Frontiers in Neuroinformatics

Article	Citations
ConGen—A Simulator-Agnostic Visual Language for Definition and Generation of Connectivity in Large and Multiscale Neural Networks	120
Multi-Dimensional Enhanced Seizure Prediction Framework Based on Graph Convolutional Network	75
Expected affine: A registration method for damaged section in serial sections electron microscopy	66
Panama: An Open-Source Educational App for Ion Channel Biophysics Simulation	62
Multi illumination color constancy based on multi-scale supervision and single-scale estimation cascade convolution neural network	50
A Simulation Toolkit for Testing the Sensitivity and Accuracy of Corticometry Pipelines	40
A Robust Modular Automated Neuroimaging Pipeline for Model Inputs to TheVirtualBrain	37
Young and Aged Neuronal Tissue Dynamics With a Simplified Neuronal Patch Cellular Automata Model	37
Improving the detection of sleep slow oscillations in electroencephalographic data	36
Gershgorin circle theorem-based feature extraction for biomedical signal analysis	35
SDA: a data-driven algorithm that detects functional states applied to the EEG of Guhyasamaja meditation	34
STEPS 4.0: Fast and memory-efficient molecular simulations of neurons at the nanoscale	31
Towards Bridging the Gap Between Computational Intelligence and Neuroscience in Brain-Computer Interfaces With a Common Description of Systems and Data	29
NNMT: Mean-Field Based Analysis Tools for Neuronal Network Models	28
Systematic bibliometric and visualized analysis of research hotspots and trends in artificial intelligence in autism spectrum disorder	28
Supervised Learning With Perceptual Similarity for Multimodal Gene Expression Registration of a Mouse Brain Atlas	27
On the Use of a Multimodal Optimizer for Fitting Neuron Models. Application to the Cerebellar Granule Cell	26
Characterizing Network Search Algorithms Developed for Dynamic Causal Modeling	26
Differential processing of intrinsic vs. extrinsic coordinates in wrist movement: connectivity and chronometry perspectives	25
Intradialytic hypotension prediction using covariance matrix-driven whale optimizer with orthogonal structure-assisted extreme learning machine	24
The classification of absence seizures using power-to-power cross-frequency coupling analysis with a deep learning network	23
Contrastive self-supervised learning for neurodegenerative disorder classification	22
Editorial: Innovative methods for sleep staging using neuroinformatics	21
PymoNNto: A Flexible Modular Toolbox for Designing Brain-Inspired Neural Networks	21
DarkASDNet: Classification of ASD on Functional MRI Using Deep Neural Network	20

The Multicentre Acute ischemic stroke imaGIng and Clinical data (MAGIC) repository: rationale and blueprint	19
Editorial: Neuromodulation using spatiotemporally complex patterns	18
Interpretable evaluation for the Brunnstrom recovery stage of the lower limb based on wearable sensors	18
Harmonizing AI governance regulations and neuroinformatics: perspectives on privacy and data sharing	17
Quantifying evoked responses through information-theoretical measures	17
hvEEGNet: a novel deep learning model for high-fidelity EEG reconstruction	16
Editorial: Emerging trends in large-scale data analysis for neuroscience research	16
Intra-V1 functional networks and classification of observed stimuli	15
The quest to share data	15
Feature Selection Techniques for a Machine Learning Model to Detect Autonomic Dysreflexia	14
Cooperation objective evaluation in aviation: validation and comparison of two novel approaches in simulated environment	14
Machine learning reveals interhemispheric somatosensory coherence as indicator of anesthetic depth	13
CoBeL-RL: A neuroscience-oriented simulation framework for complex behavior and learning	13
Classification of partial seizures based on functional connectivity: A MEG study with support vector machine	13
Statistical Analysis of Graph-Theoretic Indices to Study EEG-TMS Connectivity in Patients With Depression	13
A Validation of Supervised Deep Learning for Gait Analysis in the Cat	13
Translating single-neuron axonal reconstructions into meso-scale connectivity statistics in the mouse somatosensory thalamus	13
Enhanced brain tumor diagnosis using combined deep learning models and weight selection technique	13
NeuroDecodeR: a package for neural decoding in R	13
THINGSvision: A Python Toolbox for Streamlining the Extraction of Activations From Deep Neural Networks	13
