Comparative Biochemistry and Physiology D-Genomics & Proteomics

Article	Citations
On characterizing the Red-headed Krait (Bungarus flaviceps) venom: Decomplexation proteomics, immunoreactivity and toxicity cross-neutralization by hetero-specific antivenoms	31
Comprehensive analysis of hub mRNA, lncRNA and miRNA, and associated ceRNA networks implicated in cobia (Rachycentron canadum) scales under hypoosmotic adaption	22
Comparative proteomics elucidates the dynamics of ovarian development in the Chinese mitten crab Eriocheir sinensis	21
Multi-omics reveals the molecular mechanism of muscle quality changes in common carp (Cyprinus carpio) under two aquaculture systems	18
Gastrointestinal dysbiosis induced by Nocardia sp. infection in tilapia	17
Roles and occurrences of microbiota in the osmoregulatory organs, gills and gut, in marine medaka upon hypotonic stress	16
Transcriptomic analysis unveils critical genes governing early development and sex differentiation in the Cipangopaludina chinensis (Gastropoda: Viviparidae)	15
Effect of creatine and EDTA supplemented diets on European seabass (Dicentrarchus labrax) allergenicity, fish muscle quality and omics fingerprint	15
Comparative proteomic analysis of spleen reveals key immune-related proteins in the yak (Bos grunniens) at different growth stages	15
Metabolomics and microbiome co-analysis reveals altered innate immune responses in Charybdis japonica following Aeromonas hydrophila infection	14
Hepatic transcriptome analysis reveals the metabolic strategies of largemouth bass (Micropterus salmoides) under different dissolved oxygen condition	14
Deficiency of interleukin-17 receptor A1 induces microbiota disruption in the intestine of Japanese medaka, Oryzias latipes	13
Behavioral and hypothalamic transcriptome analyses reveal sex-specific responses to phenanthrene exposure in the fathead minnow (Pimephales promelas)	12
Transcriptome analysis and screening of putative sex-determining genes in the invasive pest, Frankliniella occidentalis (Thysanoptera: Thripidae)	12
Genome-wide analyses of Glutathione S-transferase gene family and expression profiling under deltamethrin exposure in non-biting midge Propsilocerus akamusi	11
Sex bias miRNAs in Cynoglossus semilaevis could play a role in transgenerational inheritance	11
Transcriptomic and proteomic analysis of the underlying mechanisms of digestion of triacylglycerols and phosphatides and absorption and fate of fatty acids along the midgut of Musca domestica	11
Diploid and triploid Chinook salmon (Oncorhynchus tshawytscha) have altered microRNA responses in immune tissues after infection with Vibrio anguillarum	11
Comparative transcriptome analysis reveals physiological responses in liver tissues of Epinephelus coioides under acute hypoxia stress	10
Transcriptome analysis reveals the potential mechanism of plateau environment on muscle growth and development in yak	10
Evolution of the sex-determination gene Doublesex within the termite lineage	10
Multi-omics analysis reveals the cerebral sex-specific responses to chronic hypoxia in yellow catfish (Pelteobagrus fulvidraco)	10
Identification of important proteins from the gonads and pituitary involved in the gonad development of Amur sturgeon, Acipenser schrenckii, regulated by GnRH-a treatment by iTRAQ-based analysis	10
Sex-bias of core intestinal microbiota in different stocks of Chinese mitten crabs (Eriocheir sinensis)	10
Identification and functional analysis of miRNAs in skeletal muscle of juvenile and adult largemouth bass, Micropterus salmoides	9

Transcriptomic impacts and potential routes of detoxification in a lampricide-tolerant teleost exposed to TFM and niclosamide	9
Functional verification of a landmark gene EVM713 involved in spermatogenesis in the marine bivalve Chlamys nobilis	9
Peptidomic analysis of the host-defense peptides in skin secretions of the Amazon River frog Lithobates palmipes (Ranidae)	9
Transcriptomic analyses reveals a diverse venom composition in Agelena limbata (Araneae: Agelenaidae)	9
