Proteomics

Article	Citations
Data‐Independent Acquisition Mass Spectrometry‐Based Proteomics and Software Tools: A Glimpse in 2020	226
Comparison of Proteomic Assessment Methods in Multiple Cohort Studies	104
Deep Learning in Proteomics	86
Transcription factors: Bridge between cell signaling and gene regulation	86
Shortlisting SARS‐CoV‐2 Peptides for Targeted Studies from Experimental Data‐Dependent Acquisition Tandem Mass Spectrometry Data	55
N‐Terminomics for the Identification of In Vitro Substrates and Cleavage Site Specificity of the SARS‐CoV‐2 Main Protease	54
Omics in Systems Biology: Current Progress and Future Outlook	43
DeepRescore: Leveraging Deep Learning to Improve Peptide Identification in Immunopeptidomics	40
Understanding extracellular vesicle and nanoparticle heterogeneity: Novel methods and considerations	37
Proteomic profiling of human uterine extracellular vesicles reveal dynamic regulation of key players of embryo implantation and fertility during menstrual cycle	36
The Age of Data‐Driven Proteomics: How Machine Learning Enables Novel Workflows	35
Stability and reproducibility of proteomic profiles in epidemiological studies: comparing the Olink and SOMAscan platforms	34
Mass spectrometry‐based high‐throughput proteomics and its role in biomedical studies and systems biology	33
Bottom‐up and top‐down proteomic approaches for the identification, characterization, and quantification of the low molecular weight proteome with focus on short open reading frame‐encoded peptides	32
Quantitative Proteomic Analysis of Seminal Plasma, Sperm Membrane Proteins, and Seminal Extracellular Vesicles Suggests Vesicular Mechanisms Aid in the Removal and Addition of Proteins to the Ram Sper	32
The impact of AlphaFold Protein Structure Database on the fields of life sciences	31
Proteome characterisation of extracellular vesicles isolated from heart	31
Microproteomic sample preparation	30
Potential of deep representative learning features to interpret the sequence information in proteomics	28
Longitudinal proteomic profiling provides insights into host response and proteome dynamics in COVID‐19 progression	26
Recent advances in isobaric labeling and applications in quantitative proteomics	26
Urinary Peptides Significantly Associate with COVID‐19 Severity: Pilot Proof‐of‐Principle Data and Design of a Multicentric Diagnostic Study	26
Deadly Proteomes: A Practical Guide to Proteotranscriptomics of Animal Venoms	26
MS Imaging‐Guided Microproteomics for Spatial Omics on a Single Instrument	25
Enhanced identification of Tau acetylation and phosphorylation with an engineered aerolysin nanopore	25

Targeted liquid chromatography‐tandem mass spectrometry analysis of proteins: Basic principles, applications, and perspectives	24
Synthesizing Systems Biology Knowledge from Omics Using Genome‐Scale Models	24
Exosomes Derived from the Human Primary Colorectal Cancer Cell Line SW480 Orchestrate Fibroblast‐Led Cancer Invasion	23
Label‐free single cell proteomics utilizing ultrafast LC and MS instrumentation: A valuable complementary technique to multiplexing	22
Advances in quantitative high‐throughput phosphoproteomics with sample multiplexing	22
Protein–DNA/RNA interactions: Machine intelligence tools and approaches in the era of artificial intelligence and big data	21
Computational Analysis of Phosphoproteomics Data in Multi‐Omics Cancer Studies	21
Size‐exclusion chromatography allows the isolation of EVs from the filamentous fungal plant pathogen Fusarium oxysporum f. sp. vasinfectum (Fov)	20
Clinical applications of mass spectrometry‐based proteomics in cancer: Where are we?	20
Time Course of Changes in Sorafenib‐Treated Hepatocellular Carcinoma Cells Suggests Involvement of Phospho‐Regulated Signaling in Ferroptosis Induction	20
The Choice of HLA‐Associated Peptide Enrichment and Purification Strategy Affects Peptide Yields and Creates a Bias in Detected Sequence Repertoire	20
Untargeted Lipidomics Highlight the Depletion of Deoxyceramides during Therapy‐Induced Senescence	19
A tale of two lipids: Lipid unsaturation commands ferroptosis sensitivity	19
Proteome reprogramming of endometrial epithelial cells by human trophectodermal small extracellular vesicles reveals key insights into embryo implantation	19
