OOIR: Observatory of International Research

Papers

(The median citation count of Biochimica et Biophysica Acta-Proteins and Proteomics is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-06-01 to 2025-06-01.)

Article	Citations
Structure of the complex of camel peptidoglycan recognition protein-S with hexanoic acid reveals novel features of the versatile ligand-binding site at the dimeric interface	78
The regulation of the thermal stability and affinity of the HSPA5 (Grp78/BiP) by clients and nucleotides is modulated by domains coupling	60
Co-chaperonin GroES subunit exchange as dependent on time, pH, protein concentration, and urea	47
Proteomics and its application in endocrine disorders	36
Current status and future prospects for ion-mobility mass spectrometry in the biopharmaceutical industry	26
Active roles of lytic polysaccharide monooxygenases in human pathogenicity	25
CDR identification, epitope mapping and binding affinity determination of novel monoclonal antibodies generated against human apolipoprotein B-100	24
Chemical proteomics approaches for protein post-translational modification studies	19
Deep learning-based method for predicting and classifying the binding affinity of protein-protein complexes	18
The oxidative nuclease activity of human cytochrome c with mutations in Ω-loop C/D	17
Beta-KTx14.3, a scorpion toxin, blocks the human potassium channel KCNQ1	17
Nitroxide spin labels and EPR spectroscopy: A powerful association for protein dynamics studies	17
Analysis of ovarian cancer cell secretome during epithelial to mesenchymal transition reveals a protein signature associated with advanced stages of ovarian tumors	17
Detection of an enzyme isomechanism by means of the kinetics of covalent inhibition	15
AP lyase activity of the human ribosomal protein uS3: The DNA cleavage sequence specificity and the location of the enzyme active center	13
An intermolecular hydrogen bonded network in the PRELID-TRIAP protein family plays a role in lipid sensing	13
Binding interactions in a kinase active site modulate background ATP hydrolysis	13
A single amino acid difference between archaeal and human type 2 methionine aminopeptidases differentiates their affinity towards ovalicin	12
Epitope mapping of SARS-CoV-2 RBDs by hydroxyl radical protein footprinting reveals the importance of including negative antibody controls	12
Editorial Board	12
Structure and functional studies of Avt1, a novel peptide from the sea anemone Aulactinia veratra	12
Seq2Enz: An application of mask BLAST methodology with a new chemical logic of amino acids for improved enzyme function prediction	12
Editorial Board	12
Uncovering the membrane-integrated SecAN protein that plays a key role in translocating nascent outer membrane proteins	11
Plumbagin accelerates serum albumin's amyloid aggregation kinetics and generates fibril polymorphism by inducing non-native β-sheet structures	11