Nonconvex Nonlocal Tucker Decomposition for 3D Medical Image Super-Resolution	12
PyGeNN: A Python Library for GPU-Enhanced Neural Networks	12
Framework for the Classification of Emotions in People With Visual Disabilities Through Brain Signals	12
A numerical population density technique for N-dimensional neuron models	12
Discovering optimal features for neuron-type identification from extracellular recordings	11
Toward learning robust contrastive embeddings for binaural sound source localization	11
Brian2CUDA: Flexible and Efficient Simulation of Spiking Neural Network Models on GPUs	11
Recognition ability of untrained neural networks to symbolic numbers	11
A multi-head self-attention deep learning approach for detection and recommendation of neuromagnetic high frequency oscillations in epilepsy	11
Synthesis of diffusion-weighted MRI scalar maps from FLAIR volumes using generative adversarial networks	11
A Quick and Easy Way to Estimate Entropy and Mutual Information for Neuroscience	10
LYNSU: automated 3D neuropil segmentation of fluorescent images for Drosophila brains	10
DR-IIXRN : Detection Algorithm of Diabetic Retinopathy Based on Deep Ensemble Learning and Attention Mechanism	10
NIDM-Terms: community-based terminology management for improved neuroimaging dataset descriptions and query	10
Interpretable machine learning comprehensive human gait deterioration analysis	10
Time-Frequency Representations of Brain Oscillations: Which One Is Better?	9
Enhanced Performance by Interpretable Low-Frequency Electroencephalogram Oscillations in the Machine Learning-Based Diagnosis of Post-traumatic Stress Disorder	9
versaFlow: a versatile pipeline for resolution adapted diffusion MRI processing and its application to studying the variability of the PRIME-DE database	9
Chronic jet lag-like conditions dysregulate molecular profiles of neurological disorders in nucleus accumbens and prefrontal cortex	9
An accessible and versatile deep learning-based sleep stage classifier	9
Brain structural alterations in young girls with Rett syndrome: A voxel-based morphometry and tract-based spatial statistics study	9
Effect of natural and synthetic noise data augmentation on physical action classification by brain–computer interface and deep learning	9
SparNet: A Convolutional Neural Network for EEG Space-Frequency Feature Learning and Depression Discrimination	9
A domain adaptation benchmark for T1-weighted brain magnetic resonance image segmentation	9
The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases	9
FN-OCT: Disease Detection Algorithm for Retinal Optical Coherence Tomography Based on a Fusion Network	9
Co-optimization Learning Network for MRI Segmentation of Ischemic Penumbra Tissues	8
Editorial: Neuroinformatics of large-scale brain modelling	8
FAIR African brain data: challenges and opportunities	8
Events in context—The HED framework for the study of brain, experience and behavior	8

Perfusion-weighted software written in Python for DSC-MRI analysis	8
Evaluation of an English language phoneme-based imagined speech brain computer interface with low-cost electroencephalography	8
M3: using mask-attention and multi-scale for multi-modal brain MRI classification	8
A Spiking Neural Network Builder for Systematic Data-to-Model Workflow	8
Mitigating Computer Limitations in Replicating Numerical Simulations of a Neural Network Model With Hodgkin-Huxley-Type Neurons	8
Functional MRI study of feedback-based reinforcement learning in depression	7
State-dependent modulation of thalamocortical oscillations by gamma light flicker with different frequencies, intensities, and duty cycles	7
PyDapsys: an open-source library for accessing electrophysiology data recorded with DAPSYS	7
Explainable deep-learning framework: decoding brain states and prediction of individual performance in false-belief task at early childhood stage	7
Corrigendum: Learning the heterogeneous representation of brain's structure from serial SEM images using a masked autoencoder	7
Investigating cortical complexity and connectivity in rats with schizophrenia	7
Deep Neuro-Vision Embedded Architecture for Safety Assessment in Perceptive Advanced Driver Assistance Systems: The Pedestrian Tracking System Use-Case	7
AngoraPy: A Python toolkit for modeling anthropomorphic goal-driven sensorimotor systems	7
Editorial: Weakly supervised deep learning-based methods for brain image analysis	7
