OOIR: Observatory of International Research

Papers

(The TQCC of Biochimica et Biophysica Acta-Proteins and Proteomics is 7. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-05-01 to 2024-05-01.)

Article	Citations
Cathepsin B in neurodegeneration of Alzheimer's disease, traumatic brain injury, and related brain disorders	91
The aging lysosome: An essential catalyst for late-onset neurodegenerative diseases	76
Challenge to overcome current limitations of cell-penetrating peptides	68
Determining protein–protein functional associations by functional rules based on gene ontology and KEGG pathway	56
Nitroxide spin labels and EPR spectroscopy: A powerful association for protein dynamics studies	52
Insights into predicting diabetic nephropathy using urinary biomarkers	44
Molecular recognition of fibroblast activation protein for diagnostic and therapeutic applications	39
A comprehensive study of construction and analysis of competitive endogenous RNA networks in lung adenocarcinoma	39
Structural and mechanistic insights into the Keap1-Nrf2 system as a route to drug discovery	37
Molecular and cellular dynamics of the 26S proteasome	33
Production, thermodynamic characterization, and fruit juice quality improvement characteristics of an Exo-polygalacturonase from Penicillium janczewskii	32
Cathepsin regulation on microglial function	32
Analysis and prediction of protein stability based on interaction network, gene ontology, and KEGG pathway enrichment scores	31
Characterization of soluble folate receptors (folate binding proteins) in humans. Biological roles and clinical potentials in infection and malignancy	31
Nucleophosmin, a multifunctional nucleolar organizer with a role in DNA repair	30
Low barrier hydrogen bonds in protein structure and function	28
d-Alanine: Distribution, origin, physiological relevance, and implications in disease	27
Understanding molecular enzymology of porphyrin-binding α + β barrel proteins - One fold, multiple functions	24
Review and comparative analysis of machine learning-based phage virion protein identification methods	24
Calpains for dummies: What you need to know about the calpain family	24
Meta-omics analysis indicates the saliva microbiome and its proteins associated with the prognosis of oral cancer patients	23
Deficit of human ornithine aminotransferase in gyrate atrophy: Molecular, cellular, and clinical aspects	22
d-serine in physiological and pathological brain aging	22
Coumarin as a structural component of substrates and probes for serine and cysteine proteases	21
Combinatorial degradomics: Precision tools to unveil proteolytic processes in biological systems	21

