (BPD) Combination Treatment for Patients with Proteasome Inhibitor Intolerance and/or Relapsed Multiple Myeloma	0
The interplay of Drp1 post-translational modifications as a regulatory network driving mitochondrial fission in diabetic kidney disease	0
In Silico Analysis of Antarctic Rhomboid Proteases (Rho): Unveiling Protein Structure and Evolution	0
Resveratrol regulates ferroptosis and endometrial cancer progression by inhibiting CEBPA-mediated FAM83B expression	0
Integrating the summary data-based mendelian randomization and transcriptomic analysis identifies candidate genes and repositioning targets for asthma	0
Predicting Membrane Protein Types Based on Fusing Information Feature and Ensemble Machine Learning Model	0
Preface	0
Platelet activationprotects againstbacterial lung injury via the TLR4/MYD88 pathway	0
An in-silico approach for structural and functional annotation of an uncharacterized protein of human papillomavirus (HPV)	0
Synthesis, antimicrobial evaluation, and molecular docking of novel pyrene-functionalized pyrazole derivatives	0
Effects of Chronic Cold Exposure on Proteomics of Lung Tissue in Mice	0
CovidLLM: A Robust Large Language Model with Missing Value Adaptation and Multi-Objective Learning Strategy for Predicting Disease Severity and Clinical Outcomes in COVID-19 Patients	0
In silico Analysis of Maize Spermidine Synthase: Detailed Insights from Substrate Docking Studies	0
Multi-omics analysis reveals molecular characteristics and potential therapeutic targets of primary central nervous system lymphoma	0
Investigating PI3P Binding with Plasmodium Falciparum HSP70 Proteins	0
Relationship of Antiviral Proteins with Retroelements in the Brain in Pathogenesis of Neurodegenerative Diseases	0