Single Image-Based Vignetting Correction for Improving the Consistency of Neural Activity Analysis in 2-Photon Functional Microscopy	7
A generalized deep learning network for fractional anisotropy reconstruction: Application to epilepsy and multiple sclerosis	7
Mapping and Validating a Point Neuron Model on Intel's Neuromorphic Hardware Loihi	7
Mapping and Validating a Point Neuron Model on Intel's Neuromorphic Hardware Loihi	7
Brain-Computer Interface using neural network and temporal-spectral features	7
Dynamic topological data analysis: a novel fractal dimension-based testing framework with application to brain signals	7
Systems Neuroscience Computing in Python (SyNCoPy): a python package for large-scale analysis of electrophysiological data	7
Power spectral analysis of voltage-gated channels in neurons	7
Neuromorphic-P2M: processing-in-pixel-in-memory paradigm for neuromorphic image sensors	6
A System-on-Chip Based Hybrid Neuromorphic Compute Node Architecture for Reproducible Hyper-Real-Time Simulations of Spiking Neural Networks	6
Enhanced heart sound anomaly detection via WCOS: a semi-supervised framework integrating wavelet, autoencoder and SVM	6
Detection of pulmonary embolism severity using clinical characteristics, hematological indices, and machine learning techniques	6
Modeling the Sequential Pattern Variability of the Electromotor Command System of Pulse Electric Fish	6
An enhanced ant colony optimizer with Cauchy-Gaussian fusion and novel movement strategy for multi-threshold COVID-19 X-ray image segmentation	6
Large-scale biophysically detailed model of somatosensory thalamocortical circuits in NetPyNE	6
Decision trees to evaluate the risk of developing multiple sclerosis	6
Quantitative evaluation method of stroke association based on multidimensional gait parameters by using machine learning	6
Editorial: Bio-Inspired Physiological Signal(s) and Medical Image(s) Neural Processing Systems Based on Deep Learning and Mathematical Modeling for Implementing Bio-Engineering Applications in Medical	6
A computational model to simulate spectral modulation and speech perception experiments of cochlear implant users	6
A computational model of Alzheimer's disease at the nano, micro, and macroscales	6
Corrigendum: Functional MRI study of feedback-based reinforcement learning in depression	6
Magnetic Resonance Imaging Sequence Identification Using a Metadata Learning Approach	6
Comparing feature selection and machine learning approaches for predicting CYP2D6 methylation from genetic variation	5
Modeling Brain Volume Using Deep Learning-Based Physical Activity Features in Patients With Dementia	5
Arpra: An Arbitrary Precision Range Analysis Library	5
Enabling uncertainty estimation in neural networks through weight perturbation for improved Alzheimer's disease classification	5
Improving the brain image resolution of generalized q-sampling MRI revealed by a three-dimensional CNN-based method	5
Novel methods for elucidating modality importance in multimodal electrophysiology classifiers	5
A Toolbox and Crowdsourcing Platform for Automatic Labeling of Independent Components in Electroencephalography	5
A method for reconstruction of interpretable brain networks from transient synchronization in resting-state BOLD fluctuations	5
A Hybrid Deep Learning Method for Early and Late Mild Cognitive Impairment Diagnosis With Incomplete Multimodal Data	5
BOLD Monitoring in the Neural Simulator ANNarchy	5
Embedding Functional Brain Networks in Low Dimensional Spaces Using Manifold Learning Techniques	5
suMRak: a multi-tool solution for preclinical brain MRI data analysis	5
SNAP: a structure-based neuron morphology reconstruction automatic pruning pipeline	5
NeoRS: A Neonatal Resting State fMRI Data Preprocessing Pipeline	5
Fiber Clustering Acceleration With a Modified Kmeans++ Algorithm Using Data Parallelism	5
On the Minimal Amount of EEG Data Required for Learning Distinctive Human Features for Task-Dependent Biometric Applications	5
Auto-Selection of an Optimal Sparse Matrix Format in the Neuro-Simulator ANNarchy	5
Acceleration of the SPADE Method Using a Custom-Tailored FP-Growth Implementation	5
MIIND : A Model-Agnostic Simulator of Neural Populations	5
A standardized accelerometry method for characterizing tremor: Application and validation in an ageing population with postural and action tremor	5
Comparing the Performance of Two Radiomic Models to Predict Progression and Progression Speed of White Matter Hyperintensities	5
