OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Systematics and Evolution is 7. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-05-01 to 2024-05-01.)

Article	Citations
Plant adaptation to climate change—Where are we?	85
Genomic architectural variation of plant mitochondria—A review of multichromosomal structuring	73
A worldwide phylogenetic classification of the Poaceae (Gramineae) III: An update	70
Major clades and a revised classification of Magnolia and Magnoliaceae based on whole plastid genome sequences via genome skimming	68
Evolutionary origin of species diversity on the Qinghai–Tibet Plateau	59
A new classification of Cyperaceae (Poales) supported by phylogenomic data	48
A framework infrageneric classification of Carex (Cyperaceae) and its organizing principles	47
Capturing single‐copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in Vitaceae	44
A phylogenomic perspective on gene tree conflict and character evolution in Caprifoliaceae using target enrichment data, with Zabelioideae recognized as a new subfamily	43
Spatial phylogenetics of the North American flora	41
Grasses through space and time: An overview of the biogeographical and macroevolutionary history of Poaceae	40
Phylogenomic relationships and species identification of the olive genus Olea (Oleaceae)	35
Origins of cultivars of Chrysanthemum—Evidence from the chloroplast genome and nuclear LFY gene	33
Fine‐scale genetic structure of Tujia and central Han Chinese revealing massive genetic admixture under language borrowing	31
Plastid and nuclear phylogenomic incongruences and biogeographic implications of Magnolia s.l. (Magnoliaceae)	31
Phylogenomics enables biogeographic analysis and a new subtribal classification of Andropogoneae (Poaceae—Panicoideae)	31
An updated Chinese vascular plant tree of life: Phylogenetic diversity hotspots revisited	30
Phylogenomics of the hyperdiverse daisy tribes: Anthemideae, Astereae, Calenduleae, Gnaphalieae, and Senecioneae	26
Dynamism and context‐dependency in diversification of the megadiverse plant genus Solanum (Solanaceae)	26
Phylogenomics, biogeography, and evolution of morphology and ecological niche of the eastern Asian–eastern North American Nyssa (Nyssaceae)	25
Fine‐scale north‐to‐south genetic admixture profile in Shaanxi Han Chinese revealed by genome‐wide demographic history reconstruction	23
Out of the Pan‐Himalaya: Evolutionary history of the Paeoniaceae revealed by phylogenomics	22
Restriction‐site associated DNA sequencing data reveal a radiation of willow species (Salix L., Salicaceae) in the Hengduan Mountains and adjacent areas	22
Phylotranscriptomics reveals extensive gene duplication in the subtribe Gentianinae (Gentianaceae)	21
Biogeography and ecological niche evolution in Diapensiaceae inferred from phylogenetic analysis	21

Genomic insights into speciation history and local adaptation of an alpine aspen in the Qinghai–Tibet Plateau and adjacent highlands	20
Comparative analysis of complete plastid genome reveals powerful barcode regions for identifying wood of Dalbergia odorifera and D. tonkinensis (Leguminosae)	19
Phylogenomic analysis clarifies the evolutionary origin of Coffea arabica	18
Cryptic lineages and potential introgression in a mixed‐ploidy species (Phragmites australis) across temperate China	18
Resolving robust phylogenetic relationships of core Brassicaceae using genome skimming data	17
Extensive ethnolinguistic diversity at the crossroads of North China and South Siberia reflects multiple sources of genetic diversity	17
Ancestral gene duplications in mosses characterized by integrated phylogenomic analyses	17
Geographical vs. ecological diversification in Carex section Phacocystis (Cyperaceae): Patterns hidden behind a twisted taxonomy	17
The diversification of the northern temperate woody flora – A case study of the Elm family (Ulmaceae) based on phylogenomic and paleobotanical evidence	16
Gen‐morph species concept—A new and integrative species concept for outbreeding organisms	16
Mitochondrial genes from 18 angiosperms fill sampling gaps for phylogenomic inferences of the early diversification of flowering plants	16
