Comparative Biochemistry and Physiology D-Genomics & Proteomics

Article	Citations
Comprehensive analysis of hub mRNA, lncRNA and miRNA, and associated ceRNA networks implicated in cobia (Rachycentron canadum) scales under hypoosmotic adaption	23
Joint profiling of DNA methylomics and transcriptomic reveals roles of demethylation in regeneration of coelomocytes after evisceration in sea cucumber Apostichopus japonicus	22
The effects of different MT treatment methods on the ovarian transcriptome of Pampus argenteus	21
Comparative proteomic analysis of spleen reveals key immune-related proteins in the yak (Bos grunniens) at different growth stages	16
Roles and occurrences of microbiota in the osmoregulatory organs, gills and gut, in marine medaka upon hypotonic stress	15
20-Hydroxyecdysone promotes fat body lipolysis through autophagy during pupation in Apis mellifera	14
Transcriptomics, antioxidant enzyme activities, and immune-associated parameter analysis reveal the molecular responses of rainbow trout (Oncorhynchus mykiss) to transportation stress	13
Identification of microRNAs from juvenile greater amberjack (Seriola dumerili) in response to marine heatwaves	12
Chromosome-level genome assembly of the marine medaka (Oryzias melastigma) using Hi-C technology: Genomic analysis and profiling of DNA methylation for epigenetic study	12
Biochemical indices, histological observations and transcriptome sequencing reveal the response mechanism of largemouth bass (Micropterus salmoides) to transport stress	12
Comparative transcriptome analysis of juvenile greater amberjack (Seriola dumerili) revealed the molecular responses of the kidney to chronic salinity stress	11
Gastrointestinal dysbiosis induced by Nocardia sp. infection in tilapia	11
On characterizing the Red-headed Krait (Bungarus flaviceps) venom: Decomplexation proteomics, immunoreactivity and toxicity cross-neutralization by hetero-specific antivenoms	11
Silymarin mediates the gut-liver axis pathway to alleviate Carassius auratus hepatic lipid metabolism disorders caused by carbonate exposure	10
Transcriptomic analysis unveils critical genes governing early development and sex differentiation in the Cipangopaludina chinensis (Gastropoda: Viviparidae)	10
Papillae growth and molecular responses in sea cucumber (Apostichopus japonicus) exposed to light spectra	10
Diploid and triploid Chinook salmon (Oncorhynchus tshawytscha) have altered microRNA responses in immune tissues after infection with Vibrio anguillarum	10
Multi-omics reveals the molecular mechanism of muscle quality changes in common carp (Cyprinus carpio) under two aquaculture systems	10
Metabolomics and microbiome co-analysis reveals altered innate immune responses in Charybdis japonica following Aeromonas hydrophila infection	10
Deciphering multi-organ protein regulatory strategies in the Asian frog, Pelophylax nigromaculatus during hibernation to elucidate energy homeostasis maintenance mechanisms	9
Effects of Spirulina platensis as a substitute for fishmeal on the liver of zig-zag eel (Mastacembelus armatus) infected with Aeromonas hydrophila	9
Comparative miRNA transcriptome analysis reveals miR-375-3p targets cyp19a and regulates ovarian development in Medaka (Oryzias latipes)	9
Diet-driven transcriptional changes in weaning red abalone (Haliotis rufescens) and its hybrid (H. rufescens [♀] x H. fulgens [♂])	9
Skin mucus proteomic provides insights into the alkaline tolerance of grass carp (Ctenopharyngodon idella)	8
Comparative transcriptome analysis reveals physiological responses in liver tissues of Epinephelus coioides under acute hypoxia stress	8

Transcriptional atlas of Daphnia magna	8
Transcriptome analysis and screening of putative sex-determining genes in the invasive pest, Frankliniella occidentalis (Thysanoptera: Thripidae)	8
Harnessing genomics for identifying disease-resistant eels: Advances, applications, and sustainable aquaculture	8
A novel indel-based molecular sex identification system for oplegnathus fasciatus: Insights from ndc80 gene polymorphisms and aquaculture applications	8
Hepatic transcriptome analysis reveals the metabolic strategies of largemouth bass (Micropterus salmoides) under different dissolved oxygen condition	8
Transcriptomic analysis reveals the survival strategies of Mytilus coruscus under short-term rising seawater temperatures	8