Browsing Multiple Subjects When the Atlas Adaptation Cannot Be Achieved via a Warping Strategy	5
The Stroke Neuro-Imaging Phenotype Repository: An Open Data Science Platform for Stroke Research	4
Modernizing the NEURON Simulator for Sustainability, Portability, and Performance	4
Parameter Estimation of Two Spiking Neuron Models With Meta-Heuristic Optimization Algorithms	4
Optimizing neuroscience data management by combining REDCap, BIDS and SQLite: a case study in Deep Brain Stimulation	4
An optimized framework for processing multicentric polysomnographic data incorporating expert human oversight	4
NIRS-ICA: A MATLAB Toolbox for Independent Component Analysis Applied in fNIRS Studies	4
Automated detection of cerebral microbleeds on MR images using knowledge distillation framework	4
Predicting the clinical prognosis of acute ischemic stroke using machine learning: an application of radiomic biomarkers on non-contrast CT after intravascular interventional treatment	4
An enhanced deep deterministic policy gradient algorithm for intelligent control of robotic arms	4
Development and Validation of a Semi-Automated, Preclinical, MRI-Template Based PET Image Data Analysis Tool for Rodents	4
Scale-free and oscillatory spectral measures of sleep stages in humans	4
Predicting in vitro single-neuron firing rates upon pharmacological perturbation using Graph Neural Networks	4
Multiple sclerosis and breast cancer risk: a meta-analysis of observational and Mendelian randomization studies	4
Automatic Diagnosis of Schizophrenia in EEG Signals Using CNN-LSTM Models	4
Viability Study of Machine Learning-Based Prediction of COVID-19 Pandemic Impact in Obsessive-Compulsive Disorder Patients	4
Harmonizing data on correlates of sleep in children within and across neurodevelopmental disorders: lessons learned from an Ontario Brain Institute cross-program collaboration	4
Few-shot EEG sleep staging based on transductive prototype optimization network	4
Transdiagnostic clustering of self-schema from self-referential judgements identifies subtypes of healthy personality and depression	4
RealNeuralNetworks.jl: An Integrated Julia Package for Skeletonization, Morphological Analysis, and Synaptic Connectivity Analysis of Terabyte-Scale 3D Neural Segmentations	4
A deep learning approach with subregion partition in MRI image analysis for metastatic brain tumor	4
EDEN: A High-Performance, General-Purpose, NeuroML-Based Neural Simulator	3
Editorial: Multi-site neuroimage analysis: Domain adaptation and batch effects	3

Efficient Simulation of 3D Reaction-Diffusion in Models of Neurons and Networks	3
Exploring EEG-based motor imagery decoding: a dual approach using spatial features and spectro-spatial Deep Learning model IFNet	3
Retraction: NeuroSuites: an online platform for running neuroscience, statistical, and machine learning tools	3
RETRACTED: NeuroSuites: An online platform for running neuroscience, statistical, and machine learning tools	3
Multiscale co-simulation design pattern for neuroscience applications	3
In silico analyses of the involvement of GPR55, CB1R and TRPV1: response to THC, contribution to temporal lobe epilepsy, structural modeling and updated evolution	3
Can micro-expressions be used as a biomarker for autism spectrum disorder?	3
Analyzing Complex Problem Solving by Dynamic Brain Networks	3
A deep learning framework for classifying microglia activation state using morphology and intrinsic fluorescence lifetime data	3
Modeling Neurodegeneration in silico With Deep Learning	3
Connectomics Annotation Metadata Standardization for Increased Accessibility and Queryability	3
Patterns of inflammation, microstructural alterations, and sodium accumulation define multiple sclerosis subtypes after 15 years from onset	3
SynCoPa: Visualizing Connectivity Paths and Synapses Over Detailed Morphologies	3
Test-retest reliability of peak location in the sensorimotor network of resting state fMRI for potential rTMS targets	3
Editorial: Reproducible analysis in neuroscience	3
A Programmable Ontology Encompassing the Functional Logic of the Drosophila Brain	3
Fireworks explosion boosted Harris Hawks optimization for numerical optimization: Case of classifying the severity of COVID-19	3
The Case for Optimized Edge-Centric Tractography at Scale	3
Building a realistic, scalable memory model with independent engrams using a homeostatic mechanism	3
Tracking axon initial segment plasticity using high-density microelectrode arrays: A computational study	3