Editorial Board	11
Modulation of the carbohydrate-binding specificity of two Xenopus proto-type galectins by site-directed mutagenesis	11
Towards low false discovery rate estimation for protein-protein interactions detected by chemical cross-linking	11
Profilings of subproteomes of lectin-binding proteins of nine Bothrops venoms reveal variability driven by different glycan types	10
Structural and biophysical characterization of the selenoprotein SelW1 from Chlamydomonas reinhardtii	10
Recent technological developments for native mass spectrometry	10
The N93D mutation of the human T-cell leukemia virus type 1 envelope glycoprotein found in symptomatic patients enhances neuropilin-1 b1 domain binding	10
Elucidation of multifunctionality and substrate specificity of human aspartate aminotransferases	10
Importance of aspartate 4 in the Mg2+ dependent regulation of Leishmania major PAS domain-containing phosphoglycerate kinase	9
Bacteriophage-encoded chaperonins stimulate prion protein fibrillation in an ATP-dependent manner	9
Citrus flavanone metabolites significantly modulate global proteomic profile in pancreatic β-cells under high-glucose-induced metabolic stress	9
Editorial Board	9
The molecular basis of the antidepressant action of the magic mushroom extract, psilocin	8
His180 in the pore-lining α4 of the Bacillus thuringiensis Cry4Aa δ-endotoxin is crucial for structural arrangements of the α4-α5 transmembrane hairpin and hence biotoxicity	8
Impaired nuclear transport induced by juvenile ALS causing P525L mutation in NLS domain of FUS: A molecular mechanistic study	8
Editorial Board	8
Distinct dynamical features of plasmodial and human HSP70-HSP110 highlight the divergence in their chaperone-assisted protein folding	8
Insights into the role of F26 residue in the FMN: ATP adenylyltransferase activity of Staphylococcus aureus FAD synthetase	7
Exploring liquid-liquid phase separation in the organisation of Golgi matrix proteins	7
AP sites in various mRNA positions cross-link to the protein uS3 in the translating mammalian ribosome	7
The effect of pH and nitrite on the haem pocket of GLB-33, a globin-coupled neuronal transmembrane receptor of Caenorhabditis elegans	7
FunPredCATH: An ensemble method for predicting protein function using CATH	7
The distinct N-terminomes of Bothrops jararaca newborn and adult venoms	7
Substitution of carbonate by non-physiological synergistic anion modulates the stability and iron release kinetics of serum transferrin	7
Propagation of conformational instability in FK506-binding protein FKBP12	6
Crystal structure of the Cys-NO modified YopH tyrosine phosphatase	6
Editorial Board	6
Editorial Board	6
Editorial Board	6
Kinetic characterization and thermostability of C. elegans cytoplasmic and mitochondrial malate dehydrogenases	6
FeoC from Klebsiella pneumoniae uses its iron sulfur cluster to regulate the GTPase activity of the ferrous iron channel	6
Corrigendum to “Mass spectrometry analysis of the oxidation states of the pro oncogenic protein anterior gradient-2 reveals covalent dimerization via an intermolecular disulphide bond” [Biochimica et	5
The “Wave” of Brazilian proteomics	5
Structure of the Borrelia burgdorferi ATP-dependent metalloprotease FtsH in its functionally relevant hexameric form	5
Editorial Board	5
Immune response pattern across the asymptomatic, symptomatic and convalescent periods of COVID-19	5
The structural basis of conserved residue variant effect on enzyme activity of UGT2B15	5
Gamma cleavage is a rate-determining step in the gamma-elimination reaction of L-methionine analogues catalyzed by methionine-gamma-lyase	5
Editorial Board	5
Structural mass spectrometry decodes domain interaction and dynamics of the full-length Human Histone Deacetylase 2	5
Deletion of the non-essential Rpb9 subunit of RNA polymerase II results in pleiotropic phenotypes in Schizosaccharomyces pombe	5
Investigation on a MMACHC mutant from cblC disease: The c.394C>T variant	5
Editorial Board	5
Editorial Board	5
Elucidating the inhibitory effects of rationally designed novel hexapeptide against hen egg white lysozyme fibrillation at acidic and physiological pH	5
The apo-acyl coenzyme A binding protein of Leishmania major forms a unique ‘AXXA’ motif mediated dimer	4
A pilot study indicating the dysregulation of the complement and coagulation cascades in treated schizophrenia and bipolar disorder patients	4
Human apo-metallothionein 1a is not a random coil: Evidence from guanidinium chloride, high temperature, and acidic pH unfolding studies	4
Editorial Board	4
Structural conservation in the glutathione binding in Sphingomonas sp. glutaredoxin Grx3 and variations for cold adaptation	4