Targeting peptide‐mediated interactions in omics	19
29‐Plex tandem mass tag mass spectrometry enabling accurate quantification by interference correction	18
A practical guide to interpreting and generating bottom‐up proteomics data visualizations	18
Moving Profiling Spatial Proteomics Beyond Discrete Classification	18
Dealing with missing values in proteomics data	18
Proteomics in the COVID‐19 Battlefield: First Semester Check‐Up	17
Protein‐protein interaction networks as miners of biological discovery	17
Mass spectrometry‐based proteomic platforms for better understanding of SARS‐CoV‐2 induced pathogenesis and potential diagnostic approaches	17
Proteomic and metabolomic investigation of serum lactate dehydrogenase elevation in COVID‐19 patients	16
Biomarker identification and pathway analysis of rheumatoid arthritis based on metabolomics in combination with ingenuity pathway analysis	16
Emerging Role of Mass Spectrometry‐Based Structural Proteomics in Elucidating Intrinsic Disorder in Proteins	16
Single‐Cell RNA Sequencing in Hematological Diseases	16
CD99 and polymeric immunoglobulin receptor peptides deregulation in critical COVID‐19: A potential link to molecular pathophysiology?	16
First comprehensive proteomics analysis of lysine crotonylation in leaves of peanut (Arachis hypogaea L.)	16
The clinical and mechanistic roles of bile acids in depression, Alzheimer's disease, and stroke	16
Absolute Quantification of Proteins in the Eye of Drosophila melanogaster	16
In‐depth proteomic analysis of Plasmodium berghei sporozoites using trapped ion mobility spectrometry with parallel accumulation‐serial fragmentation	16
Targeted proteomics on its way to discovery	15
Complementarity of Different SDS‐PAGE Gel Staining Methods for the Identification of Short Open Reading Frame‐Encoded Peptides	15
Pannexin‐1 channel regulates nuclear content packaging into apoptotic bodies and their size	15
Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells	15
Elucidation of the protein composition of mouse seminal vesicle fluid	14
A Comprehensive Evaluation of MS/MS Spectrum Prediction Tools for Shotgun Proteomics	14
Site‐specific glycosylation of SARS‐CoV‐2: Big challenges in mass spectrometry analysis	14
A Microfluidic Chip for Efficient Circulating Tumor Cells Enrichment, Screening, and Single‐Cell RNA Sequencing	14
Microdissection—An Essential Prerequisite for Spatial Cancer Omics	14
Metabolomic profile of combined healthy lifestyle behaviours in humans: A systematic review	13
Triton X‐114 Fractionated Subcellular Proteome of Leptospira interrogans Shows Selective Enrichment of Pathogenic and Outer Membrane Proteins in the Detergent Fraction	13
Ion mobility‐resolved phosphoproteomics with dia‐PASEF and short gradients	13
An optimized MALDI MSI protocol for spatial detection of tryptic peptides in fresh frozen prostate tissue	13
Characterization of the Myofibrillar Proteome as a Way to Better Understand Differences in Bovine Meats Having Different Ultimate pH Values	13
A Deep Learning‐Based Tumor Classifier Directly Using MS Raw Data	13
Proteomic profiling of the oncogenic septin 9 reveals isoform‐specific interactions in breast cancer cells	12
Proteomic profiling in extracellular vesicles for cancer detection and monitoring	12
Identification of spliced peptides in pancreatic islets uncovers errors leading to false assignments	12
Drug hapten‐specific T‐cell activation: Current status and unanswered questions	12

ProTrack: An Interactive Multi‐Omics Data Browser for Proteogenomic Studies	12
Fingolimod effects on the brain are mediated through biochemical modulation of bioenergetics, autophagy, and neuroinflammatory networks	12
Human myeloma cell‐ and plasma‐derived extracellular vesicles contribute to functional regulation of stromal cells	12
A simple organic solvent precipitation method to improve detection of low molecular weight proteins	12
Benchmarking accuracy and precision of intensity‐based absolute quantification of protein abundances in Saccharomyces cerevisiae	12
Lowering Sample Requirements to Study Tyrosine Kinase Signaling Using Phosphoproteomics with the TMT Calibrator Approach	12
Automation of single‐cell proteomic sample preparation	12
Single polypeptide detection using a translocon EXP2 nanopore	11
