Molecular Plant

Article	Citations
Temperature-dependent regulation of seed dormancy	1465
CRISPR-Cas-based plant genome engineering goes viral	295
From plastids to the cytosol: Redefining boundaries for provitamin A biofortification in plants	246
Identification and biosynthesis of plant papanridins, a group of novel oligomeric flavonoids	240
Structural basis of RLP activation by a pathogen glycoside hydrolase	216
Breaking the interspecific reproductive barriers in Brassicaceae	209
SCOOP10 and SCOOP12 peptides act through MIK2 receptor-like kinase to antagonistically regulate Arabidopsis leaf senescence	197
Plant triterpenoid saponins function as susceptibility factors to promote the pathogenicity of Botrytis cinerea	190
DET1 regulates HY5 through COP1: A new paradigm in the regulation of HY5	160
Toward haplotype studies in polyploid plants to assist breeding	157
Evolutionarily conserved mechanosensor PIEZO in land plants	156
“Je t'aime moi non plus": A love-hate relationship between iron and phosphate	143
Vacuolar H+-ATPase and BZR1 form a feedback loop to regulate the homeostasis of BR signaling in Arabidopsis	136
Chloroplast immunity: A cornerstone of plant defense	134
Genomic insights into the genetic basis of cotton breeding in China	132
An endophytic fungus interacts with the defensin-like protein OsCAL1 to regulate cadmium allocation in rice	128
Rice Gene Index: A comprehensive pan-genome database for comparative and functional genomics of Asian rice	123
A new oxidative pathway of nitric oxide production from oximes in plants	122
A novel miR167a-OsARF6-OsAUX3 module regulates grain length and weight in rice	121
Structural variation (SV)-based pan-genome and GWAS reveal the impacts of SVs on the speciation and diversification of allotetraploid cottons	114
Efficient and multiplex gene upregulation in plants through CRISPR-Cas-mediated knockin of enhancers	110
Mitigating growth-stress tradeoffs via elevated TOR signaling in rice	109
Rice metabolic regulatory network spanning the entire life cycle	105
Structural insights into the functions of Raf1 and Bsd2 in hexadecameric Rubisco assembly	105
A telomere-to-telomere gap-free assembly of soybean genome	103

The OsNAC23-Tre6P-SnRK1a feed-forward loop regulates sugar homeostasis and grain yield in rice	102
Long-read sequencing (method of the year 2022): The way forward for plant omics research	102
Woody plant cell walls: Fundamentals and utilization	101
Complexes and complexities: INO80 takes center stage	99
PEP7 acts as a peptide ligand for the receptor kinase SIRK1 to regulate aquaporin-mediated water influx and lateral root growth	98
Global wild rice germplasm resources conservation alliance: World Wild-Rice Wiring	98
The nucleolus as a genomic safe harbor for strong gene expression in Nannochloropsis oceanica	97
Mirids secrete a TOPLESS targeting protein to enhance JA-mediated defense and gossypol accumulation for antagonizing cotton bollworms on cotton plants	96
Light-triggered reactions do not bias boron deficiency-induced root inhibition of Arabidopsis seedlings grown in Petri dishes	95
How ignoring market-informed crop varietal development fuels food price volatility	94
Thermomemory in shoot apical meristem: Regulation of carbohydrate metabolism and stem cell identity	94
Primary metabolism: It’s more than what's for dinner	94
Hydrogen sulfide-linked persulfidation of ABI4 controls ABA responses through the transactivation of MAPKKK18 in Arabidopsis	93
A new class of receptors for plant G-proteins	92
Population genomic analysis reveals domestication of cultivated rye from weedy rye	92
SIZ1-mediated SUMOylation of CPSF100 promotes plant thermomorphogenesis by controlling alternative polyadenylation	91
Mitophagy: From the dark into the spotlight	90
Robust transcriptional indicators of immune cell death revealed by spatiotemporal transcriptome analyses	86
Salicylic acid inhibits gibberellin signaling through receptor interactions	86
The HB40-JUB1 transcriptional regulatory network controls gibberellin homeostasis in Arabidopsis	86
A FLASH pipeline for arrayed CRISPR library construction and the gene function discovery of rice receptor-like kinases	85
Pyramiding favorable alleles in an elite wheat variety in one generation by CRISPR-Cas9-mediated multiplex gene editing	84
Nucleocytoplasmic trafficking during immunity	80
The CropGPT project: Call for a global, coordinated effort in precision design breeding driven by AI using biological big data	80
Wheat adaptation to environmental stresses under climate change: Molecular basis and genetic improvement	79
