OOIR: Observatory of International Research

Papers

(The median citation count of Biochimica et Biophysica Acta-Proteins and Proteomics is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-04-01 to 2025-04-01.)

Article	Citations
Editorial Board	92
Editorial Board	74
SopD from Salmonella specifically inactivates Rab8	60
Structural basis for the allosteric behaviour and substrate specificity of Lactococcus lactis Prolidase	37
Proteomic analysis of amniotic fluid to identify potential targets predicting preterm delivery	35
Structural analysis of cysteine-free Nt.BspD6 nicking endonuclease and its functional features	27
Challenge to overcome current limitations of cell-penetrating peptides	23
Editorial Board	23
Editorial Board	23
The degradation of intracrystalline mollusc shell proteins: A proteomics study of Spondylus gaederopus	18
Structural and functional characterisation of Tst2, a novel TRPV1 inhibitory peptide from the Australian sea anemone Telmatactis stephensoni	18
Editorial Board	17
Editorial Board	17
Proteomics-based analysis of potential therapeutic targets in patients with peritoneal dialysis-associated peritonitis	16
Co-chaperonin GroES subunit exchange as dependent on time, pH, protein concentration, and urea	16
Distinct dynamical features of plasmodial and human HSP70-HSP110 highlight the divergence in their chaperone-assisted protein folding	13
Citrus flavanone metabolites significantly modulate global proteomic profile in pancreatic β-cells under high-glucose-induced metabolic stress	12
Proteomics and its application in endocrine disorders	12
Tyrosine-sulfated dermatopontin shares multiple binding sites and recognition determinants on triple-helical collagens with proteins implicated in cell adhesion and collagen folding, fibrillogenesis,	12
Genome-wide and structural analysis of the Myb-SHAQKYF family in Entamoeba histolytica	11
Oligomeric state of the N-terminal domain of DnaT for replication restart in Escherichia coli	10
Steady-state kinetic analysis of human cholinesterases over wide concentration ranges of competing substrates	10
Polyol and sugar osmolytes stabilize the molten globule state of α-lactalbumin and inhibit amyloid fibril formation	10
The Fe and Zn cofactor dilemma	10
The regulation of the thermal stability and affinity of the HSPA5 (Grp78/BiP) by clients and nucleotides is modulated by domains coupling	10