Transcriptomic signatures associated with developmental transitions in the gill of lake sturgeon (Acipenser fulvescens)	7
Key lncRNA-mRNA networks regulated by Polyascus sp. infection: A comparative transcriptomic analysis of the eyestalk in the Eriocheir sinensis	7
Metabonomic and microbiomic analysis reveals the effect of sargassum enzyme hydrolysate compound fish protein hydrolysate on the intestinal health in Pacific white shrimp (Penaeus vannamei)	7
Transcriptome analysis reveals the potential mechanism of plateau environment on muscle growth and development in yak	7
Heat stress induces pathological and molecular responses in the gills of largemouth bass (Micropterus salmoides) revealed by histology, transcriptomics, and DNA methylomics	7
Quercetin enhances antioxidant capacity and reproductive performance in daphnia pulex	7
Transcriptomic and proteomic insights into the growth-promoting mechanisms of dietary γ-aminobutyric acid (GABA) in tawny puffer (Takifugu flavidus)	7
Genome-wide analyses of Glutathione S-transferase gene family and expression profiling under deltamethrin exposure in non-biting midge Propsilocerus akamusi	7
Short-term and persistent changes to the muscle transcriptome of Lake sturgeon (Acipenser fulvescens) following early-life exposures to elevated temperatures	7
Transcriptomic analysis reveals stage-specific cholesterol metabolism and steroidogenic in theca layer cells during follicular development in chickens	7
Multi-omics analysis reveals the cerebral sex-specific responses to chronic hypoxia in yellow catfish (Pelteobagrus fulvidraco)	7
Evolution of the sex-determination gene Doublesex within the termite lineage	7
Beyond opioid and SNRI-like actions: Proteomic insights into the effects of tramadol and O-desmethyltramadol in zebrafish larvae	6
Corrigendum to “Transcriptome analysis reveals the involvement of ubiquitin-proteasome pathway in the regulation of muscle growth of rice flower carp” [Comp. Biochem. Physiol. Part D Genomics Proteomi	6
16S rRNA gene sequencing analysis reveals an imbalance in the intestinal flora of Eriocheir sinensis with hepatopancreatic necrosis disease	6
New insights into the role of solute carriers in response to salinity stress in the Manila clam (Ruditapes philippinarum)	6
Transcriptomic analysis of post-mating neural reprogramming and its coordinated control of ovarian development in the mud crab Scylla paramamosain	6
Identification of candidate leg chemosensory genes associated with nursing behavior in the Apis mellifera	6
Sex-bias of core intestinal microbiota in different stocks of Chinese mitten crabs (Eriocheir sinensis)	6
Transcriptomic analyses reveals a diverse venom composition in Agelena limbata (Araneae: Agelenaidae)	6
Transcriptomic analysis of the effect of dietary melatonin on liver immunity in rice field eel (Monopterus albus)	6
Alterations in captive Alexandrine parakeet (Palaeornis eupatria) gut microbiome and metabolome in response to dietary change	6
Effects of low salinity stress on the taurine metabolism and transport in the Iwagaki oyster Crassostrea nippona	6
De novo assembly, characterization and comparative transcriptome analysis of gonads reveals sex-biased genes in Coreoperca whiteheadi	6
Peptidomic analysis of the host-defense peptides in skin secretions of the Amazon River frog Lithobates palmipes (Ranidae)	6
Changes in transcriptome regulations of a marine rotifer Brachionus plicatilis under methylmercury stress	6
Integrated transcriptomic and proteomic analysis of hepatopancreatic pathological changes in Eriocheir sinensis affected by hepatopancreatic necrosis disease	6
Dietary steroids promote body weight growth and induce gametogenesis by increasing the expressions of genes related to cell proliferation of sea cucumber (Apostichopus japonicus)	6
Transcriptome analysis reveals the immune response mechanism of golden cuttlefish (Sepia esculenta) larvae exposed to ink	6
Comparative analysis of intestinal structure, enzyme activity, intestinal microbiota and gene expression in different segments of pufferfish (Takifugu Obscurus)	6
Integrated multi-omics analysis and RNAi reveal Toll signaling pathway and melanization as key defenses in Ostrinia furnacalis against Meteorus pulchricornis parasitism	6
