Comparative Biochemistry and Physiology D-Genomics & Proteomics

Article	Citations
On characterizing the Red-headed Krait (Bungarus flaviceps) venom: Decomplexation proteomics, immunoreactivity and toxicity cross-neutralization by hetero-specific antivenoms	27
Comparative proteomic analysis of spleen reveals key immune-related proteins in the yak (Bos grunniens) at different growth stages	22
Comprehensive analysis of hub mRNA, lncRNA and miRNA, and associated ceRNA networks implicated in cobia (Rachycentron canadum) scales under hypoosmotic adaption	20
Comparative proteomics elucidates the dynamics of ovarian development in the Chinese mitten crab Eriocheir sinensis	19
Multi-omics reveals the molecular mechanism of muscle quality changes in common carp (Cyprinus carpio) under two aquaculture systems	18
Roles and occurrences of microbiota in the osmoregulatory organs, gills and gut, in marine medaka upon hypotonic stress	17
Gastrointestinal dysbiosis induced by Nocardia sp. infection in tilapia	15
Metabolomics and microbiome co-analysis reveals altered innate immune responses in Charybdis japonica following Aeromonas hydrophila infection	14
Effect of creatine and EDTA supplemented diets on European seabass (Dicentrarchus labrax) allergenicity, fish muscle quality and omics fingerprint	14
Comparative transcriptome analysis of different developmental stage of Bactrocera minax (Diptera: Tephritidae): Implication of the molecular basis of its obligatory diapause induction	13
Editorial Board	13
Diploid and triploid Chinook salmon (Oncorhynchus tshawytscha) have altered microRNA responses in immune tissues after infection with Vibrio anguillarum	13
Deficiency of interleukin-17 receptor A1 induces microbiota disruption in the intestine of Japanese medaka, Oryzias latipes	12
Transcriptomic and proteomic analysis of the underlying mechanisms of digestion of triacylglycerols and phosphatides and absorption and fate of fatty acids along the midgut of Musca domestica	11
Behavioral and hypothalamic transcriptome analyses reveal sex-specific responses to phenanthrene exposure in the fathead minnow (Pimephales promelas)	11
Evolution of the sex-determination gene Doublesex within the termite lineage	11
Sex bias miRNAs in Cynoglossus semilaevis could play a role in transgenerational inheritance	11
Transcriptome analysis and screening of putative sex-determining genes in the invasive pest, Frankliniella occidentalis (Thysanoptera: Thripidae)	11
Comparative transcriptome analysis reveals physiological responses in liver tissues of Epinephelus coioides under acute hypoxia stress	11
Hepatic transcriptome analysis reveals the metabolic strategies of largemouth bass (Micropterus salmoides) under different dissolved oxygen condition	11
Identification and analysis of olfactory genes in Dioryctria abietella based on the antennal transcriptome	11
Identification of important proteins from the gonads and pituitary involved in the gonad development of Amur sturgeon, Acipenser schrenckii, regulated by GnRH-a treatment by iTRAQ-based analysis	10
Multi-omics analysis reveals the cerebral sex-specific responses to chronic hypoxia in yellow catfish (Pelteobagrus fulvidraco)	10
Sex-bias of core intestinal microbiota in different stocks of Chinese mitten crabs (Eriocheir sinensis)	10
Genome-wide analyses of Glutathione S-transferase gene family and expression profiling under deltamethrin exposure in non-biting midge Propsilocerus akamusi	10

Transcriptome analysis reveals the potential mechanism of plateau environment on muscle growth and development in yak	10
Genomic and expression characterization of aquaporin genes from Siniperca chuatsi	10
Peptidomic analysis of the host-defense peptides in skin secretions of the Amazon River frog Lithobates palmipes (Ranidae)	9
Transcriptomic analyses reveals a diverse venom composition in Agelena limbata (Araneae: Agelenaidae)	9
Dietary steroids promote body weight growth and induce gametogenesis by increasing the expressions of genes related to cell proliferation of sea cucumber (Apostichopus japonicus)	9
Transcriptional and metabolomic investigation of the stress response in snow crab during simulated transport condition (Chionoecetes opilio)	9
Transcriptome analysis reveals the immune response mechanism of golden cuttlefish (Sepia esculenta) larvae exposed to ink	9
Transcriptomic impacts and potential routes of detoxification in a lampricide-tolerant teleost exposed to TFM and niclosamide	9
Transcriptome analysis and expression profiles of odorant binding proteins and chemosensory proteins in Orius sauteri	9