Ubiquitinomics: History, methods, and applications in basic research and drug discovery	11
Human peripheral blood mononuclear cells: A review of recent proteomic applications	11
What We See, What We Do Not See, and What We Do Not Want to See in HLA Class I Immunopeptidomes	11
Optimizing data‐independent acquisition (DIA) spectral library workflows for plasma proteomics studies	11
HLA class II immunopeptidomics reveals that co‐inherited HLA‐allotypes within an extended haplotype can improve proteome coverage for immunosurveillance	11
Global Lysine Crotonylation Profiling of Mouse Liver	11
Proteomic analysis of koala (phascolarctos cinereus) spermatozoa and prostatic bodies	11
Protein Interaction Network Biology in Neuroscience	11
A novel role for milk fat globule‐EGF factor 8 protein (MFGE8) in the mediation of mouse sperm–extracellular vesicle interactions	10
Mapping shifts in nanopore signal to changes in protein and protein‐DNA conformation	10
Toward proteome‐wide exploration of proteins in dried blood spots using liquid chromatography‐coupled mass spectrometry	10
Evaluation of four phosphopeptide enrichment strategies for mass spectrometry‐based proteomic analysis	10
A Fast and Memory‐Efficient Spectral Library Search Algorithm Using Locality‐Sensitive Hashing	10
Proteomic Characterization of the Pseudomonas sp. Strain phDV1 Response to Monocyclic Aromatic Compounds	10
Proteomics and glycoproteomics of beer and wine	10
Recent developments in data acquisition, treatment and analysis with ion mobility‐mass spectrometry for lipidomics	10
A prostate cancer tissue specific spectral library for targeted proteomic analysis	10
Optimal analytical strategies for sensitive and quantitative phosphoproteomics using TMT‐based multiplexing	10
Impact of chemically defined culture media formulations on extracellular vesicle production by amniotic epithelial cells	10
Advances in proteomics sample preparation and enrichment for phosphorylation and glycosylation analysis	10
Opportunities for pharmacoproteomics in biomarker discovery	10
High‐throughput, in‐depth and estimated absolute quantification of plasma proteome using data‐independent acquisition/mass spectrometry (“HIAP‐DIA”)	9
Proteomic profiling of impaired excitation–contraction coupling and abnormal calcium handling in muscular dystrophy	9
Leveraging transformers‐based language models in proteome bioinformatics	9
Analyzing Ribosome Remodeling in Health and Disease	9
Structure of prion β‐oligomers as determined by short‐distance crosslinking constraint‐guided discrete molecular dynamics simulations	9
O‐GlcNAcylation promotes fatty acid synthase activity under nutritional stress as a pro‐survival mechanism in cancer cells	9
Global profiling of lysine lactylation in human lungs	9
Advanced Cell Mapping Visualizations for Single Cell Functional Proteomics Enabling Patient Stratification	9
Leveraging Immonium Ions for Targeting Acyl‐Lysine Modifications in Proteomic Datasets	9
Differential ultracentrifugation enables deep plasma proteomics through enrichment of extracellular vesicles	9
The Origins of Organellar Mapping by Protein Correlation Profiling	9
Mass spectrometry detection of monkeypox virus: Comprehensive coverage for ranking the most responsive peptide markers	9
DDASSQ: An open‐source, multiple peptide sequencing strategy for label free quantification based on an OpenMS pipeline in the KNIME analytics platform	9
prPred‐DRLF: Plant R protein predictor using deep representation learning features	9
Neuronal Differentiation of LUHMES Cells Induces Substantial Changes of the Proteome	9
In Depth Quantitative Proteomic and Transcriptomic Characterization of Human Adipocyte Differentiation using the SGBS Cell Line	9
Proteome and secretome analysis of pancreatic cancer cells	8
Direct‐MS analysis of antibody‐antigen complexes	8
Global profiling of protein lysine lactylation and potential target modified protein analysis in hepatocellular carcinoma	8
The Brain Protein Atlas: A conglomerate of proteomics datasets of human neural tissue	8
Dynamic Profiling of Protein Mole Synthesis Rates during C2C12 Myoblast Differentiation	8
PathwayPCA: an R/Bioconductor Package for Pathway Based Integrative Analysis of Multi‐Omics Data	8
CLN6 deficiency causes selective changes in the lysosomal protein composition	8
