Journal of Genetics and Genomics

Article	Citations
High-quality genome of Firmiana hainanensis provides insights into the evolution of Malvaceae subfamilies and the mechanism of their wood density formation	271
Near-complete de novo genome assemblies of tomato (Solanum lycopersicum) determinate cultivars Micro-Tom and M82	246
Functional analysis of the emerging roles for the KISS1/KISS1R signaling pathway in cancer metastasis	239
Finding unknown species in the genomes of extant species	234
RCAN family member 3 deficiency contributes to noncompaction of the ventricular myocardium	229
Local trafficking and long-distance transport of small RNAs in plants	153
AMPK controls sucrose taste sensitization in Drosophila	148
The ZFP541-KCTD19 complex is essential for pachytene progression by activating meiotic genes during mouse spermatogenesis	103
Maternal genetic history of southern East Asians over the past 12,000 years	98
Single-cell transcriptome atlas of the leaf and root of rice seedlings	64
Active DNA demethylation regulates MAMP-triggered immune priming in Arabidopsis	59
Deciphering the influence of gut and oral microbiomes on menopause for healthy aging	56
Hd1, Ghd7, and DTH8 synergistically determine the rice heading date and yield-related agronomic traits	56
Gap-free genome assembly and metabolomics analysis of common bean provide insights into genomic characteristics and metabolic determinants of seed coat pigmentation	52
Ectopic expression of Myomaker and Myomixer in slow muscle cells induces slow muscle fusion and myofiber death	51
The transcription factor Sox30 is involved in Nile tilapia spermatogenesis	49
The CXCR4-CXCL12 axis promotes T cell reconstitution via efficient hematopoietic immigration	45
TMEM63B regulates postnatal development of cochlear sensory epithelia via thyroid hormone signaling	42
The composition, function, and regulation of adipose stem and progenitor cells	41
Infection of SARS-CoV-2 causes severe pathological changes in mouse testis	40
Bmelo12, an elongase of very long-chain fatty acids gene, regulates silk yield in Bombyx mori	40
Aberrant nuclear lamina contributes to the malignancy of human gliomas	39
ERVcancer: a web resource designed for querying activation of human endogenous retroviruses across major cancer types	39
Neutrophils disrupt the intestinal barrier via IL-22/TGF-β/Mmp9 axis in the zebrafish model of inflammatory bowel disease	39
Building a cattle pan-genome using more de novo assemblies	38

Ancestral genome reconstruction and the evolution of chromosomal rearrangements in Triticeae	38
Gene therapy and gene editing strategies in inherited blood disorders	37
An LRR-RLK protein modulates drought- and salt-stress responses in maize	36
The S100 calcium binding protein A11 promotes liver fibrogenesis by targeting TGF-β signaling	36
Erratum to “GenomeSyn: A bioinformatics tool for visualizing genome synteny and structural variations” [J. Genet. Genom. 49 (2022) 1174–1176]	36
Molecular cytogenetic map visualizes the heterozygotic genome and identifies translocation chromosomes in Citrus sinensis	35
OsLTP47 may function in a lipid transfer relay essential for pollen wall development in rice	31
Genetic structure and domestication footprints of the tusk, coat color, and ear morphology in East Chinese pigs	30
ccdc141 is required for left-right axis development by regulating cilia formation in the Kupffer's vesicle of zebrafish	30
Corrigendum to “AMPK controls sucrose taste sensitization in Drosophila” [Journal of Genetics and Genomics (2023) 50, 50–53]	30
3D landscape reorganization in response to feeding preferences adaptation in the youngest split Gymnocypris fish	29
NCAD v1.0: a database for non-coding variant annotation and interpretation	29
VdMKK1-mediated cell wall integrity is essential for virulence in vascular wilt pathogen Verticillium dahliae	27
Activation of γ-globin expression by a common variant disrupting IKAROS-binding motif in β-thalassemia	27
Unveiling cell-type-specific mode of evolution in comparative single-cell expression data	27
Znf706 regulates germ plasm assembly and primordial germ cell development in zebrafish	26