Genome-wide analysis reveals the evolutionary history of TAG intracellular lipases and their roles in different molting stages of Decapods	8
Genome-wide identification of 194 G protein-coupled receptor (GPCR) genes from the water flea Daphnia magna	8
Identification and functional analysis of miRNAs in skeletal muscle of juvenile and adult largemouth bass, Micropterus salmoides	8
Comparative analysis of intestinal structure, enzyme activity, intestinal microbiota and gene expression in different segments of pufferfish (Takifugu Obscurus)	8
Functional verification of a landmark gene EVM713 involved in spermatogenesis in the marine bivalve Chlamys nobilis	8
Alterations in captive Alexandrine parakeet (Palaeornis eupatria) gut microbiome and metabolome in response to dietary change	8
Editorial Board	8
Changes in transcriptome regulations of a marine rotifer Brachionus plicatilis under methylmercury stress	7
Comparative lipidomics profiling of the sea urchin, Strongylocentrotus intermedius	7
Genome-wide analyses of glutathione S-transferase gene family and expression profiling among three haplotypes Aphis gossypii	7
Identification and characterization of circadian clock genes in the head transcriptome of Conopomorpha sinensis Bradley	7
Identification of candidate leg chemosensory genes associated with nursing behavior in the Apis mellifera	7
16S rRNA gene sequencing analysis reveals an imbalance in the intestinal flora of Eriocheir sinensis with hepatopancreatic necrosis disease	7
De novo assembly, characterization and comparative transcriptome analysis of gonads reveals sex-biased genes in Coreoperca whiteheadi	7
Gene family expansion analysis and identification of the histone family in Spodoptera frugiperda	7
Corrigendum to “Transcriptome analysis reveals the involvement of ubiquitin-proteasome pathway in the regulation of muscle growth of rice flower carp” [Comp. Biochem. Physiol. Part D Genomics Proteomi	7
Identification and expression profiling of chemosensory membrane protein genes in Achelura yunnanensis (Lepidoptera: Zygaenidae)	7
Comparative transcriptome analysis reveals the different responding mechanisms of ovary and hepatopancreas following polyI:C challenge in Macrobrachium nipponense	7
Expression profiling and functional characterization of the duplicated Oxr1b gene in zebrafish	7
Effects of low temperature air exposure and immersion on antioxidant, immune, intestinal flora and metabolome of Chinese mitten crab (Eriocheir sinensis)	6
Transcriptome profiles revealed high- and low-salinity water altered gill homeostasis in half-smooth tongue sole (Cynoglossus semilaevis)	6
Comparative transcriptome analysis reveals key genes and pathways related to gonad development in the sea cucumber Apostichopus japonicus	6
Transcriptome variation in banded newt (Ommatotriton vittatus) during its life cycle and habitat transition	6
Integrated analysis of transcriptome and proteome for exploring mechanism of promoting proliferation of equine satellite cells associated with leucine	6
The linkage of cell cycle and DNA replication with growth difference in female Chinese tongue sole (Cynoglossus semilaevis): Analysis from transcriptomic study and WGCNA	6
TMT-based proteomics analysis of sea urchin (Strongylocentrotus intermedius) under high temperature stress	6
Sex dependent transcriptome responses of the diamondback moth, Plutella xylostella L. to cold stress	6
Identification of the changes of immune response, morphology, and gene expressions in hepatopancreas of Macrobrachium nipponense under the treatment of alkalinity exposure	6
Comparative proteomics elucidates the potential mechanism of heritable carapace color of three strains Chinese mitten crab Eriocheir sinensis	6
Investigating the lipid profile of Anopheles stephensi mosquitoes across developmental life stages	6
Large lipid transfer proteins in hepatopancreas of the mud crab Scylla paramamosain	6
Identification of key lncRNAs and mRNAs in muscle development pathways of Tan sheep	6
The energy metabolism and transcriptomic responses of the Manila clam (Ruditapes philippinarum) under the low-temperature stress	6
Omics-driven insight into physiological responses of species in aquaculture	6
Weighted correlation network analysis of the genes in the eyes of juvenile Plectropomus leopardus provide novel insights into the molecular mechanisms of the adaptation to the background color	6