Plant and animal positive-sense single-stranded RNA viruses encode small proteins important for viral infection in their negative-sense strand	78
TBtools-II: A “one for all, all for one” bioinformatics platform for biological big-data mining	78
A cryptic inhibitor of cytokinin phosphorelay controls rice grain size	78
Too SHY 2 repress	76
Super graph-based pan-genome: Bringing rice functional genomic study into a new dawn	75
Manipulation of photosensory and circadian signaling restricts phenotypic plasticity in response to changing environmental conditions in Arabidopsis	75
Making connections with cell surface auxin signaling	75
An epic war between an oomycete pathogen and plants	73
Haplotype-based phylogenetic analysis and population genomics uncover the origin and domestication of sweetpotato	72
The dual-targeted transcription factor BAI1 orchestrates nuclear and plastid gene transcription in land plants	72
Chemical control of receptor kinase signaling by rapamycin-induced dimerization	70
On the evolution and genetic diversity of the bread wheat D genome	69
GRP7 phase separation as an interpreter of temperature cues	68
PDX1.1-dependent biosynthesis of vitamin B6 protects roots from ammonium-induced oxidative stress	68
Arabidopsis SYP121 acts as an ROP2 effector in the regulation of root hair tip growth	68
Potatome - harnessing natural variation of potatoes	68
Adenosine monophosphate enhances callus regeneration competence for de novo plant organogenesis	67
The protein–protein interaction landscape of transcription factors during gynoecium development in Arabidopsis	67
Interspecific plant interaction via root exudates structures the disease suppressiveness of rhizosphere microbiomes	66
Zinc in plants: Integrating homeostasis and biofortification	65
The super-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread forest trees	65
Finding my way: The role of dirigent proteins in lignin assembly	64
Improving maize seed protein content and nitrogen-use efficiency by a teosinte asparagine synthetase	64
TMK: A crucial piece of the acid growth puzzle	64
Plant cytochrome P450 plasticity and evolution	63

QT–GWAS: A novel method for unveiling biosynthetic loci affecting qualitative metabolic traits	63
Uncover the mystery of pleiotropic effects of PROG1 during rice domestication	63
The lncRNA MARS modulates the epigenetic reprogramming of the marneral cluster in response to ABA	62
Elucidation and de novo reconstitution of glyceollin biosynthesis	62
Reprogrammable design of DELLA as a strategy to mitigate alkaline–heat stress for sustainable agriculture	61
International research initiative on genomics-guided sugarcane breeding	61
Decoding the Senses: A New Player in Plant-Virus Dynamics Unveiled	60
Engineering crop resistance by manipulating disease susceptibility genes	59
A k-mer-based pangenome approach for cataloging seed-storage-protein genes in wheat to facilitate genotype-to-phenotype prediction and improvement of end-use quality	59
Ancestral genome reconstruction for studies of the green lineage	58
FERONIA signaling maintains cell wall integrity during brassinosteroid-induced cell expansion in Arabidopsis	58
pH sensing in plants	58
Pathogen-induced methylglyoxal negatively regulates rice bacterial blight resistance by inhibiting OsCDR1 protease activity	58
A decoy receptor derived from alternative splicing fine-tunes cytokinin signaling in Arabidopsis	57
Back to wild relatives for future breeding through super-pangenome	57
Arsenite provides a selective signal that coordinates arsenate uptake and detoxification through the regulation of PHR1 stability in Arabidopsis	57
RAF22, ABI1 and OST1 form a dynamic interactive network that optimizes plant growth and responses to drought stress in Arabidopsis	56
Differentiation trajectories and biofunctions of symbiotic and un-symbiotic fate cells in root nodules of Medicago truncatula	56
Small holes, big impact: Stomata in plant–pathogen–climate epic trifecta	56
The Dof transcription factor COG1 acts as a key regulator of plant biomass by promoting photosynthesis and starch accumulation	55
Development of a widely targeted volatilomics method for profiling volatilomes in plants	55
A viral movement protein targets host catalases for 26S proteasome-mediated degradation to facilitate viral infection and aphid transmission in wheat	55
WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes	55
Wheat-RegNet: An encyclopedia of common wheat hierarchical regulatory networks	54
The power of chromosome-scale, haplotype-resolved genomes	53
A cell wall-localized NLR confers resistance to Soybean mosaic virus by recognizing viral-encoded cylindrical inclusion protein	53