Alterations in captive Alexandrine parakeet (Palaeornis eupatria) gut microbiome and metabolome in response to dietary change	9
Dietary steroids promote body weight growth and induce gametogenesis by increasing the expressions of genes related to cell proliferation of sea cucumber (Apostichopus japonicus)	9
Transcriptional and metabolomic investigation of the stress response in snow crab during simulated transport condition (Chionoecetes opilio)	9
Editorial Board	8
Genome-wide identification of 194 G protein-coupled receptor (GPCR) genes from the water flea Daphnia magna	8
Genome-wide analysis reveals the evolutionary history of TAG intracellular lipases and their roles in different molting stages of Decapods	8
Identification and expression profiling of chemosensory membrane protein genes in Achelura yunnanensis (Lepidoptera: Zygaenidae)	8
Transcriptome analysis and expression profiles of odorant binding proteins and chemosensory proteins in Orius sauteri	8
16S rRNA gene sequencing analysis reveals an imbalance in the intestinal flora of Eriocheir sinensis with hepatopancreatic necrosis disease	8
Changes in transcriptome regulations of a marine rotifer Brachionus plicatilis under methylmercury stress	8
Comparative analysis of intestinal structure, enzyme activity, intestinal microbiota and gene expression in different segments of pufferfish (Takifugu Obscurus)	7
Identification and characterization of circadian clock genes in the head transcriptome of Conopomorpha sinensis Bradley	7
Transcriptome analysis reveals the immune response mechanism of golden cuttlefish (Sepia esculenta) larvae exposed to ink	7
Effects of environmentally relevant concentrations of glyphosate and aminomethylphosphonic acid on biotransformation and stress response proteins in the liver of zebrafish (Danio rerio)	7
Sex dependent transcriptome responses of the diamondback moth, Plutella xylostella L. to cold stress	7
De novo assembly, characterization and comparative transcriptome analysis of gonads reveals sex-biased genes in Coreoperca whiteheadi	7
Gene family expansion analysis and identification of the histone family in Spodoptera frugiperda	7
Weighted correlation network analysis of the genes in the eyes of juvenile Plectropomus leopardus provide novel insights into the molecular mechanisms of the adaptation to the background color	7
Expression profiling and functional characterization of the duplicated Oxr1b gene in zebrafish	7
Comparative transcriptome analysis reveals key genes and pathways related to gonad development in the sea cucumber Apostichopus japonicus	7
Genome-wide analyses of glutathione S-transferase gene family and expression profiling among three haplotypes Aphis gossypii	7
Corrigendum to “Transcriptome analysis reveals the involvement of ubiquitin-proteasome pathway in the regulation of muscle growth of rice flower carp” [Comp. Biochem. Physiol. Part D Genomics Proteomi	7
Comparative lipidomics profiling of the sea urchin, Strongylocentrotus intermedius	7
Comparative transcriptome analysis reveals the different responding mechanisms of ovary and hepatopancreas following polyI:C challenge in Macrobrachium nipponense	7
Effects of low temperature air exposure and immersion on antioxidant, immune, intestinal flora and metabolome of Chinese mitten crab (Eriocheir sinensis)	7
The complete mitochondrial genome of Trifida elongate and comparative analysis of 43 leafhoppers	6
Comparative proteomics elucidates the potential mechanism of heritable carapace color of three strains Chinese mitten crab Eriocheir sinensis	6
TMT-based proteomics analysis of sea urchin (Strongylocentrotus intermedius) under high temperature stress	6
RNA-Seq analysis of the blue light-emitting Orfelia fultoni (Diptera: Keroplatidae) suggest photoecological adaptations at the molecular level	6
Preliminary analysis of pathways and their implications during salinity stress in abalone	6
Decreased acetylation of HDGF improves oviduct production in Rana dybowskii, Rana amurensis, and Rana huanrenensis	6
