OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Genetics and Genomics is 8. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-05-01 to 2024-05-01.)

Article	Citations
Evidence for a mouse origin of the SARS-CoV-2 Omicron variant	205
EVenn: Easy to create repeatable and editable Venn diagrams and Venn networks online	183
TaxonKit: A practical and efficient NCBI taxonomy toolkit	142
Nitrogen assimilation in plants: current status and future prospects	94
Single-cell transcriptome atlas of the leaf and root of rice seedlings	88
Mitochondrial sirtuins, metabolism, and aging	84
COVID-19 mRNA vaccines	59
CRISPR/Cas9-mediated disruption of TaNP1 genes results in complete male sterility in bread wheat	55
HPV-CCDC106 integration alters local chromosome architecture and hijacks an enhancer by three-dimensional genome structure remodeling in cervical cancer	47
Gut microbiota, inflammation, and molecular signatures of host response to infection	47
CRISPR/Cas9 editing of wheat TaQ genes alters spike morphogenesis and grain threshability	43
Plants response to light stress	39
Why is oocyte aneuploidy increased with maternal aging?	38
DNA methyltransferases in hematological malignancies	35
Longitudinal epitranscriptome profiling reveals the crucial role of N6-methyladenosine methylation in porcine prenatal skeletal muscle development	34
OsbZIP60-mediated unfolded protein response regulates grain chalkiness in rice	32
The molecular mechanism of plasma membrane H+-ATPases in plant responses to abiotic stress	32
The CRISPR/Cas9 revolution continues: From base editing to prime editing in plant science	32
Disruption of the autism-related gene Pak1 causes stereocilia disorganization, hair cell loss, and deafness in mice	31
Plant pan-genomics: recent advances, new challenges, and roads ahead	31
The atlas of cytoophidia in Drosophila larvae	30
Dynamics of severe acute respiratory syndrome coronavirus 2 genome variants in the feces during convalescence	29
From plant immunity to crop disease resistance	29
Investigation of CRISPR/Cas9-induced SD1 rice mutants highlights the importance of molecular characterization in plant molecular breeding	29
Natural variations in grain length 10 (GL10) regulate rice grain size	28

Nitric oxide negatively regulates gibberellin signaling to coordinate growth and salt tolerance in Arabidopsis	27
Progressive deterioration of the upper respiratory tract and the gut microbiomes in children during the early infection stages of COVID-19	27
Tumor necrosis factor-α signaling in nonalcoholic steatohepatitis and targeted therapies	27
Genome editing in plants with MAD7 nuclease	26
Characteristic dysbiosis in gout and the impact of a uric acid-lowering treatment, febuxostat on the gut microbiota	24
Understanding the genetic and molecular constitutions of heterosis for developing hybrid rice	23
Hd1, Ghd7, and DTH8 synergistically determine the rice heading date and yield-related agronomic traits	23
The HuaBiao project: whole-exome sequencing of 5000 Han Chinese individuals	23
EphA2: A promising therapeutic target in breast cancer	23
Insights into plant salt stress signaling and tolerance	22
Variants in the Wnt co-receptor LRP6 are associated with familial exudative vitreoretinopathy	22
Single-cell brain atlas of Parkinson's disease mouse model	22
Microbiota-gut-brain axis in autism spectrum disorder	22
Large-scale pharmacogenomic studies and drug response prediction for personalized cancer medicine	21
Altered gut microbiome in FUT2 loss-of-function mutants in support of personalized medicine for inflammatory bowel diseases	21
The dichotomous role of TGF-β in controlling liver cancer cell survival and proliferation	21
Exome sequencing reveals genetic architecture in patients with isolated or syndromic short stature	20
Regulation and integration of plant jasmonate signaling: a comparative view of monocot and dicot	20
CircRNA: a rising star in plant biology	20
Comparative study of gut microbiota from captive and confiscated-rescued wild pangolins	20
Abiotic stress-triggered oxidative challenges: Where does H2S act?	20
Spatially resolved transcriptomics: a comprehensive review of their technological advances, applications, and challenges	20
The challenge of emerging SARS-CoV-2 mutants to vaccine development	19
Understanding the mechanistic regulation of ferroptosis in cancer: the gene matters	19
Arabidopsis RPD3-like histone deacetylases form multiple complexes involved in stress response	19