Identification and functional analysis of miRNAs in skeletal muscle of juvenile and adult largemouth bass, Micropterus salmoides	6
Transcriptome analysis and expression profiles of odorant binding proteins and chemosensory proteins in Orius sauteri	5
Transcriptomic impacts and potential routes of detoxification in a lampricide-tolerant teleost exposed to TFM and niclosamide	5
Transforming growth factor-beta gene family in Labeo rohita: Genome-wide molecular characterization and phylogenetic relationship with other vertebrates	5
Effects of low temperature air exposure and immersion on antioxidant, immune, intestinal flora and metabolome of Chinese mitten crab (Eriocheir sinensis)	5
Identification of key lncRNAs and mRNAs in muscle development pathways of Tan sheep	5
Molecular mechanisms of kidney-mediated salinity adaptation in Takifugu obscurus, T. rubripes and their hybrid offspring	5
Effects of environmentally relevant concentrations of glyphosate and aminomethylphosphonic acid on biotransformation and stress response proteins in the liver of zebrafish (Danio rerio)	5
Genome-wide analyses of glutathione S-transferase gene family and expression profiling among three haplotypes Aphis gossypii	5
Functional verification of a landmark gene EVM713 involved in spermatogenesis in the marine bivalve Chlamys nobilis	5
Sex dependent transcriptome responses of the diamondback moth, Plutella xylostella L. to cold stress	5
Investigating imidacloprid resistance in Amrasca biguttula biguttula (Ishida) (Hemiptera: Cicadellidae): Insights from RNA-Seq and functional validation using RT-qPCR	5
Transcriptomic WGCNA analyses reveal sectional regulatory mechanisms in giant freshwater prawn Macrobrachium rosenbergii larvae under hypoxia-reoxygenation	5

Transcriptome profiles revealed high- and low-salinity water altered gill homeostasis in half-smooth tongue sole (Cynoglossus semilaevis)	5
Identification of the changes of immune response, morphology, and gene expressions in hepatopancreas of Macrobrachium nipponense under the treatment of alkalinity exposure	5
Comparative proteomics elucidates the potential mechanism of heritable carapace color of three strains Chinese mitten crab Eriocheir sinensis	5
Comparative transcriptome analysis reveals the different responding mechanisms of ovary and hepatopancreas following polyI:C challenge in Macrobrachium nipponense	5
Circular RNA transcriptome across various development periods of Paralichthys olivaceus reveal skeletal muscle-specific circchd6 regulating myogenesis	5
Identification and characterization of circadian clock genes in the head transcriptome of Conopomorpha sinensis Bradley	5
The dynamic transcriptomic response of the goldfish brain under chronic hypoxia	5
Genome-wide analysis reveals the evolutionary history of TAG intracellular lipases and their roles in different molting stages of Decapods	5
Acute injury of liver in hybrid groupers (Epinephelus lanceolatus ♂ × Epinephelus fuscoguttatus ♀) under high-dose Edwardsiella ictaluri infection	5
Gene family expansion analysis and identification of the histone family in Spodoptera frugiperda	5
Transcriptomic analysis of the gill and hepatopancreas reveals the thermal adaptation mechanisms of Eriocheir sinensis	5
Neuroendocrine transcriptomics in Eriocheir sinensis: Photoperiod-induced modulation of gonadal development and circadian clock genes in neural tissues	5
Genome-wide identification of 194 G protein-coupled receptor (GPCR) genes from the water flea Daphnia magna	5
Key neuropeptide and neuroendocrine pathways of the optic lobe are affected by high temperatures in the female Octopus maya	5
Comparative transcriptomics reveals the conservation and divergence of reproductive genes across three sympatric Tomicus bark beetles	5
Comparative transcriptome analysis reveals key genes and pathways related to gonad development in the sea cucumber Apostichopus japonicus	5
Editorial Board	5
Editorial Board	5
Papillae growth and molecular responses of juvenile sea cucumbers (Apostichopus japonicus) exposed to different light intensities	5
Transcriptional and metabolomic investigation of the stress response in snow crab during simulated transport condition (Chionoecetes opilio)	5
Gonadal transcriptome profiling via RNA-seq during temperature-dependent sex determination and differentiation in the red-eared slider (Trachemys scripta elegans)	5