Gp29 LysA of mycobacteriophage TM4 can hydrolyze peptidoglycan through an N-acetyl-muramoyl-L-alanine amidase activity	4
Recent advances in proteomics and its implications in pituitary endocrine disorders	4
Structural basis of nuclear transport for NEIL DNA glycosylases mediated by importin-alpha	4
The Fe and Zn cofactor dilemma	4
Biochemical and biophysical features of disease-associated tau mutants V363A and V363I	4
NDM-1 Zn1-binding residue His116 plays critical roles in antibiotic hydrolysis	4
Identification of potential pharmacological chaperones that selectively stabilize mutated Aspartoacylases in Canavan disease	4
The effect of denaturants on protein thermal stability analyzed through a theoretical model considering multiple binding sites	4
Development of β-sheet structure in Aβ aggregation intermediates diminishes exposed hydrophobic surface area and enhances proinflammatory activity	4
Editorial Board	4
Hydroxyl radical footprinting analysis of a human haptoglobin-hemoglobin complex	4
Mapping the Periostin splice isoforms in atopic dermatitis and an in vitro asthma model – A multi-platform analysis using mass spectrometry and RT-qPCR	4
A crucial residue in the hydrophobic core of the solenoid structure of leucine rich repeats	3
Understanding the mechanism of amylin aggregation: From identifying crucial segments to tracing dominant sequential events to modeling potential aggregation suppressors	3
BthTX-I, a phospholipase A2-like toxin, is inhibited by the plant cinnamic acid derivative: chlorogenic acid	3
Conformational and dynamic properties of the KH1 domain of FMRP and its fragile X syndrome linked G266E variant	3
Structural, thermodynamic and functional studies of human 71 kDa heat shock cognate protein (HSPA8/hHsc70)	3
Structural insights into the mechanism underlying the dual cofactor specificity of glyoxylate reductase from Acetobacter aceti in the β-hydroxyacid dehydrogenase family	3
Tracking heme biology with resonance Raman spectroscopy	3
HSPB1 influences mitochondrial respiration in ER-stressed beta cells	3
Mutation effects on FAS1 domain 4 based on structure and solubility	3
Classification of binding property of amyloid β to lipid membranes: Membranomic research using quartz crystal microbalance combined with the immobilization of lipid planar membranes	3
Target enzymes are stabilized by AfrLEA6 and a gain of α-helix coincides with protection by a group 3 LEA protein during incremental drying	3
Identification of the interfacial regions in misfolded transthyretin oligomers	3
Native mass spectrometry for the investigation of protein structural (dis)order	3
Enzymatic and biophysical characterization of a novel modular cellulosomal GH5 endoglucanase multifunctional from the anaerobic gut fungus Piromyces finnis	3
Editorial Board	3
Cd-induced cytosolic proteome changes in the cyanobacterium Anabaena sp. PCC7120 are mediated by LexA as one of the regulatory proteins	3
Incorporation of pyridoxal-5′-phosphate into the apoenzyme: A structural study of D-amino acid transaminase from Haliscomenobacter hydrossis	3
Electrochemical characterization of mutant forms of rubredoxin B from Mycobacterium tuberculosis	3
Intrinsic affinity of protein – ligand binding by differential scanning calorimetry	3
The regulation of RGLG2-VWA by Ca2+ ions	3
Heterotypic liquid-liquid phase separation of tau and α-synuclein: Implications for overlapping neuropathologies	3
Structural foundations of sticholysin functionality	3
Editorial Board	2
SopD from Salmonella specifically inactivates Rab8	2
Amyloid-β aggregates induced by β-cholesteryl glucose-embedded liposomes	2
Biophysical characterization of human-cell-expressed, full-length κI O18/O8, AL-09, λ6a, and Wil immunoglobulin light chains	2
Structural basis of the conformational changes in Microbacterium hydrocarbonoxydans IclR transcription factor homolog due to ligand binding	2
Modulation of α-synuclein phase separation by biomolecules	2
Structural basis for the allosteric behaviour and substrate specificity of Lactococcus lactis Prolidase	2
Polyol and sugar osmolytes stabilize the molten globule state of α-lactalbumin and inhibit amyloid fibril formation	2
Structural analysis of cysteine-free Nt.BspD6 nicking endonuclease and its functional features	2
Production of recombinant lytic polysaccharide monooxygenases and evaluation effect of its addition into Aspergillus fumigatus var. niveus cocktail for sugarcane bagasse saccharification	2
Deciphering the cleavage sites of 3C-like protease in Gammacoronaviruses and Deltacoronaviruses	2
Investigations of pH-dependent dynamic properties of OmpG-16SL, an outer membrane protein G mutant by ATR-FTIR spectroscopy	2
Characterization of E121K mutation of D-amino acid oxidase – Insights into mechanisms leading to amyotrophic lateral sclerosis	2
Probing the role of Val228 on the catalytic activity of Scytalidium catalase	2
The explorations of dynamic interactions of paxillin at the focal adhesions	2
Steady-state kinetic analysis of human cholinesterases over wide concentration ranges of competing substrates	2
Structural characterization of the type I-B CRISPR Cas7 from Thermobaculum terrenum	2
Mechanistic aspects of the transamination reactions catalyzed by D-amino acid transaminase from Haliscomenobacter hydrossis	2
Engineering of conserved residues near antibody heavy chain complementary determining region 3 (HCDR3) improves both affinity and stability	2
Assigning roles in Chlamydomonas ribosome biogenesis: The conserved factor NIP7	2
Understanding enzyme behavior in a crowded scenario through modulation in activity, conformation and dynamics	2
The anti-platelet drug ticlopidine inhibits FapC fibrillation and biofilm production: Highlighting its antibiotic activity	2
A glimpse on the architecture of hnRNP C1/C2 interaction network in cultured oligodendrocytes	2
The structural and functional consequences of melatonin and serotonin on human αB-crystallin and their dual role in the eye lens transparency	2
Tyrosine-sulfated dermatopontin shares multiple binding sites and recognition determinants on triple-helical collagens with proteins implicated in cell adhesion and collagen folding, fibrillogenesis,	2
Oligomeric state of the N-terminal domain of DnaT for replication restart in Escherichia coli	2