Nature Reviews Microbiology

Papers
(The median citation count of Nature Reviews Microbiology is 1. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-11-01 to 2025-11-01.)
ArticleCitations
Adapting to host life3078
Honey bee symbiont gives larvae a boost2077
Schistosomes go single cell958
Gender justice and prioritizing women and girls in the HIV response932
Viruses on the move916
Gut–brain axis in ageing840
Genetics, ecology and evolution of phage satellites800
Clostridioides difficile toxins: mechanisms of action and antitoxin therapeutics797
Finding the lock to fit the key: Ebola virus entry776
Author Correction: Anti-trypanosomatid drug discovery: progress and challenges741
Measles is resurging in the Americas and the world is watching722
Viral spillback694
Commensalism and pathogenesis of Candida albicans at the mucosal interface612
Sticky Candida auris601
The soil plastisphere595
Microbial diversity in extreme environments481
Ending the COVID-19 pandemic476
Designer viral receptors453
Parasitic control of wolf behaviour452
Viruses unveil the mechanisms of nuclear entry435
Pioneering microbiome engineering419
Scavenging a pyrimidine to thrive416
Taking the jump to humans392
Indirect intervention380
The intruders that stole the master key377
The endosymbiotic box of protective tricks368
A microbial metabolite to master inflammation363
Sewer biofilms and SARS-CoV-2361
Prevention, treatment and cure of HIV infection359
The human skin microbiome: from metagenomes to therapeutics358
Microorganisms, climate change, and the Sustainable Development Goals: progress and challenges351
Microbiome-based therapeutics345
Microbial secondary metabolites: advancements to accelerate discovery towards application329
Satellite RNA takes flight327
Bacteria like it soft303
Phages get snappy300
Rediscovering plasmid-dependent phages295
Microbial adaptability in changing environments292
Translating eco-evolutionary biology into therapy to tackle antibiotic resistance278
SARS-CoV-2 viral load and shedding kinetics277
The role of bacterial metabolism in antimicrobial resistance261
Bacterial siderophores: diversity, uptake pathways and applications260
Microbiota in disease-transmitting vectors254
Avian influenza takes flight in humans by evading restriction249
Copper contraceptive induces dysbiosis240
Engineered Mycoplasma fight lung infections233
How flaviviruses infect both humans and insects224
Anti-defence islands in plasmids215
Bottleneck and spread of Treponema pallidum211
Defending against plasmids207
A molecular decoy for phage defence206
Fitting into your niche199
Coronavirus research: knowledge gaps and research priorities198
Bacterial small molecule metabolites implicated in gastrointestinal cancer development196
Challenges and strategies for addressing antibacterial drug resistance in LMICs195
The coral microbiome in sickness, in health and in a changing world194
Highly pathogenic H5N1 avian influenza virus outbreak in cattle: the knowns and unknowns193
Antigenic evolution will lead to new SARS-CoV-2 variants with unpredictable severity178
The gut–airway microbiome axis in health and respiratory diseases173
Microplastics impair seabird gut microbiomes169
Enterocloster undermine cancer immunotherapy155
A manipulating pair154
Outgrowing antibiotic action153
PrEPping the skin152
A gut bacterium trims mucosal immunity145
Uropathogenic E. coli creates a memory144
Decisions, decisions…141
Illuminating microbial defence systems in extreme environments139
Biosynthesis and function of magnetic organelles in magnetotactic bacteria137
Aspergillus fumigatus biology, immunopathogenicity and drug resistance135
The rapid emergence of antifungal-resistant human-pathogenic fungi134
Addressing the fungal diagnostic gap in LMICs133
Intelligent bacteria for IBD129
Author Correction: Pathogenesis, epidemiology and control of Group A Streptococcus infection126
Whisperings from not so silent mutations125
Extracellular niche establishment by plant pathogens125
Bacterial DNA excision repair pathways124
A soothing bite for chikungunya122
Co-evolution of immunity and seasonal influenza viruses121