Weighted correlation network analysis of the genes in the eyes of juvenile Plectropomus leopardus provide novel insights into the molecular mechanisms of the adaptation to the background color	5
Incorporation of microgastropoda species provides novel insights into phylogeny of Trochoidea (Gastropoda: Vetigastropoda)	4
Proteomic analysis of hepatic fibrosis induced by a high starch diet in largemouth bass (Micropterus salmoides)	4
The haplotype-resolved chromosome-level genome assembly of Spinibarbus caldwelli provides insights into environmental adaptability and disease resistance	4
Dietary supplementation of selenium nanoparticle improves the vitellogenesis and fecundity of female zebrafish	4
Neighbours matter: Effects of genomic organization on gene expression plasticity in response to environmental stresses during biological invasions	4
The tricarboxylic acid cycle is inhibited under acute stress from carbonate alkalinity in the gills of Eriocheir sinensis	4
Transcriptome variation in banded newt (Ommatotriton vittatus) during its life cycle and habitat transition	4
TMT-based proteomics analysis of sea urchin (Strongylocentrotus intermedius) under high temperature stress	4
Identification of sex-related genes across bivalves reveals key genes in gonad development and sex reversal	4
MicroRNA-mediated regulation in anoxic Lithobates sylvaticus liver	4
Integrative analysis of transcriptomics and gut microbiome in grass carp under alkalinity stress	4
Integrative analysis of FOX genes in fish: Evolution, structure, and functional roles in environmental stress tolerance and growth regulation in Mugil cephalus	4
Changes in the gut bacterial community affect miRNA profiles in Riptortus pedestris under different rearing conditions	4
Effects of low temperature on intestinal microbiota composition of silver pomfret (Pampus argenteus)	4
Comparative transcriptome analysis for identifying genes involved in reproduction of banana shrimp (Penaeus merguiensis)	4
Genome-wide identification and expression profiles of sex-related gene families in the Pacific abalone Haliotis discus hannai	4
Transcriptome analysis reveals intestinal gene expression and metabolic pathways in yaks	4
Investigating the lipid profile of Anopheles stephensi mosquitoes across developmental life stages	4
The toggle switch model for gene expression change during duck skeletal muscle development	4
The energy metabolism and transcriptomic responses of the Manila clam (Ruditapes philippinarum) under the low-temperature stress	4
The physiological and transcriptional differences between golden and brown noble scallops Chlamys nobilis	4
Lipid droplets play versatile roles in ovarian development of the razor clam Sinonovacula constricta: Insights from proteomic and lipidomic analyses	4
Editorial Board	4
Comparative skin histological and transcriptomic analysis of Rana kukunoris with two different skin colors	4
A comprehensive overview of ovarian small non-coding RNAs in the late overwintering and breeding periods of Onychostoma macrolepis	4
Editorial Board	4
Effects of myo-inositol on growth and biomarkers of environmental stress and metabolic regulation in Pacific white shrimp (Litopenaeus vannamei) reared at low salinity	4
Integrated analysis of transcriptome and proteome for exploring mechanism of promoting proliferation of equine satellite cells associated with leucine	4
Preliminary analysis of pathways and their implications during salinity stress in abalone	4
RNA-seq analysis of the differential response to low-temperature stress in two morphs of mud crabs (Scylla paramamosain)	4
Decreased acetylation of HDGF improves oviduct production in Rana dybowskii, Rana amurensis, and Rana huanrenensis	4
Transcriptome analysis and exploration of immune key genes of hepatopancreas after Poly(I:C) stimulation in Amphioctopus fangsiao	4
Omics-driven insight into physiological responses of species in aquaculture	4
Association analysis reveals SNP markers associated with growth traits in swimming crabs (Portunus trituberculatus)	4
Comparative analysis of different Phyllostachys species on gut microbiome and fecal metabolome in giant pandas (Ailuropoda melanoleuca)	4
An integrated transcriptome, proteome and targeted metabolome analysis reveals genes and steroids related to gonadal development in Ruditapes philippinarum	4
