OOIR: Observatory of International Research

Papers

(The median citation count of Tree Genetics & Genomes is 1. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-04-01 to 2025-04-01.)

Article	Citations
Genomic prediction in a multi-generation Eucalyptus globulus breeding population	16
Contribution of external dispersal to pollen pool genetic diversity in a riparian population of Cercidiphyllum japonicum	16
Use of plastid genome sequences in phylogeographic studies of tree species can be misleading without comprehensive sampling of co-occurring, related species	15
Revealing local adaptation of Quercus suber L. populations under climate change through Genome Scans and Environmental Association Analysis	14
Selection of accessions of Euterpe edulis Mart. based on fruit and pulp characteristics	14
Genetic diversity and population structure in Quercus suber L. revealed by nuclear microsatellite markers and generation of a core collection	13
Comparative plastid genome analyses of Rosa: Insights into the phylogeny and gene divergence	12
Chloroplast genomes and nuclear sequences reveal the interspecific relationships of Crataegus bretschneideri C. K. Schneid. and related species in China	12
Genetic relationship and parentages of historical peaches revealed by microsatellite markers	12
Population structure and intraspecific ecological niche differentiation point to lineage divergence promoted by polyploidization in Psidium cattleyanum (Myrtaceae)	12
Diversity and structure of Coffea canephora from old seminal crops in Espírito Santo, Brazil: genetic resources for coffee breeding	11
Genome-wide association analysis and validation with KASP markers for nut and shell traits in almond (Prunus dulcis [Mill.] D.A.Webb)	11
Pollen dispersal patterns and male reproductive success based on pedigree reconstruction in a hybrid larch (Larix gmelinii var. japonica × L. kaempferi) open-pollinated seed orchard	11
Range shift and introgression of three Japanese Abies species: insights from population genetic data and species distribution modeling	10
Gene-ecological zonation and population genetic structure of Tectona grandis L.f. in India revealed by genome-wide SSR markers	10
Analysis of genetic parameters of growth and wood traits provides insight into the genetic improvement of Schima superba	9
Origin of traditional sweet chestnut (Castanea sativa Mill.) varieties from the Northwest of the Iberian Peninsula	9
The transcriptomes of healthy and bitter pit-affected ‘Honeycrisp’ fruit reveal genes associated with disorder development and progression	8
Correction to: Genome‑wide identification of NRAMP family genes in Populus trichocarpa and their roles in transport of heavy metals	8
Genetic differentiation in Khaya Ivorensis A. Chev., a threaten tree of evergreen African rainforests	8
Long-distance dispersal drives the genetic variation and historical demography of Quercus magnoliifolia and Quercus resinosa (Fagaceae) in the Mexican highlands	8
Construction of a high-density genetic linkage map and QTL analysis using an interspecific F1 population in pistachio	8
Enviromic prediction enables the characterization and mapping of Eucalyptus globulus Labill breeding zones	8
Genotyping of cacao (Theobroma cacao L.) germplasm resources with SNP markers linked to agronomic traits reveals signs of selection	7
Comparative chloroplast genomes of Prunus subgenus Cerasus (Rosaceae): insights into sequence variations and phylogenetic relationships	7