VSOLassoBag: a variable-selection oriented LASSO bagging algorithm for biomarker discovery in omic-based translational research	26
The genetic control of glabrous glume during African rice domestication	25
A critical evaluation of deep-learning based phylogenetic inference programs using simulated datasets	25
Capn3b-deficient zebrafish model reveals a key role of autoimmune response in LGMDR1	25
Identification of QTL-by-environment interaction by controlling polygenic background effect	25
Altered gut microbiome in FUT2 loss-of-function mutants in support of personalized medicine for inflammatory bowel diseases	25
Understanding the mechanistic regulation of ferroptosis in cancer: the gene matters	25
Natural variation of CT2 affects the embryo/kernel weight ratio in maize	24
BAP60 plays an opposite role to the MRT-NURF complex in regulating lipid droplet size	24
The Magnaporthe oryzae effector MoCHT1 targets and stabilizes rice OsLLB to suppress jasmonic acid synthesis and enhance infection	24
microRNA-2184 orchestrates Mauthner-cell axon regeneration in zebrafish via syt3 modulation	23
Variation in the promoter of OsNPF7.1 contributes to nitrate uptake, remobilization, and grain yield in upland rice	23
Transcription factors BnaC09.FUL and BnaC06.WIP2 antagonistically regulate flowering time under long-day conditions in Brassica napus	23
Coordinated regulation of cortical astrocyte maturation by OLIG1 and OLIG2 through BMP7 signaling modulation	23
Characterizing structural variants based on graph-genotyping provides insights into pig domestication and local adaption	23
Epigenetic variation in maize agronomical traits for breeding and trait improvement	22
Absence of Serpinb6a causes progressive hair cell apoptosis and hearing loss in mice	22
A human-specific cytotoxic neopeptide generated by the deafness gene Cingulin	22
Triticeae-BGC: a web-based platform for detecting, annotating and evolutionary analysis of biosynthetic gene clusters in Triticeae	22
Thyroid-stimulating hormone-thyroid hormone signaling contributes to circadian regulation through repressing clock2/npas2 in zebrafish	22
CancerSRT: a spatially resolved transcriptomics database for human cancers	22
Fli1 acts in parallel with Pu.1 to control macrophage and neutrophil fate in zebrafish	22
Nitrogen inhibition of nitrogenase activity involves the modulation of cytosolic invertase in soybean nodule	22
Single-cell RNA-Seq reveals transcriptional regulatory networks directing the development of mouse maxillary prominence	21
Two ABCI family transporters, OsABCI15 and OsABCI16, are involved in grain-filling in rice	21
CDCP: a visualization and analyzing platform for single-cell datasets	21
Sequence motifs and prediction model of GBE editing outcomes based on target library analysis and machine learning	21
Biallelic MED16 variants disrupt neural development and lead to an intellectual disability syndrome	20
Fulminant myocarditis induced by SARS-CoV-2 infection without severe lung involvement: insights into COVID-19 pathogenesis	20
Diverse functions of sex determination gene doublesex on sexually dimorphic neuronal development and behaviors	20
Stomatal maturomics: hunting genes regulating guard cell maturation and function formation from single-cell transcriptomes	20
Reconstructing cell lineage trees with genomic barcoding: approaches and applications	20
IMAGGS: a radiogenomic framework for identifying multi-way associations in breast cancer subtypes	20
Migration and proliferation of ductal cells promote pancreatic repair after trauma	20

Constructing the metabolic network of wheat kernels based on structure-guided chemical modification and multi-omics data	20
TaxonKit: A practical and efficient NCBI taxonomy toolkit	19
Genetics of anorexia nervosa: An overview of genome-wide association studies and emerging biological links	19
Homozygous nonsense variants of KCTD19 cause male infertility in humans and mice	19
Synchronized lineage tracing of cell membranes and nuclei by dual recombinases and dual fluorescent	19
A gain-of-function variant in RICTOR predisposes to human obesity	18
GRB10 regulates β-cell mass by inhibiting β-cell proliferation and stimulating β-cell dedifferentiation	18