Using Deep Learning to Extrapolate Protein Expression Measurements	8
Recent advances in demystifying O‐glycosylation in health and disease	8
A Time‐Resolved Cryo‐EM Study of Saccharomyces cerevisiae 80S Ribosome Protein Composition in Response to a Change in Carbon Source	8
Identifying a urinary peptidomics profile for hypertension in young adults: The African‐PREDICT study	7
Proteogenomics‐Guided Evaluation of RNA‐Seq Assembly and Protein Database Construction for Emergent Model Organisms	7
A peptidoform based proteomic strategy for studying functions of post‐translational modifications	7
A Simplified Thermal Proteome Profiling Approach to Screen Protein Targets of a Ligand	7
Cracking chromatin with proteomics: From chromatome to histone modifications	7
The mechanism of Pseudomonas aeruginosa outer membrane vesicle biogenesis determines their protein composition	7
Identification of salivary autoantibodies as biomarkers of oral cancer with immunoglobulin A enrichment combined with affinity mass spectrometry	7
Covalent Modification of Proteins by Plant‐Derived Natural Products: Proteomic Approaches and Biological Impacts	7
In‐depth analysis of proteomic and genomic fluctuations during the time course of human embryonic stem cells directed differentiation into beta cells	7
New Approaches for Absolute Quantification of Stable‐Isotope‐Labeled Peptide Standards for Targeted Proteomics Based on a UV Active Tag	7
Discovery of TBC1D7 as a Potential Driver for Melanoma Cell Invasion	7
Comparative Secretomics Gives Access to High Confident Secretome Data: Evaluation of Different Methods for the Determination of Bona Fide Secreted Proteins	7
Current noise of a protein‐selective biological nanopore	7
Parallel‐reaction monitoring revealed altered expression of a number of epitranscriptomic reader, writer, and eraser proteins accompanied with colorectal cancer metastasis	7
The utilization of the search engine, Bolt, to decrease search time and increase peptide identifications in hydroxyl radical protein footprinting‐based workflows	6
The utility of proteases in proteomics, from sequence profiling to structure and function analysis	6
Targeted Approach to Distinguish and Determine Absolute Levels of GDF8 and GDF11 in Mouse Serum	6
Oktoberfest: Open‐source spectral library generation and rescoring pipeline based on Prosit	6
BLI‐MS: Combining biolayer interferometry and mass spectrometry	6
Proteomics‐based interrogation of the kinome and its implications for precision oncology	6
Quantitative Proteomics Reveals the Effects of Resveratrol on High‐Altitude Polycythemia Treatment	6
Effects of 4‐Br‐A23187 on Bacillus subtilis cells and unilamellar vesicles reveal it to be a potent copper ionophore	6
Assessing interference in isobaric tag‐based sample multiplexing using an 18‐plex interference standard	6
ProSight Annotator: Complete control and customization of protein entries in UniProt XML files	6
Discriminating physiological from non‐physiological interfaces in structures of protein complexes: A community‐wide study	6

Spatial Characterization of the Human Centrosome Proteome Opens Up New Horizons for a Small but Versatile Organelle	6
Generating Proteomic Big Data for Precision Medicine	6
Enrichment and fragmentation approaches for enhanced detection and characterization of endogenous glycosylated neuropeptides	6
Combined Targeted Proteomics and Oxylipin Metabolomics for Monitoring of the COX‐2 Pathway	6
Computational systems approach towards phosphoproteomics and their downstream regulation	6
Comprehensive Map of the Artemisia annua Proteome and Quantification of Differential Protein Expression in Chemotypes Producing High versus Low Content of Artemisinin	6
Predicting fragment intensities and retention time of iTRAQ‐ and TMTPro‐labeled peptides with Prosit‐TMT	6
Portable mass spectrometry system: instrumentation, applications, and path to ‘omics analysis	6
Recent advances of data‐independent acquisition mass spectrometry‐based proteomics	6
Data‐independent acquisition and quantification of extracellular matrix from human lung in chronic inflammation‐associated carcinomas	6
Database search engines and target database features impinge upon the identification of post‐translationally cis‐spliced peptides in HLA class I immunopeptidomes	6