Blue revolution for food security under carbon neutrality: A case from the water-saving and drought-resistance rice	52
The supercomplex formation between the chloroplast NADH dehydrogenase-like complex and photosystem I	52
An MCIA-like complex is required for mitochondrial complex I assembly and seed development in maize	52
Coordinated regulation of plant immunity by poly(ADP-ribosyl)ation and K63-linked ubiquitination	52
FERONIA-mediated TIR1/AFB2 oxidation stimulates auxin signaling in Arabidopsis	51
Streamline unsupervised machine learning to survey and graph indel-based haplotypes from pan-genomes	51
Wheat2035: Integrating pan-omics and advanced biotechnology for future wheat design	50
A chromosome-level genome assembly reveals that a bipartite gene cluster formed via an inverted duplication controls monoterpenoid biosynthesis in Schizonepeta tenuifolia	49
SH3P2, an SH3 domain-containing protein that interacts with both Pib and AvrPib, suppresses effector-triggered, Pib-mediated immunity in rice	49
Endosperm ontogeny through the lens of epigenetics	48
AlphaFold-guided redesign of a plant pectin methylesterase inhibitor for broad-spectrum disease resistance	48
Histone H4K8hib modification promotes gene expression and regulates rice immunity	48
9,10-KODA, an α-ketol produced by the tonoplast-localized 9-lipoxygenase ZmLOX5, plays a signaling role in maize defense against insect herbivory	48
Smart Breeding Platform: A web-based tool for high-throughput population genetics, phenomics, and genomic selection	48
Gene editing produces CoQ10 rice	48
OsHYPK-mediated protein N-terminal acetylation coordinates plant development and abiotic stress responses in rice	48
A “protector” model for membrane trafficking-regulated and NLR-mediated plant immunity	48
The cartography of plant immunity: Proximity labeling puts a novel SGT1–NSL1 regulatory module on the map	47
Nuclear translocation of OsMFT1 that is impeded by OsFTIP1 promotes drought tolerance in rice	46
Understanding source–sink interactions: Progress in model plants and translational research to crops	46
Nitric oxide regulation of plant metabolism	46
Systematic identification of wheat spike developmental regulators by integrated multi-omics, transcriptional network, GWAS, and genetic analyses	46
A top HAT: a maize mutant hypersusceptible to Agrobacterium transformation	46
Bromodomain-containing proteins BRD1, BRD2, and BRD13 are core subunits of SWI/SNF complexes and vital for their genomic targeting in Arabidopsis	46
Regulatory dynamics of the higher-plant PSI–LHCI supercomplex during state transitions	45
Calcium-dependent activation of CPK12 facilitates its cytoplasm-to-nucleus translocation to potentiate plant hypoxia sensing by phosphorylating ERF-VII transcription factors	45
A virus-derived siRNA activates plant immunity by interfering with ROS scavenging	45
Four plasma membrane-localized MGR transporters mediate xylem Mg2+ loading for root-to-shoot Mg2+ translocation in Arabidopsis	45
IIIVmrMLM: The R and C++ tools associated with 3VmrMLM, a comprehensive GWAS method for dissecting quantitative traits	45
Development and maintenance of the ligular region of maize leaves	44
Cultivating potential: Harnessing plant stem cells for agricultural crop improvement	44
Mixing and matching SMXL proteins to fine-tune strigolactone responses	44
Gene duplication drove the loss of awn in sorghum	44
Jazzin’ up nodules: The groovy role of jasmonic acid during nodulation	44
WheatOmics: A platform combining multiple omics data to accelerate functional genomics studies in wheat	44
Rise of the ethylene biosynthesis machinery from the Cβ-S lyase	43
Darwin’s Orchid: Plant–Pollinator Coevolution, Chemical Ecology and Genomic Insights into Convergent Evolution of Floral Scent Biosynthesis	43
AraENCODE: A comprehensive epigenomic database of Arabidopsis thaliana	43
Molecular mechanism of Verticillium dahliae-induced leaf senescence	42
A new phase of treasure hunting in plant genebanks	41
Asymmetric brassinosteroid signaling and biosynthesis during symmetric cell divisions	41
Pollen hydration: A tale of two peptides	41
OsPRMT6a-mediated arginine methylation of OsJAZ1 regulates jasmonate signaling and spikelet development in rice	40
Steroidal scaffold decorations in Solanum alkaloid biosynthesis	40
Strigolactone-gibberellin crosstalk mediated by a distant silencer fine-tunes plant height in upland cotton	40
Activation of stress-response genes by retrograde signaling-mediated destabilization of nuclear importin IMPα-9 and its interactor TPR2	40
Targeting of anti-microbial proteins to the hyphal surface amplifies protection of crop plants against Phytophthora pathogens	40