The biofilm life cycle: expanding the conceptual model of biofilm formation120
In tandem towards resistance119
From soil to battling antimicrobial resistance116
H. pylori evolution during disease116
Metagenomics distilled: new k-mer-based methods111
Blurred lines in the mycorrhiza world111
From B to Z in the matrix111
Anthropogenic impacts on the terrestrial subsurface biosphere108
The microbial carbon pump and climate change104
Immune evasion and provocation by Mycobacterium tuberculosis103
Spreading out of the lung102
Cross-kingdom defence proteins102
Off to a new host100
The rising mpox crisis99
Motor-powered trafficking95
A tale of two codes95
Bee-saving symbionts93
Capturing glycans92
Overcoming supply issues90
Reviving colistin85
Novel metallo-β-lactamase inhibitors84
Skin-deep AMR hotspots in nursing homes82
Monitoring pathogens in wastewater80
Blasting away a fungal pathogen78
Author Correction: Examining the healthy human microbiome concept77
Building climate-resilient agriculture through science and local action73
The ecological roles of bacterial chemotaxis73
The honeybee microbiota and its impact on health and disease69
Microbial solutions must be deployed against climate catastrophe67
Emergence, transmission dynamics and mechanisms of artemisinin partial resistance in malaria parasites in Africa65
A driver of monkeypox virus evolution?65
Recording the gut transit64
Microbiome cartography64
Preventing programmed destruction64
Mapping the microbiome milieu62
Quality MAGnified62
Campylobacter spreads colorectal cancer61
Viral emergence and pandemic preparedness in a One Health framework61
Epstein–Barr virus pathogenesis and emerging control strategies60
Coordinated action by individuals orchestrates infection through the division of labour60
Bacterial architects build the biofilm structures58
Lactobacilli biology, applications and host interactions57
Gradients and consequences of heterogeneity in biofilms55
Climate change impacts on plant pathogens, food security and paths forward55
The gut microbiota and its biogeography53
Antimicrobial peptides: structure, functions and translational applications53
Long-term control of HIV53
Chemotaxis in the ocean52
Busy symbionts during hibernation51
Microbiome shift in degrading soil51
Settling with the motion50
Novel C. difficile toxin receptor49
Bioplastic builders49
Wolbachia likes it hot49
Lassoing bacterial ribosomes47
Evasion of plant immunity by microbial pathogens45
Keep calm with ammonia-producing microbiota43
Infectious diseases and the Sustainable Development Goals: progress, challenges and future directions43
Warming waters, declining Prochlorococcus42
The HIV-1 envelope glycoprotein: structure, function and interactions with neutralizing antibodies42
M. tuberculosis regulatory evolution levels up transmission and resistance42
The pathobiology of human fungal infections41
The bodily distribution of monkeypox virus40
Unravelling the genome of giants40
The branches of the tree of life40
A potential new player in gastric cancer40
Testing fast with uRAST35
SARS-CoV-2 genomics as a springboard for future disease mitigation in LMICs32
Unearthing the story of the first antifungal drugs32
Gut phages fuel food addiction32
Gut microbiota and depression31
Zoonotic threats hidden in wildlife29
Shigella sonnei: epidemiology, evolution, pathogenesis, resistance and host interactions28
Pertussis vaccines, epidemiology and evolution28
Interactions and evolutionary relationships among bacterial mobile genetic elements27
Oomycete plant pathogens: biology, pathogenesis and emerging control strategies27
Insights into the assembly and regulation of the bacterial divisome26
Hyphae promote Candida albicans fitness and commensalism in the gut24
Forest microbiome and global change24
Microbiota in inflammatory bowel disease: mechanisms of disease and therapeutic opportunities23
The dynamic lung microbiome in health and disease23
Multimodal interactions of drugs, natural compounds and pollutants with the gut microbiota23
Antibiotic resistance in the environment21
The microbiome’s diet choice20
Methanogens implicated by DNA evidence19
Reaching your destination19