Design strategies for enhanced sustainable green revolution productivity in rice	18
Chemical screening reveals Ronidazole is a superior prodrug to Metronidazole for nitroreductase-induced cell ablation system in zebrafish larvae	18
Phylogeny and sex chromosome evolution of Palaeognathae	18
Phenotypic advantages and improved genomic stability following selection in advanced selfing-generations of Brassica allohexaploids	18
Identification of FUT7 hypomethylation as the blood biomarker in the prediction of early-stage lung cancer	18
Both gain- and loss-of-function variants of KCNA1 are associated with paroxysmal kinesigenic dyskinesia	17
The power of “controllers”: Transposon-mediated duplicated genes evolve towards neofunctionalization	17
Mammary stem cells: molecular cues, orchestrated regulatory mechanisms and its implications in breast cancer	17
An efficient metatranscriptomic approach for capturing RNA virome and its application to SARS-CoV-2	17
Development of a haploid inducer by editing HvMTL in barley	17
Characteristics of TP53 germline variants and their correlations with Li-Fraumeni syndrome or Li-Fraumeni-like syndrome in Chinese tumor patients	17
Nitrogen assimilation in plants: current status and future prospects	17
Comparative study of gut microbiota from captive and confiscated-rescued wild pangolins	16
Mycobacterium Lrp/AsnC family transcriptional factor modulates the arginase pathway as both a sensor and a transcriptional repressor	16
AtPQT11, a P450 enzyme, detoxifies paraquat via N-demethylation	16
Ancient mitochondrial genome depicts sheep maternal dispersal and migration in Eastern Asia	16
The mechanistic insights into fruit ripening: integrating phytohormones, transcription factors, and epigenetic modification	16
Micro-coevolution of host genetics with gut microbiome in three Chinese ethnic groups	16
The HuaBiao project: whole-exome sequencing of 5000 Han Chinese individuals	16
The camphor tree genome enhances the understanding of magnoliid evolution	15
Genomic insights into the genetic diversity, lateral gaits and high-altitude adaptation of Chakouyi (CKY) horses	15
Genetic landscape of hereditary cardiomyopathies and arrhythmias in China	15
Whole-genome sequencing reveals selection signals among Chinese, Pakistani, and Nepalese goats	15
Protein post-translational modifications in auxin signaling	15
Root-derived long-distance signals trigger ABA synthesis and enhance drought resistance in Arabidopsis	15
Two diversities meet in the rhizosphere: root specialized metabolites and microbiome	15
Genetic basis of geographical differentiation, breeding selection, domestication effects, and breeding application for TaJAZ1 in wheat	14
GeMemiOM: the curated database on genes, putative methylation study targets, and microRNA targets for otitis media	14
Corrigendum to “Root-derived long-distance signals trigger ABA synthesis and enhance drought resistance in Arabidopsis” [Journal of Genetics and Genomics (2024) 51, 749–761]	14
Combining single-cell profiling and functional analysis explores the role of pseudogenes in human early embryonic development	13
OsbZIP27 coordinates with OsHUB1 and OsHUB2 to modulate drought tolerance in rice	13
Synergy of gut microbiota and host genome in driving heterosis expression of chickens	13
Understanding and enhancing rice resistance to false smut disease	13
Dosage effect genes modulate grain development in synthesized Triticum durum-Haynaldia villosa allohexaploid	13
Mesenteric lymph system constitutes the second route in gut–liver axis and transports metabolism-modulating gut microbial metabolites	13
CCDC181 is required for proper spermiogenesis in mice	13
Addition of the T5 exonuclease increases the prime editing efficiency in plants	13
Rare variants in FANCJ induce premature ovarian insufficiency in humans and mice	13
A simple and precise method (Y2H-in-frame-seq) improves yeast two-hybrid screening with cDNA libraries	12
Localized production of LECT2 by orthotopic histiocytes during inflammation	12
A hypothetical model of trans-acting R-loops-mediated promoter-enhancer interactions by Alu elements	12