Using proteomics, q-PCR and biochemical methods complementing as a multiapproach to elicit the crucial responses of zebrafish liver exposed to neonicotinoid pesticide	3
Transcriptomics reveals different response mechanisms of Litopenaeus vannamei hemocytes to injection of Vibrio parahaemolyticus and WSSV	3
Comparative analysis of gut microbiota-mediated bile acid profiles in Bufo gargarizans and Rana chensinensis tadpoles	3
Exosomes serve as a crucial mediator of epithelial–fibroblast communication during hair follicle morphogenesis in cashmere goats	3
Transcriptomic insights into vibrio-induced mortality in the clam Meretrix petechialis under high temperature	3
Synergistic integration of transcriptomics and metabolomics analyses provides novel insights into the mechanisms underlying unsynchronized growth of greater amberjack (Seriola dumerili)	3
Weighted gene co-expression network analysis of embryos and first instar larvae of the horseshoe crab Tachypleus tridentatus uncovers development gene networks	3
Comprehensive analysis of Sox genes in the Pacific oyster (Crassostrea gigas): Insights into expression and potential functions	3
Comparative identification, characterization and high-temperature stress analysis of the fatty acid-binding protein (fabp) genes in largemouth bass (Micropterus salmoides) genome	3
Whole-genome identification of SOD gene family revealed the expansion of SOD in Chinese mitten crab, Eriocheir sinensis	3
Methylosome protein 50 is necessary for oogenesis in medaka	3
Proteomic analysis reveals immune-related proteins of coelomic fluid in Urechis unicinctus	3
Comparative transcriptome analysis reveals molecular mechanisms of the effects of light intensity and photoperiod on ovarian development in Procambarus clarkii (Girard, 1852)	3
Identification of hub genes in digestive system of mandarin fish (Siniperca chuatsi) fed with artificial diet by weighted gene co-expression network analysis	3
Functional insights of digestion, absorption, and immunity in different segments of the intestine in Hemibarbus labeo from transcriptomic analysis	3
Comparative mitogenomic analyses of the infraclass Pteriomorphia (Mollusca: Bivalvia) provides novel insights into gene rearrangement and phylogeny	3
Screening for IBs-relative genes by transcriptome analysis and generation IBs-less mutants in Culter alburnus	3
High levels of sinigrin trigger synthesis of fatty acids in Plutella xylostella (L.)	3
De novo gonad transcriptome analysis of elongate loach (Leptobotia elongata) provides novel insights into sex-related genes	3
Identification of sex-specific splicing via comparative transcriptome analysis of gonads from sea cucumber Apostichopus japonicus	3
Transcriptome analysis reveals molecular mechanism of Dosinia corrugata in response to acute heat stress	3
Multi-organ transcriptomics provide insights into growth regulation in the Dongtingking crucian carp (Carassius auratus indigentiaus)	3

Exploring symbiont gene expression in two echinoid-associated shrimp species under host separation	3
Transcriptomic and metabolomic analyses provide insights into the energy metabolism and signaling regulation of byssus secretion in winged pearl oyster Pteria penguin	3
Liver transcriptome analysis reveals genes and pathways involved in the ovarian development in spotted scat (Scatophagus argus)	3
Transcriptome analysis and machine learning methods reveal potential mechanisms of zebrafish muscle aging	3
Transcriptome sequencing reveals improved ammonia nitrogen tolerance in Zebra II strain of the Manila clam Ruditapes philippinarum	3
Transcriptome profiling of triploid Crassostrea gigas gills indicates the host immune mechanism against bacterial infection	3
Adaptive mitochondrial genome functioning in ecologically different farm-impacted natural seedbeds of the endemic blue mussel Mytilus chilensis	3
Comprehensive analysis of small non-coding RNAs in the liver of Onychostoma macrolepis during overwintering and non-overwintering periods provides insights into the metabolic mechanisms of fish overwi	3
Combined transcriptome and metabolome analysis reveals the mechanism of high nitrite tolerance in freshwater mussel Anodonta woodiana	3
Proteomic responses to progressive dehydration and rehydration in Xenopus laevis	3
Biomineralization in a cold environment: Insights from shield compositions and transcriptomics of polar sternaspids (Sternaspidae, Polychaeta)	3