Conserved and differentiated functions of CIK receptor kinases in modulating stem cell signaling in Arabidopsis	40
Phase separation of the nuclear pore complex facilitates selective nuclear transport to regulate plant defense against pathogen and pest invasion	40
Volatilome-based GWAS identifies OsWRKY19 and OsNAC021 as key regulators of rice aroma	39
Gapless indica rice genome reveals synergistic contributions of active transposable elements and segmental duplications to rice genome evolution	39
Specialized metabolites as versatile tools in shaping plant–microbe associations	39
CONSTANS alters the circadian clock in Arabidopsis thaliana	39
Low phosphorus promotes NSP1–NSP2 heterodimerization to enhance strigolactone biosynthesis and regulate shoot and root architecture in rice	38

Genetic and molecular exploration of maize environmental stress resilience: Toward sustainable agriculture	38
Verticillium dahliae secretory effector PevD1 induces leaf senescence by promoting ORE1-mediated ethylene biosynthesis	38
From the T2T cotton genome to a tripartite regulatory module governing embryo folding	37
Cells know how big they are	37
Underwater survival: Calcium signaling keeps plants afloat	37
GEFormer: A genotype-environment interaction-based genomic prediction method that integrates the gating multilayer perceptron and linear attention mechanisms	37
Protein phase separation of plant nuclear pore complex	37
Nitrate confers rice adaptation to high ammonium by suppressing its uptake but promoting its assimilation	37
Heat stress-induced decapping of WUSCHEL mRNA enhances stem cell thermotolerance in Arabidopsis	36
Botanical timekeepers: Deciphering evolutionary relationships in plants	36
Three functionally redundant plant-specific paralogs are core subunits of the SAGA histone acetyltransferase complex in Arabidopsis	36
A telomere-to-telomere genome assembly of the cultivated peanut	36
Control of H2S synthesis by the monomer–oligomer transition of OsCBSX3 for modulating rice growth-immunity balance	36
Breaking the spatial restriction of pluripotency acquisition by environmental stimuli	35
Unraveling the sorghum domestication	35
Insects manipulate plant immunity via a cross-kingdom small RNA effector	35
The winners of Rising Stars in Plant Sciences 2024	35
Plant virus–derived siRNAs “turn on” broad-spectrum plant immunity in wheat	35
Distinctive and complementary roles of E2F transcription factors during plant replication stress responses	35
NAC1 goes TOPLESS to manage cortex proliferation	35
A molecular framework underlying low-nitrogen-induced early leaf senescence in Arabidopsis thaliana	35
Perenniality: From model plants to applications in agriculture	34
The RALF1-FERONIA complex interacts with and activates TOR signaling in response to low nutrients	34
Nitrogen–iron interaction as an emerging factor influencing crop productivity and nutrient use efficiency	34
The BCM1-EGY1 module balances chlorophyll biosynthesis and breakdown to confer chlorophyll homeostasis in land plants	34
Regulation of jasmonate signaling by reversible acetylation of TOPLESS in Arabidopsis	34
Rewilding staple crops for the lost halophytism: Toward sustainability and profitability of agricultural production systems	34
WD40 protein-mediated crosstalk among three epigenetic marks regulates chromatin states and yield in rice	33
Epigenetic reprogramming by glucose-TOR signaling controls plant development	33
Mobilizing Triticeae diversity from gene banks to farmer’s field	33
Chloroplast state transitions modulate nuclear genome stability via cytokinin signaling in Arabidopsis	33
Genome sequences of five Sitopsis species of Aegilops and the origin of polyploid wheat B subgenome	33
A step forward in breeding for ratooning ability in rice	33
Toward the next step to the New Green Revolution	33
A war on the cell wall	33
A karyopherin constrains nuclear activity of the NLR protein SNC1 and is essential to prevent autoimmunity in Arabidopsis	33
(Not) an elementary question: How to mobilize the iron in the wall?	33
Methylesterification of cell-wall pectin controls the diurnal flower-opening times in rice	32
Comparative genomic and transcriptomic analyses uncover the molecular basis of high nitrogen-use efficiency in the wheat cultivar Kenong 9204	32
Polycomb and trithorax: Their yin-yang dynamics in plants	32
A SPX domain vacuolar transporter links phosphate sensing to homeostasis in Arabidopsis	32
SUMOylation-modified Pelota-Hbs1 RNA surveillance complex restricts the infection of potyvirids in plants	32
SoyOmics: A deeply integrated database on soybean multi-omics	32