S-sulfenylation-mediated inhibition of the GSNOR1 activity regulates ovule development in Arabidopsis	12
Corrigendum to “Biogenesis of autophagosomes from the ERGIC membrane system” [Journal of Genetics and Genomics (2023) 50, 3–6]	12
Genome-wide analysis of Q binding reveals a regulatory network that coordinates wheat grain yield and grain protein content	11
VT3D: a visualization toolbox for 3D transcriptomic data	11
The local density of H3K9me3 dictates the stability of HP1α condensates-mediated genomic interactions	11
Toll-9 prevents the proliferation of injected oncogenic cells in adult flies	11
Translation machinery: the basis of translational control	11
Deciphering the evolution and complexity of wheat germplasm from a genomic perspective	11
Loss of lims1 causes aberrant cardiac remodeling and heart failure via activating gp130/Jak1/Stat3 pathway in zebrafish	11
Genomic analyses reveal distinct genetic architectures and selective pressures in Chinese donkeys	11
A multi-ancestry GWAS meta-analysis of facial features and its application in predicting archaic human features	11
Microbiota-mediated shaping of mouse spleen structure and immune function characterized by scRNA-seq and Stereo-seq	11
ADGAP: A user-friendly online ancient DNA database and genome analysis platform	11
The interplay between extracellular and intracellular auxin signaling in plants	11
Current therapies for osteoarthritis and prospects of CRISPR-based genome, epigenome, and RNA editing in osteoarthritis treatment	11
DPB3 and DPB4 proteins regulate Medicago flowering and leaf anthocyanin biosynthesis	11
O-GlcNAcylation regulates phagocytosis by promoting Ezrin localization at the cell cortex	11
Epigenetic control of plant abiotic stress responses	11
Nutritional geometry framework of sucrose taste in Drosophila	11
Cdx1b protects intestinal cell fate by repressing signaling networks for liver specification	10
Ccdc57 is required for straightening the body axis by regulating ciliary motility in the brain ventricle of zebrafish	10
The rice histone methylation regulates hub species of the root microbiota	10
Long-read sequencing and de novo assembly of the cynomolgus macaque genome	10
Pathogenic TDRD12 variants cause defective piRNA pathway and male infertility in humans and mice	10
Characterization of heavy-chain antibody gene repertoires in Bactrian camels	10
COL: a method for identifying putatively functional circular RNAs	10
The shikimate pathway regulates programmed cell death	10
Polyamine oxidase 3 is involved in salt tolerance at the germination stage in rice	10
Developmental regulation of neuronal gene expression by Elongator complex protein 1 dosage	9
Wide hybridizations reveal the robustness of functional centromeres in Triticum–Aegilops species complex lines	9
Laser capture microdissection for biomedical research: towards high-throughput, multi-omics, and single-cell resolution	9
Genomic allele-specific base editing with imperfect gRNA	9

Near-gapless telomere-to-telomere reference nuclear genome and variable mitochondrial genome of Amborella trichopoda	9
New insights into the dispersion history and adaptive evolution of taxon Aegilops tauschii in China	9
Genetic and molecular mechanisms of reproductive isolation in the utilization of heterosis for breeding hybrid rice	9
TMEM39A and TMEM131 facilitate bulk transport of ECM proteins through large COPII vesicle formation	9
Identification of novel loci influencing refractive error in East Asian populations using an extreme phenotype design	9
Retina cell atlases of multiple species and an online platform for retina cell-type markers	9
Viral receptor profiles of masked palm civet revealed by single-cell transcriptomics	9
The lawc gene emerged de novo from conserved genomic elements and acquired a broad expression pattern in Drosophila	9
Two zinc-finger proteins control the initiation and elongation of long stalk trichomes in tomato	9
Phosphorylation of ATF2 promotes odontoblastic differentiation via intrinsic HAT activity	9
Overexpression of CRYPTOCHROME 2 enhances shoot growth and wood formation in poplar under growth-restrictive short days	9
Crop root system architecture in drought response	9