Changes in histone abundance and post-translational modifications in Rana [Lithobates] catesbeiana tissues during temperature-mediated thyroid hormone-induced metamorphosis	3
Genome-wide identification, docking and expression analysis of ATP-binding cassette gene family of Parnara guttata, a major rice pest (Insecta: Lepidoptera: Hesperiidae)	3
Effects of replacing fishmeal with different proportions of mixed protein source in the diet of largemouth bass (Micropterus salmoides)	3
Liquid chromatography-mass spectrometry based metabolomics investigation of different tissues of Mytilus galloprovincialis	3
Atlantic sturgeon and shortnose sturgeon exhibit highly divergent transcriptomic responses to acute heat stress	3
Integrated gut microbiota and multi-omics analysis revealed the growth differences of female giant freshwater prawn (Macrobrachium rosenbergii)	3
Apoptosis, MAPK signaling pathway affected in tilapia liver following nano-microplastics and sulfamethoxazole acute co-exposure	3
Molecular insights into oocyte development and sperm storage in black rockfish (Sebastes schlegelii): Proteomic changes across reproductive stages	3
Identification of key overlapping DEGs and molecular pathways under multiple stressors in the liver of Nile tilapia (Oreochromis niloticus)	3
Regulation mechanism of endochondral ossification in Rana zhenhaiensis during metamorphosis based on histomorphology and transcriptome analyses	3
Transcriptome analyses reveal differentially expressed genes associated with development of the palatal organ in bighead carp (Hypophthalmichthys nobilis)	3
Investigating the molecular basis of cleptobiosis in eusocial stingless bees (Apidae: Hymenoptera)	3
Effects of temperature on metamorphosis and endochondral ossification in Rana chensinensis tadpoles	3
Pyraclostrobin-induced toxic effects in the gills of common carp (Cyprinus carpio L.): Mechanisms unveiled through biochemical, molecular, and metabolomic analyses	3
Transcriptome analysis provides new insight into the mechanism of Bombyx mori under zinc exposure	3
Expression analysis of alpha keratins and corneous beta-protein genes during embryonic development of Gekko japonicus	3
Molecular responses of paddy field carp (Cyprinus carpio) in the agricultural heritage to major environmental factors in paddy fields	3
Transcriptome analysis of the moso bamboo pest, Hippotiscus dorsalis, reveals differentially expressed unigenes across various tissues	3
Genome-wide analysis of the cytochrome P450 gene family in Pacific oyster Crassostrea gigas and their expression profiles during gonad development	3
Structural evolution of an amphibian-specific globin: A computational evolutionary biochemistry approach	3
Comprehensive analysis of lncRNA and mRNA expression in triploid rainbow trout (Oncorhynchus mykiss) liver in response to chronic hypoxia	3
Proteomic profiling of Ruditapes philippinarum gills exposed to triazophos: Insights into oxidative stress, cytoskeletal alterations, protein homeostasis and energy metabolism enhancement	3
Post-prandial response in hepatopancreas and haemolymph of Penaeus monodon fed different diets. Omics insights into glycoconjugate metabolism, energy utilisation, chitin biosynthesis, immune function,	3
Whole transcriptomic analysis reveals the lncRNA-miRNA-mRNA regulatory mechanism underlying the heat-hardening formation in Mytilus coruscus	3
Toxic effects of trichlorfon on the hepatopancreas of Chinese mitten crab (Eriocheir sinensis): Tissue damage, oxidative stress, and Ferroptosis	3
Evolution of the animal globin superfamily: Insights from the blood clam Anadara granosa	3
Transcriptomic evidence indicates that montane leaf beetles prioritize digestion and reproduction in a sex-specific manner during emergence from dormancy	3
Insights into sequence characteristics and evolutionary history of DGATs in arthropods	3
Cys-loop ligand-gated ion channel superfamily of Pardosa pseudoannulata: Implication for natural enemy safety	3
Integrated transcriptomic and lipidomic analysis reveals that arachidonic acid mediates the allograft-induced stress response in Pinctada fucata martensii	3
Microgeographic variation in gene expression plasticity under osmotic stress in wild eastern oyster juveniles (Crassostrea virginica)	3