The explorations of dynamic interactions of paxillin at the focal adhesions	10
Structure of the complex of camel peptidoglycan recognition protein-S with hexanoic acid reveals novel features of the versatile ligand-binding site at the dimeric interface	9
Serratiopeptidase exhibits antibiofilm activity through the proteolytic function of N-terminal domain and versatile function of the C-terminal domain	9
Phosphoproteome of signaling by ErbB2 in ovarian cancer cells	9
Gp29 LysA of mycobacteriophage TM4 can hydrolyze peptidoglycan through an N-acetyl-muramoyl-L-alanine amidase activity	9
Characterization of AICAR transformylase/IMP cyclohydrolase (ATIC) bifunctional enzyme from Candidatus Liberibacer asiaticus	9
Corrigendum to “The explorations of dynamic interactions of paxillin at the focal adhesions” [Biochimica et Biophysica Acta(BBA) - Proteins and Proteomics 1870/10 (2022) 140825]	8
Assembly of Hydrophobin class I from Agaricus bisporus produced different amyloid-like fibrils	8
Importance of aspartate 4 in the Mg2+ dependent regulation of Leishmania major PAS domain-containing phosphoglycerate kinase	8
Identification of potential pharmacological chaperones that selectively stabilize mutated Aspartoacylases in Canavan disease	8
The structural and functional consequences of melatonin and serotonin on human αB-crystallin and their dual role in the eye lens transparency	8
Production of recombinant lytic polysaccharide monooxygenases and evaluation effect of its addition into Aspergillus fumigatus var. niveus cocktail for sugarcane bagasse saccharification	8
His180 in the pore-lining α4 of the Bacillus thuringiensis Cry4Aa δ-endotoxin is crucial for structural arrangements of the α4-α5 transmembrane hairpin and hence biotoxicity	8
Ndufs4 knockout mice with isolated complex I deficiency engage a futile adaptive brain response	8
Development of β-sheet structure in Aβ aggregation intermediates diminishes exposed hydrophobic surface area and enhances proinflammatory activity	7
FunPredCATH: An ensemble method for predicting protein function using CATH	7
Synovial fluid glycoproteome profiling in knee osteoarthritis: Molecular insights into type 2 diabetes-associated biomarkers and therapeutic targets	7
Antibody binding increases the flexibility of the prion protein	7
Impaired nuclear transport induced by juvenile ALS causing P525L mutation in NLS domain of FUS: A molecular mechanistic study	7
Silybins inhibit human IAPP amyloid growth and toxicity through stereospecific interactions	7
Editorial Board	7
Editorial Board	7
Biochemical and biophysical features of disease-associated tau mutants V363A and V363I	6
Editorial Board	6
Hydroxyl radical footprinting analysis of a human haptoglobin-hemoglobin complex	6
The effect of pH and nitrite on the haem pocket of GLB-33, a globin-coupled neuronal transmembrane receptor of Caenorhabditis elegans	6
The role of proton-coupled electron transfer from protein to heme in dehaloperoxidase	6
Pathological cardiac remodeling seen by the eyes of proteomics	6
Bothrops atrox venom: Biochemical properties and cellular phenotypes of three highly toxic classes of toxins	6
Editorial Board	6
Structural basis of the conformational changes in Microbacterium hydrocarbonoxydans IclR transcription factor homolog due to ligand binding	5
The molecular basis of the antidepressant action of the magic mushroom extract, psilocin	5
Current status and future prospects for ion-mobility mass spectrometry in the biopharmaceutical industry	5
The nuclear localization sequence of the epigenetic factor RYBP binds to human importin α3	5
Designer D-peptides targeting the N-terminal region of α-synuclein to prevent parkinsonian-associated fibrilization and cytotoxicity	5
NDM-1 Zn1-binding residue His116 plays critical roles in antibiotic hydrolysis	5
Determining protein–protein functional associations by functional rules based on gene ontology and KEGG pathway	5
AP sites in various mRNA positions cross-link to the protein uS3 in the translating mammalian ribosome	5
Substitution of carbonate by non-physiological synergistic anion modulates the stability and iron release kinetics of serum transferrin	5
Engineering of conserved residues near antibody heavy chain complementary determining region 3 (HCDR3) improves both affinity and stability	5
Probing the role of Val228 on the catalytic activity of Scytalidium catalase	5
A glimpse on the architecture of hnRNP C1/C2 interaction network in cultured oligodendrocytes	5
Modulation of α-synuclein phase separation by biomolecules	5
Effect of flavonoids on the destabilization of α-synuclein fibrils and their conversion to amorphous aggregate: A molecular dynamics simulation and experimental study	4
Insights into the role of F26 residue in the FMN: ATP adenylyltransferase activity of Staphylococcus aureus FAD synthetase	4
Structural conservation in the glutathione binding in Sphingomonas sp. glutaredoxin Grx3 and variations for cold adaptation	4
Elucidation of cytotoxicity of α-Synuclein fibrils on immune cells	4
Modulation of the conformation, fibrillation, and fibril morphologies of human brain α-, β-, and γ-synuclein proteins by the disaccharide chemical chaperone trehalose	4
Dissecting the structural features of β-arrestins as multifunctional proteins	4
Deep learning-based method for predicting and classifying the binding affinity of protein-protein complexes	4