Fine mapping of the gene controlling the easy-peeling pellicle trait and development of an efficient marker-assisted selection system in Japanese chestnut (Castanea crenata Sieb. et Zucc.)	7
Genome-wide genetic diversity and IBD analysis reveals historic dissemination routes of pear in China	7
Analyses of genetic diversity and population structure in Quercus griffithii Hook. f. & Thomson ex Miq. using simple sequence repeat (SSR) markers	7
Correction to: The haplotype‑resolved reference genome of lemon (Citrus limon L. Burm f.)	7
Genetic diversity and population structure analysis reveals the unique genetic composition of South African selected macadamia accessions	7
Marker-based pedigree reconstruction reveals limited diversity within commercial Eucalyptus benthamii breeding populations in Brazil	7
Continental-wide population genetics and post-Pleistocene range expansion in field maple (Acer campestre L.), a subdominant temperate broadleaved tree species	7
Correction to: Deep plastid phylogeographic divergence of beaked hickory (Carya sinensis) calls for transboundary conservation in a biodiversity hotspot	7
Genomic diversity of major tree species in the Eurasian relict forests of northern Iran	6
Deep plastid phylogeographic divergence of beaked hickory (Carya sinensis) calls for transboundary conservation in a biodiversity hotspot	6
Comparison of selection methods for the establishment of a core collection using SSR markers for hazelnut (Corylus avellana L.) accessions from European germplasm repositories	5
Quantitative trait loci for bearing habit in a ‘Sparrow’ × ‘Schessler’ Juglans nigra mapping population	5
Application of linear mixed models for multiple harvest/site trial analyses in perennial plant breeding	5
Early-growth results within a Eucalyptus globulus breeding population suggest limited scope for selection focused on CO2 responsiveness	5
Parametric mapping of QTL for resistance to European canker in apple in ‘Aroma’ × ‘Discovery’	5
Demographic history and conservation aspects of two relict shrubs (Daphnimorpha spp., Thymelaeaceae) showing disjunct and restricted distribution in the southern part of Japan	4
Comparison of selection methods to establish a core collection of the Siberian apricot using trait and SSR data	4
Genetic diversity and population structure of Rubroshorea curtisii, a hill dipterocarp species: implications for conservation	4
The future of rubber production: a review of genetic regulation of biosynthetic pathways and genome editing technologies in natural rubber-producing plants	4
High genetic diversity but spatially restricted genetic connectivity in a tropical montane cloud forest tree (Magnolia schiedeana)	4
Genetic diversity and structure of seed pools in an old planted Pinus thunbergii population and seed collection strategy for gene preservation	4
Association genetics of wood traits in European black poplar (Populus nigra L.)	4
Genotyping-by-sequencing shows high genetic diversity in Corylus avellana germplasm resistant to eastern filbert blight	4
Developing simple DNA extraction and PCR-RFLP for MALE STERILITY 4 (MS4) gene in Cryptomeria japonica D. Don: toward an environmentally friendly protocol	4
Genetic analysis of quantitative variation in almond nut traits	4
Many candidates for a single chair: a critical review of the genetic determinant of flat fruit shape trait in peach (Prunus persica L. Batsch)	4
A high-density genetic map from a cacao F2 progeny and QTL detection for resistance to witches’ broom disease	4
Late Quaternary history of Siberian stone pine as revealed by genetic and paleoecological data	4
Genetic diversity and structure in wild and cultivated populations of an emblematic African tree species, Garcinia kola (Clusiaceae)	4
Oak genomics for nature-based solutions: shaping future forests and resilient landscapes in Canada	4
QTL analysis of crown gall disease resistance in apple: first plant R gene candidates effective against Rhizobium rhizogenes (Ti)	4
Elucidation and characterization of QTLs for Russet formation on apple fruit in ‘Honeycrisp’-derived breeding germplasm	3
Preserving genetic diversity in Pinus tabuliformis breeding population through core collection development	3
Screening clonally replicated Acacia mangium breeding populations for tolerance to Ceratocystis canker and wilt disease	3
Differential gene expression in Eucalyptus clones in response to nutrient deficiency	3
Genetic variation and origin of mountain birch on a recently colonized glacial outwash plain by Vatnajökull glacier, southeast Iceland	3
Spatial genetic structure and mating system in forest tree populations from seasonally dry tropical forests: a review	3
Genomic relationship–based genetic parameters and prospects of genomic selection for growth and wood quality traits in Eucalyptus benthamii	3
Characterising the molecular diversity of ash (Fraxinus excelsior L.) at its western marginal range in Europe — phylogeographic insights and implications for conservation in Ireland	3
Female flowers first: QTL mapping in eastern black walnut (Juglans nigra L.) identifies a dominant locus for heterodichogamy syntenic with that in Persian walnut (J. regia L.)	3
Genetic variability of the endangered tropical species Hopea ferrea laness in forests revealed by microsatellite analysis	3
Whole genome resequencing unveils population structure and wood trait associations for Indian teak germplasm	3
SNP markers associated with resistance to frosty pod and black pod rot diseases in an F1 population of Theobroma cacao L.	3
Comprehensive analysis of the SmPIN gene family in Salix matsudana: roles in growth, development, and stress adaptation	3
Low-density AgriSeq targeted genotyping-by-sequencing markers are efficient for pedigree quality control in Pinus taeda L. breeding	3
Genetic breaks caused by ancient forest fragmentation: phylogeography of Staudtia kamerunensis (Myristicaceae) reveals distinct clusters in the Congo Basin	3
Genomics and adaptation in forest ecosystems	3
Breakdown of self-incompatibility of apple (Malus × domestica Borkh.) induced by gamma-ray mutagenesis	2
A comparative analysis of differential N6-methyladenosine (m6A) modification between non-transgenic and LBD15 overexpressing Poplar 84 K plants	2
Molecular marker studies on Balanites aegyptiaca and allied species for species delimitation, identification, and authentication	2