A multilocus phylogeny of the moss genus Didymodon and allied genera (Pottiaceae): Generic delimitations and their implications for systematics	16
Macroevolutionary insights into sedges (Carex: Cyperaceae): The effects of rapid chromosome number evolution on lineage diversification	16
Phylogenomics, biogeography, and evolution of the blue‐ or white‐fruited dogwoods (Cornus)—Insights into morphological and ecological niche divergence following intercontinental geographic isol	15
Dispersal and adaptive radiation of Bidens (Compositae) across the remote archipelagoes of Polynesia	15
Phylogeny and biogeography of Fagus (Fagaceae) based on 28 nuclear single/low‐copy loci	15
Genomic data reveal two distinct species from the widespread alpine ginger Roscoea tibetica Batalin (Zingiberaceae)	14
The evolution of key functional floral traits in the early divergent angiosperm family Annonaceae	14
Phylogenomics of Perityleae (Compositae) provides new insights into morphological and chromosomal evolution of the rock daisies	13
Phylogenomic and comparative analyses of Rheum (Polygonaceae, Polygonoideae)	13
Ecological and geological processes impacting speciation modes drive the formation of wide‐range disjunctions within tribe Putorieae (Rubiaceae)	13
Population structure, landscape genomics, and genetic signatures of adaptation to exotic disease pressure in Cornus florida L.—Insights from GWAS and GBS data	13
Cryptic diversity and significant cophylogenetic signal detected by DNA barcoding the rust fungi (Pucciniaceae) of Cyperaceae–Juncaceae	13
Better together: Joint consideration of anatomy and morphology illuminates the architecture and life history of the Carboniferous arborescent lycopsid Paralycopodites	13
Assessing the sensitivity of divergence time estimates to locus sampling, calibration points, and model priors in a RAD‐seq phylogeny of Carex section Schoenoxiphium	12
RADseq resolves the phylogeny of Hawaiian Myrsine (Primulaceae) and provides evidence for hybridization	12
Phylogenetics of global Camellia (Theaceae) based on three nuclear regions and its implications for systematics and evolutionary history	12
Plastid phylogenomics shed light on intergeneric relationships and spatiotemporal evolutionary history of Melocanninae (Poaceae: Bambusoideae)	12
What is truth: Consensus and discordance in next‐generation phylogenetic analyses of Daucus	11
Northern gene flow into southeastern East Asians inferred from genome‐wide array genotyping	10
Natural interploidy hybridization among the key taxa involved in the origin of horticultural chrysanthemums	10
Phylogenomic study of Amorphophallus (Alismatales; Araceae): When plastid DNA gene sequences help to resolve the backbone subgeneric delineation	10
Extensive Miocene speciation in and out of Indochina: The biogeographic history of Typhonium sensu stricto (Araceae) and its implication for the assembly of Indochina flora	10
Targeted sequencing supports morphology and embryo features in resolving the classification of Cyperaceae tribe Fuireneae s.l.	10
A systematic study of North American Angelica species (Apiaceae) based on nrDNA ITS and cpDNA sequences and fruit morphology	10
Joint effect of phylogenetic relatedness and trait selection on the elevational distribution of Rhododendron species	10
Chloroplast genomes of key species shed light on the evolution of the ancient genus Isoetes	10
Fossil fruits of Illigera (Hernandiaceae) from the Eocene of central Tibetan Plateau	10
Unravelling evolutionary relationships between epifoliar Meliolaceae and angiosperms	10
Reconstructing the genetic admixture history of Tai‐Kadai and Sinitic people: Insights from genome‐wide SNP data from South China	10
Thistle be a mess: Untangling the taxonomy of Cirsium (Cardueae: Compositae) in North America	10
Landscape genomics reveals genetic evidence of local adaptation in a widespread tree, the Chinese wingnut (Pterocarya stenoptera)	10
More than one sweet tabaiba: Disentangling the systematics of the succulent dendroid shrub Euphorbia balsamifera	10