Chemical proteomics approaches for protein post-translational modification studies	4
Deciphering the cleavage sites of 3C-like protease in Gammacoronaviruses and Deltacoronaviruses	4
The anti-platelet drug ticlopidine inhibits FapC fibrillation and biofilm production: Highlighting its antibiotic activity	4
Proteomic insights into protostane triterpene biosynthesis regulatory mechanism after MeJA treatment in Alisma orientale (Sam.) Juz.	4
CDR identification, epitope mapping and binding affinity determination of novel monoclonal antibodies generated against human apolipoprotein B-100	4
Active roles of lytic polysaccharide monooxygenases in human pathogenicity	4
Biophysical characterization of human-cell-expressed, full-length κI O18/O8, AL-09, λ6a, and Wil immunoglobulin light chains	4
Crystal structure and interconversion of monomers and domain-swapped dimers of the walnut tree phytocystatin	3
Investigations of pH-dependent dynamic properties of OmpG-16SL, an outer membrane protein G mutant by ATR-FTIR spectroscopy	3
New insights into short peptides derived from the collagen NC1 α1, α2, and α3 (IV) domains: An experimental and MD simulations study	3
Intrinsic affinity of protein – ligand binding by differential scanning calorimetry	3
Characterization of E121K mutation of D-amino acid oxidase – Insights into mechanisms leading to amyotrophic lateral sclerosis	3
Kinetic characterization and thermostability of C. elegans cytoplasmic and mitochondrial malate dehydrogenases	3
Amyloid-β aggregates induced by β-cholesteryl glucose-embedded liposomes	3
Protein oxidation marker, α-amino adipic acid, impairs proteome of differentiated human enterocytes: Underlying toxicological mechanisms	3
The distinct N-terminomes of Bothrops jararaca newborn and adult venoms	3
Biomolecular NMR in the AI-assisted structural biology era: Old tricks and new opportunities	3
Mapping the Periostin splice isoforms in atopic dermatitis and an in vitro asthma model – A multi-platform analysis using mass spectrometry and RT-qPCR	3
Characterisation of the forest cobra (Naja melanoleuca) venom using a multifaceted mass spectrometric-based approach	3
Nitroxide spin labels and EPR spectroscopy: A powerful association for protein dynamics studies	3
Mechanisms of DNA−protein cross-link formation and repair	3
Exploring liquid-liquid phase separation in the organisation of Golgi matrix proteins	3
Methionine gamma lyase: Structure-activity relationships and therapeutic applications	3
Editorial Board	3
Editorial Board	3
Fast photochemical oxidation of proteins coupled with mass spectrometry	3
Editorial Board	3
Crystal structure of a chitinase (RmChiA) from the thermophilic fungus Rhizomucor miehei with a real active site tunnel	3
A role of methionines in the functioning of oxidatively modified fibrinogen	3
Identification of the interfacial regions in misfolded transthyretin oligomers	2
Propagation of conformational instability in FK506-binding protein FKBP12	2
Beta-KTx14.3, a scorpion toxin, blocks the human potassium channel KCNQ1	2
Assigning roles in Chlamydomonas ribosome biogenesis: The conserved factor NIP7	2
Assessing the Martini 3 protein model: A review of its path and potential	2
Editorial Board	2
Editorial Board	2
The protease associated (PA) domain in ScpA from Streptococcus pyogenes plays a role in substrate recruitment	2
Comparison of force fields to study the zinc-finger containing protein NPL4, a target for disulfiram in cancer therapy	2
Crystallographic investigation of the ubiquinone binding site of respiratory Complex II and its inhibitors	2
Aggregation kinetics of the protein photoreceptor Vivid	2
Electrochemical characterization of mutant forms of rubredoxin B from Mycobacterium tuberculosis	2
Single-cell proteomics: A treasure trove in neurobiology	2
AP lyase activity of the human ribosomal protein uS3: The DNA cleavage sequence specificity and the location of the enzyme active center	2
The “Wave” of Brazilian proteomics	2
Understanding enzyme behavior in a crowded scenario through modulation in activity, conformation and dynamics	2
Robust assessment of sample preparation protocols for proteomics of cells and tissues	2
FeoC from Klebsiella pneumoniae uses its iron sulfur cluster to regulate the GTPase activity of the ferrous iron channel	2
Analysis of ovarian cancer cell secretome during epithelial to mesenchymal transition reveals a protein signature associated with advanced stages of ovarian tumors	2
Reactive architecture profiling with a methyl acyl phosphate electrophile	2
BthTX-I, a phospholipase A2-like toxin, is inhibited by the plant cinnamic acid derivative: chlorogenic acid	2
Phosphoproteomic response of cardiac endothelial cells to ischemia and ultrasound	2
Replacement of the essential catalytic aspartate with serine leads to an active form of copper-containing nitrite reductase from the denitrifier Sinorhizobium meliloti 2011	2
The molecular interplay between human and bacterial amyloids: Implications in neurodegenerative diseases	2
Amyloid fibril formation by αS1- and β-casein implies that fibril formation is a general property of casein proteins	2
Editorial Board	2