Co‐culturing multicellular tumor models: Modeling the tumor microenvironment and analysis techniques	6
Single‐molecule, hybridization‐based strategies for short nucleic acids detection and recognition with nanopores	6
Resourcing, annotating, and analysing synthetic peptides of SARS‐CoV‐2 for immunopeptidomics and other immunological studies	6
DrawAlignR: An Interactive Tool for Across Run Chromatogram Alignment Visualization	6
Distinct Metabolic Features of Pathogenic Escherichia coli and Shigella spp. Determined by Label‐Free Quantitative Proteomics	5
Know thy immune self and non‐self: Proteomics informs on the expanse of self and non‐self, and how and where they arise	5
Proteomics‐based scoring of cellular response to stimuli for improved characterization of signaling pathway activity	5
Transglutaminase‐2, RNA‐binding proteins and mitochondrial proteins selectively traffic to MDCK cell‐derived microvesicles following H‐Ras‐induced epithelial–mesenchymal transition	5
Comprehensive review of MS‐based studies on N‐glycoproteome and N‐glycome of extracellular vesicles	5
Proteomics reveals the potential mechanism of Mrps35 controlling Listeria monocytogenes intracellular proliferation in macrophages	5
Comparative proteomic analysis of three major extracellular vesicle classes secreted from human primary and metastatic colorectal cancer cells: Exosomes, microparticles, and shed midbody remnants	5
Multifunctionality and intrinsic disorder of royal jelly proteome	5
ProNetView‐ccRCC: A Web‐Based Portal to Interactively Explore Clear Cell Renal Cell Carcinoma Proteogenomics Networks	5
Large‐scale top‐down proteomics of the Arabidopsis thaliana leaf and chloroplast proteomes	5
A Comprehensive Analysis of Symmetric Arginine Dimethylation in Colorectal Cancer Tissues Using Immunoaffinity Enrichment and Mass Spectrometry	5
The use of pharmacological chaperones in rare diseases caused by reduced protein stability	5
Extracellular vesicles in the transfusion medicine field: The potential of proteomics	5
Quantitative Proteomic Analysis of Global Protein Acetylation in PRRSV‐Infected Pulmonary Alveolar Macrophages	5
An emerging field: Post‐translational modification in microbiome	5
An economic and robust TMT labeling approach for high throughput proteomic and metaproteomic analysis	5
Insights into the vision of the hadal snailfish Pseudoliparis swirei through proteomic analysis of the eye	5
JUMPptm: Integrated software for sensitive identification of post‐translational modifications and its application in Alzheimer's disease study	5
Quantitative proteomic analysis reveals altered enzyme expression profile in Zea mays roots during the early stages of colonization by Herbaspirillum seropedicae	5
In‐depth discovery of protein lactylation in hepatocellular carcinoma	5
A qualitative and quantitative analysis of the human gingival crevicular fluid proteome and metaproteome	5
Proteomic analysis of the IPF mesenchymal progenitor cell nuclear proteome identifies abnormalities in key nodal proteins that underlie their fibrogenic phenotype	5
Is DIA proteomics data FAIR? Current data sharing practices, available bioinformatics infrastructure and recommendations for the future	5
Proteomic analysis of the small extracellular vesicles and soluble secretory proteins from cachexia inducing and non‐inducing cancer cells	5
Direct identification of HLA‐presented CD8 T cell epitopes from transmitted founder HIV‐1 variants	5
In‐depth proteome of perilymph in guinea pig model	5
Progress in methodologies and quality‐control strategies in protein cross‐linking mass spectrometry	5
On possible trypsin‐induced biases in peptides analysis with aerolysin nanopore	5
Modeling protein–nucleic acid complexes with extremely large conformational changes using Flex‐LZerD	5
iBench: A ground truth approach for advanced validation of mass spectrometry identification method	5
Omics insights into extracellular vesicles in embryo implantation and their therapeutic utility	5
DNA‐Barcoded Fluorescence Microscopy for Spatial Omics	5
Data‐independent acquisition proteomics methods for analyzing post‐translational modifications	5
Molecular histoproteomy by MALDI mass spectrometry imaging to uncover markers of the impact of Nosema on Apis mellifera	5