Plant–insect chemical communication in ecological communities: An information theory perspective	9
Diversity of higher plants in China	9
Miocene Ethiopian amber: A new source of fossil cryptogams	9
Phylogenomics of Fargesia and Yushania reveals a history of reticulate evolution	9
Phylogenomics and biogeography of Wisteria: Implications on plastome evolution among inverted repeat‐lacking clade (IRLC) legumes	9
Comprehensive transcriptome analyses of two Oocystis algae provide insights into the adaptation to Qinghai–Tibet Plateau	9
Pollinator shifts along an elevation gradient mediate different response in self‐pollination in heterostylous Primula nivalis	9

Integrative taxonomy of herbaceous plants with narrow fragmented distributions: A case study on Primula merrilliana species complex	9
Integrating coalescent‐based species delimitation with ecological niche modeling delimited two species within the Stewartia sinensis complex (Theaceae)	9
Breeding systems and phylogeny in Poa, with special attention to Northeast Asia: The problem of Poa shumushuensis and sect. Nivicolae (Poaceae)	9
Re‐terrestrialization in the phylogeny of epiphytic plant lineages: Microsoroid ferns as a case study	8
Phylogenomics and biogeography of Torreya (Taxaceae)—Integrating data from three organelle genomes, morphology, and fossils and a practical method for reducing missing data from RAD‐seq	8
Comparative analysis of 343 plastid genomes of Solanum section Petota: Insights into potato diversity, phylogeny, and species discrimination	8
Population genetic structure of the giant panda staple food bamboo (Fargesia spathacea complex) and its taxonomic implications	8
Functional traits: Adaption of ferns in forest	8
Evaluating the status of fern and lycophyte nothotaxa in the context of the Pteridophyte Phylogeny Group classification (PPG I)	8
Plant diversity and ecology on the Qinghai–Tibet Plateau	8
Species delimitation of the liquorice tribe (Leguminosae: Glycyrrhizeae) based on phylogenomic and machine learning analyses	8
Low genetic diversity and population connectivity fuel vulnerability to climate change for the Tertiary relict pine Pinus bungeana	7
Phylogenetic relationships and the maternal donor of Roegneria (Triticeae: Poaceae) based on three nuclear DNA sequences (ITS, Acc1, and Pgk1) and one chloroplast region (trnL‐	7
Monograph of Carex section Schiedeanae (Cyperaceae): Unexpected taxonomic and ecological diversity in a Mexican sedge clade	7
New Eocene fossil fruits and leaves of Menispermaceae from the central Tibetan Plateau and their biogeographic implications	7
A unique record of Cercis from the late early Miocene of interior Asia and its significance for paleoenvironments and paleophytogeography	7
Nuclear and plastid phylogenomic analyses provide insights into the reticulate evolution, species delimitation, and biogeography of the Sino‐Japanese disjunctive Diabelia (Caprifoliaceae)	7
Contrasting patterns of phylogenetic diversity across climatic zones of Western Ghats: A biodiversity hotspot in peninsular India	7
Animal‐mediated long‐distance dispersals and migrations shaping the intercontinental disjunctions of Celastrus (Celastraceae) among five continents	7
Recent structural variations in the Medicago chloroplast genomes and their horizontal transfer into nuclear chromosomes	7
Collections‐based systematics and biogeography in the 21st century: A tribute to Dr. Vicki Funk	7
Plastid phylogenomics and biogeography of the genus Monochoria (Pontederiaceae)	7
Phylogenetic analyses confirm polyphyly of the genus Campanula (Campanulaceae s. str.), leading to a proposal for generic reappraisal	7
Biogeography, timing, and life‐history traits in the PPAM clade: Coleanthinae (syn. Puccinelliinae), Poinae, Alopecurinae superclade, Miliinae, and Avenulinae and Phleinae (Poaceae, Pooideae, Poeae)	7
Altitude‐related shift of relative abundance from insect to sunbird pollination in Elaeagnus umbellata (Elaeagnaceae)	7
Phylogeny, classification, and biogeography of Afrotrichloris, Apochiton, Coelachyrum, Dinebra, Eleusine, Leptochloa, Schoenefeldia, and a new genus, Schoenefeldiella (Poaceae: Chloridoi	7