Effects of environmentally relevant concentrations of glyphosate and aminomethylphosphonic acid on biotransformation and stress response proteins in the liver of zebrafish (Danio rerio)	6
Dynamic expression and functional analysis of circular RNA in the gonads of Chinese soft-shelled turtles (Pelodiscus sinensis)	6
Editorial Board	6
RNA-Seq analysis of the blue light-emitting Orfelia fultoni (Diptera: Keroplatidae) suggest photoecological adaptations at the molecular level	6
The dynamic transcriptomic response of the goldfish brain under chronic hypoxia	6
The complete mitochondrial genome of Trifida elongate and comparative analysis of 43 leafhoppers	6

Identification of chemosensory genes by antennal transcriptome analysis and expression profiles of odorant-binding proteins in parasitoid wasp Aulacocentrum confusum	5
The effects of bisphenol A on liver proteome and mucus vitellogenin in comparison to plasma as a non-invasive biomarker in immature Siberian sturgeons (Acipenser baerii)	5
Comparative skin histological and transcriptomic analysis of Rana kukunoris with two different skin colors	5
Exosomes serve as a crucial mediator of epithelial–fibroblast communication during hair follicle morphogenesis in cashmere goats	5
Integrated transcriptomic and proteomic analysis of the physiological changes of the liver in domesticated Eurasian perch, Perca fluviatilis	5
Genome-wide identification and expression profiles of sex-related gene families in the Pacific abalone Haliotis discus hannai	5
Comparative transcriptomics reveals the conservation and divergence of reproductive genes across three sympatric Tomicus bark beetles	5
Decreased acetylation of HDGF improves oviduct production in Rana dybowskii, Rana amurensis, and Rana huanrenensis	5
Integrated transcriptomic and lipidomic analysis reveals that arachidonic acid mediates the allograft-induced stress response in Pinctada fucata martensii	5
Neighbours matter: Effects of genomic organization on gene expression plasticity in response to environmental stresses during biological invasions	5
Apoptosis, MAPK signaling pathway affected in tilapia liver following nano-microplastics and sulfamethoxazole acute co-exposure	5
A comprehensive overview of ovarian small non-coding RNAs in the late overwintering and breeding periods of Onychostoma macrolepis	5
Proteomic analysis of hepatic fibrosis induced by a high starch diet in largemouth bass (Micropterus salmoides)	5
The mantle exosome proteins of Hyriopsis cumingii participate in shell and nacre color formation	5
Preliminary analysis of pathways and their implications during salinity stress in abalone	5
Changes in the gut bacterial community affect miRNA profiles in Riptortus pedestris under different rearing conditions	5
Comparative transcriptome and methylome analysis of the hindbrain in olive flounder (Paralichthys olivaceus) considering individual behavior-type and oxygen metabolism	5
Weighted gene co-expression network analysis of embryos and first instar larvae of the horseshoe crab Tachypleus tridentatus uncovers development gene networks	5
RNA-seq analysis of gene expression changes in cuticles during the larval-pupal metamorphosis of Plutella xylostella	5
RNA-seq analysis of the differential response to low-temperature stress in two morphs of mud crabs (Scylla paramamosain)	5
Editorial Board	5
The tricarboxylic acid cycle is inhibited under acute stress from carbonate alkalinity in the gills of Eriocheir sinensis	5
Effects of myo-inositol on growth and biomarkers of environmental stress and metabolic regulation in Pacific white shrimp (Litopenaeus vannamei) reared at low salinity	5
Incorporation of microgastropoda species provides novel insights into phylogeny of Trochoidea (Gastropoda: Vetigastropoda)	5
High levels of sinigrin trigger synthesis of fatty acids in Plutella xylostella (L.)	5
Identification of sex-specific splicing via comparative transcriptome analysis of gonads from sea cucumber Apostichopus japonicus	4
Transcriptome analysis reveals molecular mechanism of Dosinia corrugata in response to acute heat stress	4
Transcriptomic and metabolomic analyses provide insights into the energy metabolism and signaling regulation of byssus secretion in winged pearl oyster Pteria penguin	4
Atlantic sturgeon and shortnose sturgeon exhibit highly divergent transcriptomic responses to acute heat stress	4
Comparative mitogenomic analyses of the infraclass Pteriomorphia (Mollusca: Bivalvia) provides novel insights into gene rearrangement and phylogeny	4
Transcriptome analysis reveals the involvement of ubiquitin-proteasome pathway in the regulation of muscle growth of rice flower carp	4