Investigating the lipid profile of Anopheles stephensi mosquitoes across developmental life stages	6
Transcriptome profiles revealed high- and low-salinity water altered gill homeostasis in half-smooth tongue sole (Cynoglossus semilaevis)	6
The linkage of cell cycle and DNA replication with growth difference in female Chinese tongue sole (Cynoglossus semilaevis): Analysis from transcriptomic study and WGCNA	6
Comparative transcriptomics reveals the conservation and divergence of reproductive genes across three sympatric Tomicus bark beetles	6
Integrated analysis of transcriptome and proteome for exploring mechanism of promoting proliferation of equine satellite cells associated with leucine	6
Neighbours matter: Effects of genomic organization on gene expression plasticity in response to environmental stresses during biological invasions	6
The dynamic transcriptomic response of the goldfish brain under chronic hypoxia	6
The energy metabolism and transcriptomic responses of the Manila clam (Ruditapes philippinarum) under the low-temperature stress	6
Editorial Board	6
Omics-driven insight into physiological responses of species in aquaculture	6
Transcriptome variation in banded newt (Ommatotriton vittatus) during its life cycle and habitat transition	6
Dynamic expression and functional analysis of circular RNA in the gonads of Chinese soft-shelled turtles (Pelodiscus sinensis)	6
Identification of chemosensory genes by antennal transcriptome analysis and expression profiles of odorant-binding proteins in parasitoid wasp Aulacocentrum confusum	6
Genome-wide identification and expression profiles of sex-related gene families in the Pacific abalone Haliotis discus hannai	6
Identification of key lncRNAs and mRNAs in muscle development pathways of Tan sheep	6

A comprehensive overview of ovarian small non-coding RNAs in the late overwintering and breeding periods of Onychostoma macrolepis	5
Proteomic analysis of hepatic fibrosis induced by a high starch diet in largemouth bass (Micropterus salmoides)	5
Integrated transcriptomic and proteomic analysis of the physiological changes of the liver in domesticated Eurasian perch, Perca fluviatilis	5
High levels of sinigrin trigger synthesis of fatty acids in Plutella xylostella (L.)	5
RNA-seq analysis of gene expression changes in cuticles during the larval-pupal metamorphosis of Plutella xylostella	5
Comparative transcriptome analysis reveals a potential mechanism for host nutritional manipulation after parasitization by Leptopilina boulardi	5
Exosomes serve as a crucial mediator of epithelial–fibroblast communication during hair follicle morphogenesis in cashmere goats	5
Apoptosis, MAPK signaling pathway affected in tilapia liver following nano-microplastics and sulfamethoxazole acute co-exposure	5
Comparative skin histological and transcriptomic analysis of Rana kukunoris with two different skin colors	5
Weighted gene co-expression network analysis of embryos and first instar larvae of the horseshoe crab Tachypleus tridentatus uncovers development gene networks	5
The tricarboxylic acid cycle is inhibited under acute stress from carbonate alkalinity in the gills of Eriocheir sinensis	5
Transcriptome analysis reveals molecular mechanism of Dosinia corrugata in response to acute heat stress	5
RNA-seq analysis of the differential response to low-temperature stress in two morphs of mud crabs (Scylla paramamosain)	5
Expression analysis of alpha keratins and corneous beta-protein genes during embryonic development of Gekko japonicus	5
Editorial Board	5
The mantle exosome proteins of Hyriopsis cumingii participate in shell and nacre color formation	5
Effects of myo-inositol on growth and biomarkers of environmental stress and metabolic regulation in Pacific white shrimp (Litopenaeus vannamei) reared at low salinity	5
Integrated transcriptomic and lipidomic analysis reveals that arachidonic acid mediates the allograft-induced stress response in Pinctada fucata martensii	5