Fructose and fructose kinase in cancer and other pathologies	19
Many facades of CTCF unified by its coding for three-dimensional genome architecture	19
PI3K/Akt/mTOR signaling orchestrates the phenotypic transition and chemo-resistance of small cell lung cancer	19
Genomic insight into the divergence and adaptive potential of a forgotten landrace G. hirsutum L. purpurascens	19
A high-resolution cell atlas of the domestic pig lung and an online platform for exploring lung single-cell data	18
OsMPK4 promotes phosphorylation and degradation of IPA1 in response to salt stress to confer salt tolerance in rice	18
The oral microbiome of pregnant women facilitates gestational diabetes discrimination	18
Genetic manipulations of TaARE1 boost nitrogen utilization and grain yield in wheat	17
Polycomb-group proteins in the initiation and progression of cancer	17
Newborn screening with targeted sequencing: a multicenter investigation and a pilot clinical study in China	17
Molecular insights into the transgenerational inheritance of stress memory	16
Generation of rat blood vasculature and hematopoietic cells in rat-mouse chimeras by blastocyst complementation	16
Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	16
Circular RNA ubiquitin-associated protein 2 enhances autophagy and promotes colorectal cancer progression and metastasis via miR-582-5p/FOXO1 signaling	16
Genomic atlases of introgression and differentiation reveal breeding footprints in Chinese cultivated rice	16
Phase separation in RNA biology	15
GenomeSyn: a bioinformatics tool for visualizing genome synteny and structural variations	15
The Melastoma dodecandrum genome and the evolution of Myrtales	14
Function of hydroxycinnamoyl transferases for the biosynthesis of phenolamides in rice resistance to Magnaporthe oryzae	14
Nucleolar histone deacetylases HDT1, HDT2, and HDT3 regulate plant reproductive development	14
Inducible CRISPRa screen identifies putative enhancers	14
A hypothetical model of trans-acting R-loops-mediated promoter-enhancer interactions by Alu elements	14
Mitotic inheritance of DNA methylation: more than just copy and paste	14
Functional characterization of powdery mildew resistance gene MlIW172, a new Pm60 allele and its allelic variation in wild emmer wheat	14
CRISPR-mediated host genomic DNA damage is efficiently repaired through microhomology-mediated end joining in Zymomonas mobilis	14

Genomic analyses reveal distinct genetic architectures and selective pressures in Chinese donkeys	14
GGVD: A goat genome variation database for tracking the dynamic evolutionary process of selective signatures and ancient introgressions	14
Quantitative proteomics reveals key pathways in the symbiotic interface and the likely extracellular property of soybean symbiosome	13
Analyses of functional conservation and divergence reveal requirement of bHLH010/089/091 for pollen development at elevated temperature in Arabidopsis	13
Identifying a melanogenesis-related candidate gene by a high-quality genome assembly and population diversity analysis in Hypsizygus marmoreus	13
Chromosome organization and gene expansion in the highly fragmented genome of the ciliate Strombidium stylifer	13
Molecular epigenetic mechanisms for the memory of temperature stresses in plants	13
Brassinosteroid signaling and molecular crosstalk with nutrients in plants	13
Genomic surveillance of Nevada patients revealed prevalence of unique SARS-CoV-2 variants bearing mutations in the RdRp gene	13
Chemical screening reveals Ronidazole is a superior prodrug to Metronidazole for nitroreductase-induced cell ablation system in zebrafish larvae	12
Polyamine oxidase 3 is involved in salt tolerance at the germination stage in rice	12
Suppressed mitochondrial respiration via NOX5-mediated redox imbalance contributes to the antitumor activity of anlotinib in oral squamous cell carcinoma	12
Phylogeny and sex chromosome evolution of Palaeognathae	12
A critical role of foxp3a-positive regulatory T cells in maintaining immune homeostasis in zebrafish testis development	12
Modulating the C-terminus of DEP1 synergistically enhances grain quality and yield in rice	12
Carrageenan oligosaccharides and associated carrageenan-degrading bacteria induce intestinal inflammation in germ-free mice	12
KDM2B promotes cell viability by enhancing DNA damage response in canine hemangiosarcoma	12
Regulation of nitrogen starvation responses by the alarmone (p)ppGpp in rice	12
Current status and perspectives of regulatory T cell-based therapy	12