Putting a twist in syphilis vaccine development18
Commensals find their niche18
Alternative therapeutic strategies to treat antibiotic-resistant pathogens16
Twenty years of Nature Reviews Microbiology16
Types and functions of heterogeneity in mycobacteria16
Microbial extracellular polymeric substances in the environment, technology and medicine16
Author Correction: Ecology, evolution and spillover of coronaviruses from bats15
Machine learning sheds light on microbial dark proteins15
Clinical metagenomics for diagnosis and surveillance of viral pathogens15
Hunting archaeal viruses14
Routes of soil microbiome dispersal14
Harnessing the plant microbiome for sustainable crop production14
SARS-CoV-2 biology and host interactions14
Latent EBV gets stuck12
Fibre-deprived Akkermansia worsens food allergy12
A solution for mercury pollution?11
Gut commensals activate digestion11
RNA evolution shapes SARS-CoV-2 success10
The origins of pathogenesis10
Rise in global antibiotic use10
An amoeba and a cyanobacterium walk into a bar...10
A misplaced microbiome10
The mycobiota feeds into bacterial infections10
Chloramphenicol resistance is too hot to handle9
Achieving sustainable access to antibiotics is more than just a last mile challenge9
Fungi feed bacteria for biodegradation8
Drug delivery strategies for antibiofilm therapy8
Tackling the emerging threat of antifungal resistance to human health8
The evolution of SARS-CoV-28
Unveiling plasmid diversity in nature8
Co‐evolution of early Earth environments and microbial life8
Immune targeting of HIV-1 reservoir cells: a path to elimination strategies and cure8
Drosophila sperm sabotage by Wolbachia prophage7
Plasmid and phage lifestyles in crAssphage7
A gut microbiome-restoring diet7
Phages to the rescue7
Fitness cost of antifungal resistance7
Effects of climate change and human activities on vector-borne diseases6
Roles of the gut microbiome in weight management6
Biology and evolution of bacterial toxin–antitoxin systems6
Horizontal gene transfer and adaptive evolution in bacteria6
The HIV epidemic 40 years on6
Conservation and similarity of bacterial and eukaryotic innate immunity6
A molecular understanding of alphavirus entry and antibody protection6
Lassa fever — the road ahead6
Dispersing biofilm myths6
Beneficial applications of biofilms6
ESKAPE pathogens: antimicrobial resistance, epidemiology, clinical impact and therapeutics5
Motivation for exercise from the gut5
A new wrinkle in biofilm structure5
Mobilizing resistance genes in the human gut4
Publisher Correction: The marine nitrogen cycle: new developments and global change4
Erythrocyte invasion in malaria: from molecular mechanisms to rational vaccines4
ICSP response to ‘Science depends on nomenclature, but nomenclature is not science’4
A deadly escape4
Staphylococcus aureus gets itchy4
SURFing SARS-CoV-2 inhibition4
Author Correction: Molecular mechanisms of antibiotic resistance revisited4
Pili go with the flow4
Stopping Marburg virus in its tracks4
No viral rebound4
Cellular souvenirs in viral luggage4
Iron gatekeeper in malaria3
A kill switch for tuberculosis3
Human microbiome acquisition and transmission3
Bile acids and the gut microbiota: metabolic interactions and impacts on disease3
Black Death unravelled3
Anti-trypanosomatid drug discovery: progress and challenges3
The path of more resistance3
Clostridioides difficile pathogenesis and control3
When Helicobacter pylori spells gastric cancer3
Discovering untapped biochemistry in microorganisms from hidden corners3
A small coat for satellites3
Alternative functions of CRISPR–Cas systems in the evolutionary arms race3
Shaking up that sick feeling with biofilm sugars3
Tricking plants into starvation3
Gut bugs disrupt cancer drugs3
The gut–liver axis and gut microbiota in health and liver disease3
Degrading the matrix3
Staphylococcus epidermidis and its dual lifestyle in skin health and infection3
Inheriting traits3
Microbiota–neuroepithelial signalling across the gut–brain axis2
A phage cocktail for IBD?2
Harnessing symbiotic bacteria for disease control2
Examining the healthy human microbiome concept2
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