Incorporation of microgastropoda species provides novel insights into phylogeny of Trochoidea (Gastropoda: Vetigastropoda)	5
Transcriptomic and metabolomic analyses provide insights into the energy metabolism and signaling regulation of byssus secretion in winged pearl oyster Pteria penguin	5
Changes in the gut bacterial community affect miRNA profiles in Riptortus pedestris under different rearing conditions	5
Exploring symbiont gene expression in two echinoid-associated shrimp species under host separation	5
Transcriptome sequencing reveals improved ammonia nitrogen tolerance in Zebra II strain of the Manila clam Ruditapes philippinarum	4
Coordinated transcriptomics and peptidomics of central nervous system identify neuropeptides and their G protein-coupled receptors in the oriental fruit moth Grapholita molesta	4
Metabolite profiling of the post-ovulatory oocytes of the common carp, Cyprinus carpio: A 1H NMR-based metabolomics approach	4
Cys-loop ligand-gated ion channel superfamily of Pardosa pseudoannulata: Implication for natural enemy safety	4
Pyraclostrobin-induced toxic effects in the gills of common carp (Cyprinus carpio L.): Mechanisms unveiled through biochemical, molecular, and metabolomic analyses	4
Regulation mechanism of endochondral ossification in Rana zhenhaiensis during metamorphosis based on histomorphology and transcriptome analyses	4
Transcriptome analyses reveal differentially expressed genes associated with development of the palatal organ in bighead carp (Hypophthalmichthys nobilis)	4
Transcriptome analysis reveals the involvement of ubiquitin-proteasome pathway in the regulation of muscle growth of rice flower carp	4
Transcriptomic insights into vibrio-induced mortality in the clam Meretrix petechialis under high temperature	4
Snake venom proteomics and antivenomics of two Sundaic lance-headed pit vipers: Trimeresurus wiroti (Malaysia) and Trimeresurus puniceus (Indonesia)	4
Distinct skin morphological and transcriptomic profiles between wild and albino Oscar Astronotus ocellatus	4
Identification of key overlapping DEGs and molecular pathways under multiple stressors in the liver of Nile tilapia (Oreochromis niloticus)	4
Transcriptomics reveals different response mechanisms of Litopenaeus vannamei hemocytes to injection of Vibrio parahaemolyticus and WSSV	4
Molecular responses of paddy field carp (Cyprinus carpio) in the agricultural heritage to major environmental factors in paddy fields	4
Transcriptome analysis of the moso bamboo pest, Hippotiscus dorsalis, reveals differentially expressed unigenes across various tissues	4
Molecular insights into oocyte development and sperm storage in black rockfish (Sebastes schlegelii): Proteomic changes across reproductive stages	4
Effects of replacing fishmeal with different proportions of mixed protein source in the diet of largemouth bass (Micropterus salmoides)	4
Genome-wide analysis of the cytochrome P450 gene family in Pacific oyster Crassostrea gigas and their expression profiles during gonad development	4
Effects of temperature on metamorphosis and endochondral ossification in Rana chensinensis tadpoles	4
Insights into sequence characteristics and evolutionary history of DGATs in arthropods	4
Identification of sex-specific splicing via comparative transcriptome analysis of gonads from sea cucumber Apostichopus japonicus	4
Identification of hub genes in digestive system of mandarin fish (Siniperca chuatsi) fed with artificial diet by weighted gene co-expression network analysis	4
Adaptive mitochondrial genome functioning in ecologically different farm-impacted natural seedbeds of the endemic blue mussel Mytilus chilensis	4
Synergistic integration of transcriptomics and metabolomics analyses provides novel insights into the mechanisms underlying unsynchronized growth of greater amberjack (Seriola dumerili)	4
Dietary jellyfish affect digestive enzyme activities and gut microbiota of Pampus argenteus	4