Cys-loop ligand-gated ion channel superfamily of Pardosa pseudoannulata: Implication for natural enemy safety	4
Effects of temperature on metamorphosis and endochondral ossification in Rana chensinensis tadpoles	4
Distinct skin morphological and transcriptomic profiles between wild and albino Oscar Astronotus ocellatus	4
Transcriptome sequencing reveals improved ammonia nitrogen tolerance in Zebra II strain of the Manila clam Ruditapes philippinarum	4
Expression analysis of alpha keratins and corneous beta-protein genes during embryonic development of Gekko japonicus	4
Identification of hub genes in digestive system of mandarin fish (Siniperca chuatsi) fed with artificial diet by weighted gene co-expression network analysis	4
Identification of key overlapping DEGs and molecular pathways under multiple stressors in the liver of Nile tilapia (Oreochromis niloticus)	4
Post-prandial response in hepatopancreas and haemolymph of Penaeus monodon fed different diets. Omics insights into glycoconjugate metabolism, energy utilisation, chitin biosynthesis, immune function,	4
Genome-wide analysis of the cytochrome P450 gene family in Pacific oyster Crassostrea gigas and their expression profiles during gonad development	4
Using proteomics, q-PCR and biochemical methods complementing as a multiapproach to elicit the crucial responses of zebrafish liver exposed to neonicotinoid pesticide	4
Insights into sequence characteristics and evolutionary history of DGATs in arthropods	4
Coordinated transcriptomics and peptidomics of central nervous system identify neuropeptides and their G protein-coupled receptors in the oriental fruit moth Grapholita molesta	4
Snake venom proteomics and antivenomics of two Sundaic lance-headed pit vipers: Trimeresurus wiroti (Malaysia) and Trimeresurus puniceus (Indonesia)	4
Comparative transcriptome analysis reveals a potential mechanism for host nutritional manipulation after parasitization by Leptopilina boulardi	4
Exploring symbiont gene expression in two echinoid-associated shrimp species under host separation	4
Transcriptomic insights into vibrio-induced mortality in the clam Meretrix petechialis under high temperature	4
Transcriptome analyses reveal differentially expressed genes associated with development of the palatal organ in bighead carp (Hypophthalmichthys nobilis)	4
Molecular insights into oocyte development and sperm storage in black rockfish (Sebastes schlegelii): Proteomic changes across reproductive stages	4
Effects of replacing fishmeal with different proportions of mixed protein source in the diet of largemouth bass (Micropterus salmoides)	4
Transcriptomics reveals different response mechanisms of Litopenaeus vannamei hemocytes to injection of Vibrio parahaemolyticus and WSSV	4
De novo gonad transcriptome analysis of elongate loach (Leptobotia elongata) provides novel insights into sex-related genes	3
Comparative transcriptome analysis of lethality in response to RNA interference of the oriental river prawn (Macrobrachium nipponense)	3
Analysis of NGS data from Peruvian Loxosceles laeta spider venom gland reveals toxin diversity	3
Transcriptome analysis provides new insight into the mechanism of Bombyx mori under zinc exposure	3
Transcriptome analysis of growth and shell color between two genetic variants of Corbicula fluminea with different shell colors	3
Comparative transcriptome analysis reveals molecular mechanisms of the effects of light intensity and photoperiod on ovarian development in Procambarus clarkii (Girard, 1852)	3
Transcriptome analysis reveals key genes and pathways related to sex differentiation in the Chinese soft-shelled turtle (Pelodiscus sinensis)	3
Screening for IBs-relative genes by transcriptome analysis and generation IBs-less mutants in Culter alburnus	3
iTRAQ-based quantitative proteomic analysis of the hepatopancreas in Scylla paramamosain during the molting cycle	3
Metabolism responses in the intestine of Oreochromis mossambicus exposed to salinity, alkalinity and salt-alkalinity stress using LC-MS/MS-based metabolomics	3
Comprehensive analysis of lncRNA and mRNA expression in triploid rainbow trout (Oncorhynchus mykiss) liver in response to chronic hypoxia	3
The genome of the euryhaline rotifer Brachionus paranguensis: Potential use in molecular ecotoxicology	3
Systematic identification and expression analysis of the Sox gene family in spotted sea bass (Lateolabrax maculatus)	3
Transcriptome profiling revealed the growth superiority of hybrid pufferfish derived from Takifugu obscurus ♀ × Takifugu rubripes ♂	3