Advancing d-amino acid-containing peptide discovery in the metazoan	19
Dysfunctional d-aspartate metabolism in BTBR mouse model of idiopathic autism	19
Cerebrospinal fluid and serum d-serine concentrations are unaltered across the whole clinical spectrum of Alzheimer's disease	19
Solid-state vibrational circular dichroism studies on the conformation of an amino acid molecule in crystalline state	19
Proteomic advances in salivary diagnostics	19
Light spectra affect the in vitro shoot development of Cedrela fissilis Vell. (Meliaceae) by changing the protein profile and polyamine contents	17
Deep learning based prediction of species-specific protein S-glutathionylation sites	17
Utility of d-serine monitoring in kidney disease	16
Inhibition of matrix metalloproteinase expression and cellular invasion by NF-κB inhibitors of microbial origin	16
Update on relevant trypanosome peptidases: Validated targets and future challenges	16
A unifying framework for amyloid-mediated membrane damage: The lipid-chaperone hypothesis	15
Recent technological developments for native mass spectrometry	15
New insights on the influence of free d-aspartate metabolism in the mammalian brain during prenatal and postnatal life	15
Proteomics in thyroid cancer and other thyroid-related diseases: A review of the literature	14
A pilot study indicating the dysregulation of the complement and coagulation cascades in treated schizophrenia and bipolar disorder patients	13
Mass spectrometry-based proteomics analyses of post-translational modifications and proteoforms in human pituitary adenomas	13
ESAT-6 regulates autophagous response through SOD-2 and as a result induces intracellular survival of Mycobacterium bovis BCG	13
Mechanisms of DNA−protein cross-link formation and repair	13
Post-translational modifications contribute to neoepitopes in Type-1 diabetes: Challenges for inducing antigen-specific tolerance	12
Targeted inhibition of amyloidogenesis using a non-toxic, serum stable strategically designed cyclic peptide with therapeutic implications	12
Molecular simulations of proteins: From simplified physical interactions to complex biological phenomena	12
Predicting protein subcellular location with network embedding and enrichment features	12
Single-cell proteomics: A treasure trove in neurobiology	12
Silybins inhibit human IAPP amyloid growth and toxicity through stereospecific interactions	12
Separation of D-amino acid-containing peptide phenylseptin using 3,3′-phenyl-1,1′-binaphthyl-18-crown-6-ether columns	11
Ceruloplasmin and oxidative stress in severe eosinophilic asthma patients treated with Mepolizumab and Benralizumab	11
Pathological cardiac remodeling seen by the eyes of proteomics	11
Functional characterization of the different oligomeric forms of human surfactant protein SP-D	11
Tumor cell- and microenvironment-specific roles of cysteine cathepsins in mouse models of human cancers	11
Characterization of large intact protein ions by mass spectrometry: What directions should we follow?	10
Understanding enzyme behavior in a crowded scenario through modulation in activity, conformation and dynamics	10
Cone snail analogs of the pituitary hormones oxytocin/vasopressin and their carrier protein neurophysin. Proteomic and transcriptomic identification of conopressins and conophysins	10
Application of mass spectrometry based proteomics to understand diabetes: A special focus on interactomics	10
Tyr-nitration in maize CDKA;1 results in lower affinity for ATP binding	10
Modulation of α-synuclein phase separation by biomolecules	10
OMA1—An integral membrane protease?	10
Asp isomerization increases aggregation of α-crystallin and decreases its chaperone activity in human lens of various ages	10
A muscle-specific calpain, CAPN3, forms a homotrimer	10
Ubiquitin ligase Cbl-b and inhibitory Cblin peptides	10
Stage-specific protein regulation during somatic embryo development of Carica papaya L. ‘Golden’	10
Human cathepsin X/Z is a biologically active homodimer	9
Effect of active-site aromatic residues Tyr or Phe on activity and stability of glucose 6-phosphate dehydrogenase from psychrophilic Arctic bacterium Sphingomonas sp.	9
Analysis of Hashimoto's thyroiditis on fine needle aspiration samples by MALDI-Imaging	9
Conformational analysis of the riboflavin-responsive ETF:QO-p.Pro456Leu variant associated with mild multiple acyl-CoA dehydrogenase deficiency	9
Enzymatic properties and physiological function of glutamate racemase from Thermus thermophilus	9
Recent advances in proteomics and its implications in pituitary endocrine disorders	9
Thermodynamics, cooperativity and stability of the tetracycline repressor (TetR) upon tetracycline binding	8
Target enzymes are stabilized by AfrLEA6 and a gain of α-helix coincides with protection by a group 3 LEA protein during incremental drying	8
Hydroxyl radical footprinting analysis of a human haptoglobin-hemoglobin complex	8
AbsoluRATE: An in-silico method to predict the aggregation kinetics of native proteins	8

Crystallographic investigation of the ubiquinone binding site of respiratory Complex II and its inhibitors	8
Structural, thermodynamic and functional studies of human 71 kDa heat shock cognate protein (HSPA8/hHsc70)	8
Decipher the connections between proteins and phenotypes	8
Quantitative proteomics and phosphoproteomics of Trypanosoma cruzi epimastigote cell cycle	7
HSPB1 influences mitochondrial respiration in ER-stressed beta cells	7
Prediction of membrane protein types by fusing protein-protein interaction and protein sequence information	7
Current status and future prospects for ion-mobility mass spectrometry in the biopharmaceutical industry	7
Quantitative profiling of axonal guidance proteins during the differentiation of human neurospheres	7
Dual effect of 2D WS2 nanoparticles on the lysozyme conformation	7
Intrinsic affinity of protein – ligand binding by differential scanning calorimetry	7
The GLP-1 analog exendin-4 modulates HSP72 expression and ERK1/2 activity in BTC6 mouse pancreatic cells	7
Structural foundations of sticholysin functionality	7
Native mass spectrometry for the investigation of protein structural (dis)order	7
Loss of a water-mediated network results in reduced agonist affinity in a β2-adrenergic receptor clinical variant	7
Crystal structure of a chitinase (RmChiA) from the thermophilic fungus Rhizomucor miehei with a real active site tunnel	7
Nucleotide-dependent dynamics of the Dengue NS3 helicase	7