Post-prandial response in hepatopancreas and haemolymph of Penaeus monodon fed different diets. Omics insights into glycoconjugate metabolism, energy utilisation, chitin biosynthesis, immune function,	4
Comparative mitogenomic analyses of the infraclass Pteriomorphia (Mollusca: Bivalvia) provides novel insights into gene rearrangement and phylogeny	4
Using proteomics, q-PCR and biochemical methods complementing as a multiapproach to elicit the crucial responses of zebrafish liver exposed to neonicotinoid pesticide	4
Atlantic sturgeon and shortnose sturgeon exhibit highly divergent transcriptomic responses to acute heat stress	4
Comparative transcriptome elucidates key genes and pathways related to golden phenotype of Crassostrea gigas	3
Transcriptomics-based analysis of Macrobrachium rosenbergii growth retardation	3
Utilization of temperature-mediated activation of thyroid hormone-induced molecular memory to evaluate early signaling events in the olfactory epithelium of Rana [Lithobates] catesbeiana tadpoles	3
Identification and expression characteristics of putative chemosensory proteins in the peach fruit borer Carposina sasakii Matsumura (Lepidoptera: Carposinidae)	3
FHL3 gene regulates bovine skeletal muscle cell growth through the PI3K/Akt/mTOR signaling pathway	3
Effects of enrofloxacin's exposure on the gut microbiota of Tilapia fish (Oreochromis niloticus)	3
Transcriptome profiling revealed the growth superiority of hybrid pufferfish derived from Takifugu obscurus ♀ × Takifugu rubripes ♂	3
Proteomics analysis of differentially abundant proteins in the rohu kidney infected with Edwardsiella tarda	3
Functional insights of digestion, absorption, and immunity in different segments of the intestine in Hemibarbus labeo from transcriptomic analysis	3
Whole transcriptome analysis identifies differentially expressed mRNA, miRNA and lncRNA associated with male sterility in the silkworm, Bombyx mori	3
Changes of mRNA, miRNA and lncRNA expression contributing to skeletal muscle differences between fetus and adult Mongolian horses	3
Transcriptomic evidence indicates that montane leaf beetles prioritize digestion and reproduction in a sex-specific manner during emergence from dormancy	3
Ocean warming and acidification alter calcification and innate immune system gene expression in juvenile American lobsters, Homarus americanus	3
Proteomic analysis reveals immune-related proteins of coelomic fluid in Urechis unicinctus	3
De novo gonad transcriptome analysis of elongate loach (Leptobotia elongata) provides novel insights into sex-related genes	3
Analysis of NGS data from Peruvian Loxosceles laeta spider venom gland reveals toxin diversity	3
Structural evolution of an amphibian-specific globin: A computational evolutionary biochemistry approach	3
iTRAQ-based quantitative proteomic analysis of the hepatopancreas in Scylla paramamosain during the molting cycle	3
Transcriptional responses of Crassostrea hongkongensis under high and low salinity stress	3
Transcriptomic analysis of sexually dimorphic cypris larvae of the rhizocephalan barnacle Peltogasterella gracilis	3
Transcriptome and metabolome analyses reveal gender-specific expression genes in sea cucumber (Holothuria leucospilota)	3
Proteomic analysis revealed gender-related differences in the skin mucus proteome of discus fish (Symphysodon haraldi) during the parental and non-parental care periods	3
Impact of triclocarban exposure on development and gene expression in the wolf spider, Pardosa pseudoannulata (Araneae: Lycosidae)	3
Diapause differentially modulates the transcriptomes of fat body and flight muscle in the Colorado potato beetle	3
Differential gene expression analysis in the scallop Argopecten purpuratus exposed to altered pH and temperature conditions in an upwelling-influenced farming area	3
Divergent metabolic responses to sex and reproduction in the sea cucumber Apostichopus japonicus	3
Developing the ‘omic toolkit of comparative physiologists	3
Screening for IBs-relative genes by transcriptome analysis and generation IBs-less mutants in Culter alburnus	3