RNA-binding motif protein RBM47 promotes tumorigenesis in nasopharyngeal carcinoma through multiple pathways	12
The chromatin remodeling complex imitation of switch controls stamen filament elongation by promoting jasmonic acid biosynthesis in Arabidopsis	11
The novel male meiosis recombination regulator coordinates the progression of meiosis prophase I	11
Targeted sequencing and integrative analysis of 3,195 Chinese patients with neurodevelopmental disorders prioritized 26 novel candidate genes	11
Fecal microbiota transplantation from young donor mice improves ovarian function in aged mice	11
Highly Regional Genes: graph-based gene selection for single-cell RNA-seq data	11
Comprehensive understanding to the public health risk of environmental microbes via a microbiome-based index	11
Ether phospholipids govern ferroptosis	11
The quantitative proteome atlas of a model cyanobacterium	11
Ufl1 deficiency causes kidney atrophy associated with disruption of endoplasmic reticulum homeostasis	11
Phosphorylation of an ethylene response factor by MPK3/MPK6 mediates negative feedback regulation of pathogen-induced ethylene biosynthesis in Arabidopsis	11
MIT1, encoding a 15-cis-ζ-carotene isomerase, regulates tiller number and stature in rice	11
A functional missense variant in ITIH3 affects protein expression and neurodevelopment and confers schizophrenia risk in the Han Chinese population	10
Derlin-1 and TER94/VCP/p97 are required for intestinal homeostasis	10
Deciphering spike architecture formation towards yield improvement in wheat	10
Landscape of transcript isoforms in single T cells infiltrating in non-small-cell lung cancer	10
Two zinc-finger proteins control the initiation and elongation of long stalk trichomes in tomato	10
Addition of the T5 exonuclease increases the prime editing efficiency in plants	10
Single-cell RNA-seq analysis of testicular somatic cell development in pigs	10
GenOrigin: A comprehensive protein-coding gene origination database on the evolutionary timescale of life	10
The rice histone methylation regulates hub species of the root microbiota	10
OsLTP47 may function in a lipid transfer relay essential for pollen wall development in rice	10
Active DNA demethylation regulates MAMP-triggered immune priming in Arabidopsis	10
Leptin gene-targeted editing in ob/ob mouse adipose tissue based on the CRISPR/Cas9 system	9
VSOLassoBag: a variable-selection oriented LASSO bagging algorithm for biomarker discovery in omic-based translational research	9
The gut microbiome and microbial metabolites in acute myocardial infarction	9
Genome sequence and transcriptome of Sorbus pohuashanensis provide insights into population evolution and leaf sunburn response	9
The advancements, challenges, and future implications of the CRISPR/Cas9 system in swine research	9
A genome-wide association study of facial morphology identifies novel genetic loci in Han Chinese	9
Two plant NLR proteins confer strain-specific resistance conditioned by an effector from Pseudomonas syringae pv. actinidiae	9
Genome transfer for the prevention of female infertility caused by maternal gene mutation	9
Caenorhabditis elegans homologue of Fam210 is required for oogenesis and reproduction	8
A p53/CPEB2 negative feedback loop regulates renal cancer cell proliferation and migration	8
Tn5-FISH, a novel cytogenetic method to image chromatin interactions with sub-kilobase resolution	8
Smyd1 is essential for myosin expression and sarcomere organization in craniofacial, extraocular, and cardiac muscles	8
The S100 calcium binding protein A11 promotes liver fibrogenesis by targeting TGF-β signaling	8
Decoding the plant genome: From epigenome to 3D organization	8
Conditional gene expression in invertebrate animal models	8
Genomes of 12 fig wasps provide insights into the adaptation of pollinators to fig syconia	8
Loss of Rbm24a causes defective hair cell development in the zebrafish inner ear and neuromasts	8
Von Hippel-Lindau tumor suppressor pathways & corresponding therapeutics in kidney cancer	8
Loss-of-function of KMT5B leads to neurodevelopmental disorder and impairs neuronal development and neurogenesis	8
The mechanisms of nucleotide actions in insulin resistance	8
Cervicovaginal microbiome dynamics after taking oral probiotics	8
Planar cell polarity regulators in asymmetric organogenesis during development and disease	8
Phosphatidylinositol 4-kinase β is required for the ciliogenesis of zebrafish otic vesicle	8