Editorial: Navigating the landscape of FAIR data sharing and reuse: repositories, standards, and resources	3
A Modular Workflow for Performance Benchmarking of Neuronal Network Simulations	3
Finding the limits of deep learning clinical sensitivity with fractional anisotropy (FA) microstructure maps	3
Classification of ROI-based fMRI data in short-term memory tasks using discriminant analysis and neural networks	3
Deploying and Optimizing Embodied Simulations of Large-Scale Spiking Neural Networks on HPC Infrastructure	3
A Waveform-Independent Measure of Recurrent Neural Activity	3
Research on ECG signal reconstruction based on improved weighted nuclear norm minimization and approximate message passing algorithm	3
Targeted neuroplasticity in spatiotemporally patterned invasive neuromodulation therapies for improving clinical outcomes	3
Extended Invariant Information Clustering Is Effective for Leave-One-Site-Out Cross-Validation in Resting State Functional Connectivity Modeling	3
Neuroimaging article reexecution and reproduction assessment system	3
Extending and using anatomical vocabularies in the stimulating peripheral activity to relieve conditions project	2
Multi-Source Domain Adaptation Techniques for Mitigating Batch Effects: A Comparative Study	2
The image and data archive at the laboratory of neuro imaging	2
Erratum: Mapping and validating a point neuron model on Intel's neuromorphic hardware Loihi	2
Tuberculous pleural effusion prediction using ant colony optimizer with grade-based search assisted support vector machine	2
BrainQuake: An Open-Source Python Toolbox for the Stereoelectroencephalography Spatiotemporal Analysis	2
Synaptic network structure shapes cortically evoked spatio-temporal responses of STN and GPe neurons in a computational model	2
Maximum likelihood-based estimation of diffusion coefficient is quick and reliable method for analyzing estradiol actions on surface receptor movements	2
Editorial: Image and geometry analysis for brain informatics	2
Editorial: Physical neuromorphic computing and its industrial applications	2
neuPrint: An open access tool for EM connectomics	2
Domain adaptation for EEG-based, cross-subject epileptic seizure prediction	2
Comparative Study of Multi-Delay Pseudo-Continuous Arterial Spin Labeling Perfusion MRI and CT Perfusion in Ischemic Stroke Disease	2
Adaptive Multimodal Neuroimage Integration for Major Depression Disorder Detection	2
Unsupervised method for representation transfer from one brain to another	2
Identifying discriminative features of brain network for prediction of Alzheimer’s disease using graph theory and machine learning	2
Web-based processing of physiological noise in fMRI: addition of the PhysIO toolbox to CBRAIN	2
Efficient federated learning for distributed neuroimaging data	2
bSRWPSO-FKNN: A boosted PSO with fuzzy K-nearest neighbor classifier for predicting atopic dermatitis disease	2
Effects of individualized brain anatomies and EEG electrode positions on inferred activity of the primary auditory cortex	2
An Eigenvalues-Based Covariance Matrix Bootstrap Model Integrated With Support Vector Machines for Multichannel EEG Signals Analysis	2
Automatic segmentation of hemorrhagic transformation on follow-up non-contrast CT after acute ischemic stroke	2
An Evaluation of the EEG Alpha-to-Theta and Theta-to-Alpha Band Ratios as Indexes of Mental Workload	2
The EBRAINS NeuroFeatureExtract: An Online Resource for the Extraction of Neural Activity Features From Electrophysiological Data	2
TReC: Transferred ResNet and CBAM for Detecting Brain Diseases	2
Learning the heterogeneous representation of brain's structure from serial SEM images using a masked autoencoder	2
Multi-threshold image segmentation for melanoma based on Kapur’s entropy using enhanced ant colony optimization	2
Artificial intelligence role in advancement of human brain connectome studies	2
Factorized discriminant analysis for genetic signatures of neuronal phenotypes	2
Application value of a deep learning method based on a 3D V-Net convolutional neural network in the recognition and segmentation of the auditory ossicles	2
A scoping review of mathematical models covering Alzheimer's disease progression	2
Multimodal Ensemble Deep Learning to Predict Disruptive Behavior Disorders in Children	2
QuNex—An integrative platform for reproducible neuroimaging analytics	2
Epileptic seizure prediction based on EEG using pseudo-three-dimensional CNN	2