Functional stomach loss preceding body inflation evolution in Tetraodontiformes: Evidence of gene loss and rapid evolution	3

Transcriptome analysis of growth and shell color between two genetic variants of Corbicula fluminea with different shell colors	3
Comprehensive analysis of lncRNA and mRNA expression in triploid rainbow trout (Oncorhynchus mykiss) liver in response to chronic hypoxia	3
Comparative transcriptomic analysis reveals the gonadal development-related gene response to environmental temperature in Mauremys mutica	3
Integrated gut microbiota and multi-omics analysis revealed the growth differences of female giant freshwater prawn (Macrobrachium rosenbergii)	3
Transcriptome profiling of triploid Crassostrea gigas gills indicates the host immune mechanism against bacterial infection	3
The hypoxia response pathway in the Antarctic fish Notothenia coriiceps is functional despite a poly Q/E insertion mutation in HIF-1α	3
Sex differences in antioxidant ability and energy metabolism level resulting in the difference of hypoxia tolerance in red swamp crayfish (Procambarus clarkii)	3
Identification, characterization, and expression analysis reveal regulatory roles of MCM genes in Patinopecten yessoensis under low-pH stress	3
Human type 2 diabetes mellitus-associated transcriptional disturbances in a high-sugar diet long-term exposed Drosophila melanogaster	3
Analyses of regulatory network and discovery of potential biomarkers for Korean rockfish (Sebastes schlegelii) in responses to starvation stress through transcriptome and metabolome	3
Whole transcriptome RNA sequencing provides novel insights into the molecular dynamics of ovarian development in mud crab, Scylla paramamosain after mating	3
Genome-wide identification, evolution, and expression analysis of the bone morphogenetic protein gene family in Myxocyprinus asiaticus	3
Methylosome protein 50 is necessary for oogenesis in medaka	3
Genetic dissection of crayfish (Procambarus clarkii) high temperature tolerance and assessment of the potential application in breeding of the HSP genes	3
Metabolism responses in the intestine of Oreochromis mossambicus exposed to salinity, alkalinity and salt-alkalinity stress using LC-MS/MS-based metabolomics	3
Integration of metagenome and metabolome analysis reveals the correlation of gut microbiota, oxidative stress, and inflammation in Coilia nasus under air exposure stress and salinity mitigation	3
Liquid chromatography-mass spectrometry based metabolomics investigation of different tissues of Mytilus galloprovincialis	3
Biomineralization in a cold environment: Insights from shield compositions and transcriptomics of polar sternaspids (Sternaspidae, Polychaeta)	3
Transcriptome analysis reveals key genes and pathways related to sex differentiation in the Chinese soft-shelled turtle (Pelodiscus sinensis)	3
Combined transcriptome and metabolome analysis reveals the mechanism of high nitrite tolerance in freshwater mussel Anodonta woodiana	3
Transcriptome analysis provides new insight into the mechanism of Bombyx mori under zinc exposure	3
Cadmium exposure elicited dynamic RNA m6A modification and epi-transcriptomic regulation in the Pacific whiteleg shrimp Litopenaeus vannamei	3
Comparative transcriptome analysis reveals molecular mechanisms of the effects of light intensity and photoperiod on ovarian development in Procambarus clarkii (Girard, 1852)	3
Differentially expressed lncRNAs involved in immune responses of Haliotis diversicolor and H. discus hannai challenged with Vibrio parahaemolyticus	3
Integrative analysis of metagenome and metabolome provides new insights into intestinal health protection in Coilia nasus larvae via probiotic intervention	3
Renal metabolomic profiling of large yellow croaker Larimichthys crocea acclimated in low salinity waters	3
The genome of the euryhaline rotifer Brachionus paranguensis: Potential use in molecular ecotoxicology	3
Sex-specific omic responses in animal physiology and toxicology	3