CIK receptor kinases in root meristem	32
RIN enhances plant disease resistance via root exudate-mediated assembly of disease-suppressive rhizosphere microbiota	31
Epitranscriptome engineering in crop improvement	31
The ferroxidases LPR1 and LPR2 control iron translocation in the xylem of Arabidopsis plants	31
Arabidopsis WRKY1 promotes monocarpic senescence by integrative regulation of flowering, leaf senescence, and nitrogen remobilization	31
Lack of ethylene does not affect reproductive success and synergid cell death in Arabidopsis	31
Cell-type-specific transcriptomics reveals that root hairs and endodermal barriers play important roles in beneficial plant-rhizobacterium interactions	30
A complete reference genome assembly for foxtail millet and Setaria-db, a comprehensive database for Setaria	30
Stomatal regulation: Role of H2S-induced persulfidation in ABA signaling	30
The tip of the iceberg: ROP2 directly interacts with SYP121 to regulate root-hair polarization, elongation, and exocytosis	29
Increasing seed lint fiber density for promoting cotton yield: Opportunities and challenges	29
An unprecedented one-arrow-two-hawks strategy achieves high yield with early flowering in rice	29
Genetic insights into adaptation of alfalfa	29
A highly efficient and environmentally friendly strategy to obtain transgene-free genome-edited progeny in flowering plants	28
Creating one-line hybrid crops by synthetic apomixis	28
RLKdb: A comprehensively curated database of plant receptor-like kinase families	28
High-temperature wheat leaf rust resistance gene Lr13 exhibits pleiotropic effects on hybrid necrosis	28
Cytokinin signaling connects the chloroplast function with nuclear genome stability	28
Improving rice photosynthesis and yield through trehalose 6-phosphate signaling	27
Cherish your weeds	27
Moving magnesium	27
DNA damage: Driver of methylome reshaping?	27
A circular single-stranded DNA mycovirus infects plants and confers broad-spectrum fungal resistance	27
A gap-free complete genome assembly of oat and OatOmics, a multi-omics database	27
Why 2022 is a revolutionary year for potato genomics	26
Genomic, transcriptomic, and metabolomic analyses reveal convergent evolution of oxime biosynthesis in Darwin’s orchid	26
Legume-specific SnRK1 promotes malate supply to bacteroids for symbiotic nitrogen fixation	26
The genome of the recretohalophyte Limonium bicolor provides insights into salt gland development and salinity adaptation during terrestrial evolution	26
Improving the haploidization toolbox: Maternal factors take the stage	26
Overproduction of OsRACK1A, an effector-targeted scaffold protein promoting OsRBOHB-mediated ROS production, confers rice floral resistance to false smut disease without yield penalty	25
Cellulose synthesis in land plants	25
Sensing H2O2 for defense in plants	25
Graph-based pangenome provides insights into structural variations and genetic basis of metabolic traits in potato	25
Plant PAQR-like sensors activate heterotrimeric G proteins to confer resistance against multiple pathogens	25
Arsenite provides a selective signal that coordinates arsenate uptake and detoxification through the regulation of PHR1 stability in Arabidopsis	25
Sailing in complex nutrient signaling networks: Where I am, where to go, and how to go?	25
The genomes of Taxus species unveil novel candidates in the biosynthesis of taxoids	25
Inferring the genome-wide history of grasses	25
Smart breeding driven by big data, artificial intelligence, and integrated genomic-enviromic prediction	25
Launching, perceiving, and diminishing of airborne signals	25
Phosphoinositides: Emerging players in plant salinity stress tolerance	25
COG1 – A master transcription factor regulating photosynthesis	25
Plant breeding highlights master genes in major regulatory pathways	24
Dt1 inhibits SWEET-mediated sucrose transport to regulate photoperiod-dependent seed weight in soybean	24
Phosphorus lights up the trade-off between growth and immunity	24
Speed vernalization to accelerate generation advance in winter cereal crops	24
A useful toolbox for the detection of SCF E3 ligase activity	24
Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity	24
A viral protein orchestrates rice ethylene signaling to coordinate viral infection and insect vector-mediated transmission	24
Co-evolved plant and blast fungus ascorbate oxidases orchestrate the redox state of host apoplast to modulate rice immunity	24
Eat at the right time: Regulation of ER-phagy receptors in plant response to environmental stresses	23
ITPK1 functions as both a kinase and an ADP phosphotransferase in Pi signaling	23