Sometimes faster can be better: Microneedling IPG strips enables higher throughput for integrative top‐down proteomics	5
Proteomics‐driven identification of short open reading frame‐encoded peptides	5
Mouse model of Alzheimer's disease demonstrates differential effects of early disease pathology on various brain regions	5
Combining label‐free and label‐based accurate quantifications with SWATH‐MS: Comparison with SRM and PRM for the evaluation of bovine muscle type effects	5
An innovative standard for LC‐MS‐based HCP profiling and accurate quantity assessment: Application to batch consistency in viral vaccine samples	5
Proteomics in antibiotic resistance and tolerance research: Mapping the resistome and the tolerome of bacterial pathogens	5
Thiol redox proteomics: Characterization of thiol‐based post‐translational modifications	5
Assessing the activation/inhibition of tyrosine kinase‐related pathways with a newly developed platform	5
Global profiling of lysine succinylation in human lungs	5
Membrane to cytosol redistribution of αII‐spectrin drives extracellular vesicle biogenesis in malignant breast cells	4
Quantitative phosphoproteomics reveals novel roles of cAMP in plants	4
Improving the proteome coverage of Daphnia magna ‐ implications for future ecotoxicoproteomics studies	4
Exploring the role of m6A modification in cancer	4
Proteomics as a tool to decipher plant responses in arbuscular mycorrhizal interactions: a meta‐analysis	4
Systematic analysis of the ubiquitome in mouse testis	4
SWATH‐MS and MRM: Quantification of Ras‐related proteins in HIV‐1 infected and methamphetamine‐exposed human monocyte‐derived macrophages (hMDM)	4
Proteomic and phosphoproteomic landscape of salivary extracellular vesicles to assess OSCC therapeutical outcomes	4
ORS‐Pred: An optimized reduced scheme‐based identifier for antioxidant proteins	4
Proteomic analysis of Giardia lamblia and Trichomonas vaginalis flagella reveal unique post‐translational modifications in tubulin that provide clues to regulation of their motilities	4
Differentially expressed glycoproteins in pre‐ and post‐digital rectal examination urine samples for detecting aggressive prostate cancer	4
Capillary electrophoresis‐mass spectrometry for protein analyses under native conditions: Current progress and perspectives	4
Tail‐Robust Quantile Normalization	4
The utility of molecularly imprinted polymers for mass spectrometric protein and proteomics analysis	4
Proteomic analyses reveal that immune integrins are major targets for regulation by Membrane‐Associated Ring‐CH (MARCH) proteins MARCH2, 3, 4 and 9	4
Investigating Byssogenesis with Proteomic Analysis of Byssus, Foot, and Mantle in Mytilus Mussels by LC‐MS/MS	4
Probing protein nanopores with poly(ethylene glycol)s	4
Systems Biology and Multi‐Omics	4
A field guide to the proteomics of post‐translational modifications in DNA repair	4
Resolving the Interactome of the Human Macrophage Immunometabolism Regulator (MACIR) with Enhanced Membrane Protein Preparation and Affinity Proteomics	4
Proteomics evaluation of five economical commercial abundant protein depletion kits for enrichment of diseases‐specific biomarkers from blood serum	4
Advances in mass spectrometry‐based footprinting of membrane proteins	4
The Choice of HLA‐Associated Peptide Enrichment and Purification Strategy Affects Peptide Yields and Creates a Bias in Detected Sequence Repertoire	4
Protein‐enabled detection of ibuprofen and sulfamethoxazole using solid‐state nanopores	4
Mapping the interaction between eukaryotic initiation factor 4A (eIF4A) and the inhibitor hippuristanol using carbene footprinting and mass spectrometry	4
Glycoblotting enables seamless and straightforward workflow for MALDI‐TOF/MS‐based sulphoglycomics of N‐ and O‐glycans	4
Comparative Proteomic Analysis Reveals Complex Responses to Bordetella bronchiseptica Infections in the Spleen of Rabbits	4
Isobaric Tag‐Based Protein Profiling across Eight Human Cell Lines Using High‐Field Asymmetric Ion Mobility Spectrometry and Real‐Time Database Searching	4
Advances in ionisation techniques for mass spectrometry‐based omics research	4
Identification of Antiestrogen‐Bound Estrogen Receptor α Interactomes in Hormone‐Responsive Human Breast Cancer Cell Nuclei	4
Improving SWATH‐MS analysis by deep‐learning	4