TabHLH95-TaNF-YB1 module promotes grain starch synthesis in bread wheat	9
Genome-wide profiling of polymorphic short tandem repeats and their influence on gene expression and trait variation in diverse rice populations	9
Harness the wild: progress and perspectives in wheat genetic improvement	9
Newborn screening with targeted sequencing: a multicenter investigation and a pilot clinical study in China	9
Emerging roles of phosphoinositide-associated membrane trafficking in plant stress responses	8
Evidence for a mouse origin of the SARS-CoV-2 Omicron variant	8
The landscape and clinical relevance of intronic polyadenylation in human cancers	8
Whole-genome sequence-based association study for immune cells in an eight-breed pig heterogeneous population	8
A tunable genome editing system of the prime editor mediated by dihydrofolate reductase	8
TAZ inhibits SCLC metastasis through GALNT18-mediated O-glycosylation	8
3vGCIM: a compressed variance component mixed model for detecting QTL-by-environment interactions in RIL population	8
Genetic evidence for facial variation being a composite phenotype of cranial variation and facial soft tissue thickness	8
Systematic identification and screening of functional long noncoding RNAs during planarian regeneration	8
Genetic variations in ZmEREB179 are associated with waterlogging tolerance in maize	8
Natural selection shaped the protective effect of the mtDNA lineage against obesity in Han Chinese populations	8
Genome engineering of the human gut microbiome	8
Natural variations in grain length 10 (GL10) regulate rice grain size	8
The HISTONE ACETYLTRANSFERASE 1 interacts with CONSTANS to promote flowering in Arabidopsis	8
Decoding transcriptional regulation via a human gene expression predictor	8
Genome-wide association analysis reveals regulatory genes for the metabolite synthesis of 2-acetyl-1-pyrroline in aromatic coconut (Cocos nucifera L.)	8
Fixation of hybrid sterility genes and favorable alleles of key yield-related genes with dominance contribute to the high yield of the Yongyou series of intersubspecific hybrid rice	8
The SNAPc complex mediates starvation-induced trans-splicing in Caenorhabditis elegans	8
Wheat TaPKL genes regulate pre-harvest sprouting and yield-related traits	7
TaNPF6.2 improves agronomic traits via enhancing nitrogen uptake efficiency in wheat	7
Nuclear encoded elongation factor EF-Tu is required for chloroplast development in rice grown under low-temperature conditions	7
Neolithic to Bronze Age human maternal genetic history in Yunnan, China	7
G-quadruplexes in genomes of viruses infecting eukaryotes or prokaryotes are under different selection pressures from hosts	7
Maternal genetic structure of a neolithic population of the Yangshao culture	7
Functionalized gadofullerene ameliorates impaired glycolipid metabolism in type 2 diabetic mice	7
High-throughput base editing KO screening of cellular factors for enhanced GBE	7
Maize plastid terminal oxidase (ZmPTOX) regulates the color formation of leaf and kernel by modulating plastid development	7
Genome-editing of a circadian clock gene TaPRR95 facilitates wheat peduncle growth and heading date	7
The m6A reader YTHDC2 maintains visual function and retinal photoreceptor survival through modulating translation of PPEF2 and PDE6B	7
Revealing extensive inbreeding and less efficient purging of deleterious mutations in wild Amur tigers in China	7
Divergent expression of Neurl3 from hemogenic endothelial cells to hematopoietic stem progenitor cells during development	7
Zfp281 is essential for epiblast maturation through a cell autonomous effect	7
Functional characterization of OsLT9 in regulating rice leaf thickness	7
Corrigendum to “Actin polymerization induces mitochondrial distribution during collective cell migration” [Journal of Genetics and Genomics (2023) 50 46–49]	7
The OsCLV2s-OsCRN1 co-receptor regulates grain shape in rice	7
Rab1 and Syntaxin 17 regulate hematopoietic homeostasis through β-integrin trafficking in Drosophila	7
Improved in situ sequencing for high-resolution targeted spatial transcriptomic analysis in tissue sections	7
m6A-modified RNAs possess distinct poly(A) tails	7