A meta-analysis on the effects of marker coverage, status number, and size of training set on predictive accuracy and heritability estimates from genomic selection in tree breeding	2
The Barren Berry phenotype: untangling cranberry (Vaccinium macrocarpon Ait.) genetic contamination in central Wisconsin and beyond	2
QTL mapping of the narrow-branch “Pendula” phenotype in Norway spruce (Picea abies L. Karst.)	2
Prediction and mapping the productivity of eucalyptus clones with environmental covariates	2
Phenotyping and genotyping of Pistacia atlantica Desf. subsp. kurdica along an environmental gradient in the semi-arid forests of western and southern Iran	2
Comprehensive genome-wide analyses of R2R3-MYB transcription factors and tolerance to drought stress in Populus davidiana × Populus bolleana	2
Mating system and inbreeding depression in Hymenaea stigonocarpa	2
The R2R3-MYB transcription factor VcMYB4a inhibits lignin biosynthesis in blueberry (Vaccinium corymbosum)	2
Genomic selection: an effective tool for operational Eucalyptus globulus clonal selection	2
Evaluation of spatial models in the estimation of genetic parameters for incidence of frosty pod rot and production in Theobroma cacao full-sib family trials	2
Genetic diversity analysis of Chinese plum (Prunus salicina L.) based on whole-genome resequencing	2
Full-scale genetic pattern and environmental association of Actinidia chinensis populations across ten mountain systems in China, and its significance for conservation	2
Genetic diversity analysis of macadamia germplasm in China based on whole-genome resequencing	2
Insights into the evolution of the eucalypt CER1 and CER3 genes involved in the synthesis of alkane waxes	2
Re-annotation of the Liriodendron chinense genome identifies novel genes and improves genome annotation quality	2
Seed and pollen dispersal and fine-scale spatial genetic structure of a threatened tree species: Pericopsis elata (HARMS) Meeuwen (Fabaceae)	2
Genetic diversity of apple heirloom germplasm in Bosnia and Herzegovina, as revealed by SNP markers	2
Identification and dynamic expression analysis of microRNAs associated with multi-tepal formation in Magnolia polytepala	2
A genetic platform for predicting and reducing non-tenera contamination in oil palm (Elaeis guineensis) seed supply	2
Genetic mapping of two quantitative resistance loci to Venturia nashicola in an interspecific pear family	2
Breeding value predictive accuracy for scarcely recorded traits in a Eucalyptus grandis breeding population using genomic selection and data on predictor traits	1
Genome-wide SNP discovery in native American and Hungarian Robinia pseudoacacia genotypes using next-generation double-digest restriction-site-associated DNA sequencing (ddRAD-Seq)	1
Correction to: Genomic diversity of major tree species in the Eurasian relict forests of northern Iran	1
Resilient forests for the future	1
Genetic diversity, population structure, and clonal verification in South African avocado cultivars using single nucleotide polymorphism (SNP) markers	1
Additive and non-additive genetic variance in juvenile Sitka spruce (Picea sitchensis Bong. Carr)	1
Genetic insights into ecology and conservation of Pinus gerardiana (chilgoza pine) a threatened species of north western himalayas – a review	1
Strong spatial structuring of clonal genetic diversity within blackthorn (Prunus spinosa) hedgerows and woodlands	1
QTL mapping of polymethoxyflavone (PMF) accumulation in citrus	1
Genome-wide identification of rubber tree PILS auxin transporter gene families and functional characterization of HbPILS6	1
Phylogeography and phylogeny of genus Quercus L. (Fagaceae) in Turkey implied by variations of trnT(UGU)-L(UAA)-F (GAA) chloroplast DNA region	1
Genetic structure of an important widely distributed tropical forest tree, Shorea parvifolia, in Southeast Asia	1
Why some ‘inbreeder’ species among mostly outbreeders? conifer examples, a postulate, and research agenda	1
Chloroplast genome assembly and phylogenetic analysis of Pterocarpus dalbergioides Roxb., an endemic timber species	1
The domestication and breeding history of Castanea crenata Siebold et Zucc. estimated by direction of gene flow and approximate Bayesian computation	1
Simulating deployment of genetic gain in a radiata pine breeding program with genomic selection	1
Filling gaps of reference DNA barcodes in Syzygium from rainforest fragments in Sumatra	1
Comparison of chloroplast genomes of compound-leaved maples and phylogenetic inference with other Acer species	1
Organellar genome evolution in Ribes L.: hotspots of mutation, sequence transfer, codon usage, and phylogenetic context	1
Image analysis of fruit deformation and its application to breeding in Japanese pear (Pyrus pyrifolia (Burm. f.) Nakai)	1
Hybridization, spatial genetic structure and potential environmental preadaptation in Quercus robur and Quercus petraea in Germany– results from the 4th National Forest Inventory	1
Spatial genetic structure of two conifers in a highly human-modified landscape of central Mexico	1
Managing forest genetic resources for an uncertain future: findings and perspectives from an international conference	1
Path analyses define criteria that allow to reduce costs in a breeding population of cacao (Theobroma cacao L.)	1
Plastome characterization and comparative analyses of wild crabapples (Malus baccata and M. toringo): insights into infraspecific plastome variation and phylogenetic relationships	1
Estimation of genetic parameters associated with frosty pod rot (Moniliophthora roreri) and cacao production in Mexico	1
Characterization of the PbrLACS2 in pear and role in wax biosynthesis in Arabidopsis	1