Delta.EPI: a probabilistic voting-based enhancer–promoter interaction prediction platform	7
The phospholipid scramblase PLSCR5 is regulated by POU4F3 and required for hair cell stereocilia homeostasis and auditory functions	7
Assessing the efficacy and safety of gemcitabine-induced thrombocytopenia/neutropenia and thrombocytopenia interventions in zebrafish	7
CircPTEN-MT from PTEN regulates mitochondrial energy metabolism	7
Variants in the Wnt co-receptor LRP6 are associated with familial exudative vitreoretinopathy	7
TMEM181: a key mediator of cytolethal distending toxin required for Wnt signaling activity	7
Corrigendum to “Absence of Serpinb6a causes progressive hair cell apoptosis and hearing loss in mice” [Journal of Genetics and Genomics (2023) 50, 122–125]	7
Differential regulation of JAK1 expression by ETS1 associated with predisposition to primary biliary cholangitis	6
PPR21 is involved in the splicing of nad2 introns via interacting with PPR-SMR1 and SPR2 and is essential to maize seed development	6
Recombination and repeat-induced point mutation landscapes reveal trade-offs between the sexual and asexual cycles of Magnaporthe oryzae	6
eQTL studies: from bulk tissues to single cells	6
Tongue-coating microbiome reflects cardiovascular health and determines outcome in blood pressure intervention	6
The CCT transcriptional activator Ghd2 constantly delays the heading date by upregulating CO3 in rice	6
A rare KLHDC4 variant Glu510Lys is associated with genetic susceptibility and promotes tumor metastasis in nasopharyngeal carcinoma	6
A novel PCYT2 mutation identified in a Chinese consanguineous family with hereditary spastic paraplegia	6
Nitric oxide negatively regulates gibberellin signaling to coordinate growth and salt tolerance in Arabidopsis	6
Chromosome-scale genomes of Quercus sichourensis and Quercus rex provide insights into the evolution and adaptation of Fagaceae	6
Two imprinted genes primed by DEMETER in the central cell and activated by WRKY10 in the endosperm	6
Xgr is involved in body size control in Drosophila through promoting glucose uptake in the Malpighian tubules	6
OsMPK4 promotes phosphorylation and degradation of IPA1 in response to salt stress to confer salt tolerance in rice	6
Single-cell transcriptomics reveals cell type diversity of human prostate	6
bmp10 maintains cardiac function by regulating iron homeostasis	6
H3K36me3 and H2A.Z coordinately modulate flowering time in Arabidopsis	6
Pan-genome analysis reveals a highly plastic genome and extensive secreted protein polymorphism in Puccinia striiformis f. sp. tritici	6
A heavy metal transporter gene ZmHMA3a promises safe agricultural production on cadmium-polluted arable land	6
Haplotype-resolved and chromosome-level genome assembly of Colorado potato beetle	6
Genetic diversity and population structure of Leptosphaeria maculans isolates in Western Canada	6
Age-dependent genetic architectures of chicken body weight explored by multidimensional GWAS and molQTL analyses	6
Gut microbiota, inflammation, and molecular signatures of host response to infection	6
Characterization of zebrafish alas2 reporter for study on erythropoiesis, blood flow, and erythroid disease	6
Genetic and epigenetic control on clock genes in multiple sclerosis	6
Current status and perspectives of regulatory T cell-based therapy	6
The future of zebrafish research: highlights from the 18th International Zebrafish Conference	6
ATN-161 alleviates caerulein-induced pancreatitis	6
Emerging functions of tRNA modifications in mRNA translation and diseases	6
Massively parallel characterization of non-coding de novo mutations in autism spectrum disorder	5
Improvement of wheat drought tolerance through editing of TaATX4 by CRISPR/Cas9	5
The testis-specific gene 1700030J22Rik is essential for sperm flagellar function and male fertility in mice	5
Progressive deterioration of the upper respiratory tract and the gut microbiomes in children during the early infection stages of COVID-19	5
Alternations in the gut microbiota and metabolome with newly diagnosed unstable angina	5
The role of genotype and diet in shaping gut microbiome in a genetic vitamin A deficient mouse model	5