Adaptive mitochondrial genome functioning in ecologically different farm-impacted natural seedbeds of the endemic blue mussel Mytilus chilensis	3
Utilization of temperature-mediated activation of thyroid hormone-induced molecular memory to evaluate early signaling events in the olfactory epithelium of Rana [Lithobates] catesbeiana tadpoles	3
Pyraclostrobin-induced toxic effects in the gills of common carp (Cyprinus carpio L.): Mechanisms unveiled through biochemical, molecular, and metabolomic analyses	3
Regulation mechanism of endochondral ossification in Rana zhenhaiensis during metamorphosis based on histomorphology and transcriptome analyses	3
Differential gene expression analysis in the scallop Argopecten purpuratus exposed to altered pH and temperature conditions in an upwelling-influenced farming area	3
Impact of triclocarban exposure on development and gene expression in the wolf spider, Pardosa pseudoannulata (Araneae: Lycosidae)	3
Comparative transcriptomic analysis reveals the gonadal development-related gene response to environmental temperature in Mauremys mutica	3
Proteomic analysis reveals immune-related proteins of coelomic fluid in Urechis unicinctus	3
Cadmium exposure elicited dynamic RNA m6A modification and epi-transcriptomic regulation in the Pacific whiteleg shrimp Litopenaeus vannamei	3
Transcriptomic evidence indicates that montane leaf beetles prioritize digestion and reproduction in a sex-specific manner during emergence from dormancy	3
Proteomics analysis of differentially abundant proteins in the rohu kidney infected with Edwardsiella tarda	3
Changes of mRNA, miRNA and lncRNA expression contributing to skeletal muscle differences between fetus and adult Mongolian horses	3
Functional insights of digestion, absorption, and immunity in different segments of the intestine in Hemibarbus labeo from transcriptomic analysis	3
Effects of enrofloxacin's exposure on the gut microbiota of Tilapia fish (Oreochromis niloticus)	3
Current topics in omics, ecotoxicology, and environmental science	3

Divergent metabolic responses to sex and reproduction in the sea cucumber Apostichopus japonicus	3
Liver transcriptome analysis reveals genes and pathways involved in the ovarian development in spotted scat (Scatophagus argus)	3
Whole transcriptome analysis identifies differentially expressed mRNA, miRNA and lncRNA associated with male sterility in the silkworm, Bombyx mori	3
Dietary jellyfish affect digestive enzyme activities and gut microbiota of Pampus argenteus	3
Whole transcriptome RNA sequencing provides novel insights into the molecular dynamics of ovarian development in mud crab, Scylla paramamosain after mating	3
Metabolite profiling of the post-ovulatory oocytes of the common carp, Cyprinus carpio: A 1H NMR-based metabolomics approach	3
Structural evolution of an amphibian-specific globin: A computational evolutionary biochemistry approach	3
Integrated gut microbiota and multi-omics analysis revealed the growth differences of female giant freshwater prawn (Macrobrachium rosenbergii)	3
Integrative analysis of metagenome and metabolome provides new insights into intestinal health protection in Coilia nasus larvae via probiotic intervention	3
Differentially expressed lncRNAs involved in immune responses of Haliotis diversicolor and H. discus hannai challenged with Vibrio parahaemolyticus	3
Ocean warming and acidification alter calcification and innate immune system gene expression in juvenile American lobsters, Homarus americanus	3
Liquid chromatography-mass spectrometry based metabolomics investigation of different tissues of Mytilus galloprovincialis	3
The hypoxia response pathway in the Antarctic fish Notothenia coriiceps is functional despite a poly Q/E insertion mutation in HIF-1α	3
Combined transcriptome and metabolome analysis reveals the mechanism of high nitrite tolerance in freshwater mussel Anodonta woodiana	3
Signaling pathways underlying extracellular trap formation induced by Vibrio alginolyticus in Strongylocentrotus intermedius	3
Sex differences in antioxidant ability and energy metabolism level resulting in the difference of hypoxia tolerance in red swamp crayfish (Procambarus clarkii)	3
Renal metabolomic profiling of large yellow croaker Larimichthys crocea acclimated in low salinity waters	3
Methylosome protein 50 is necessary for oogenesis in medaka	3
Molecular responses of paddy field carp (Cyprinus carpio) in the agricultural heritage to major environmental factors in paddy fields	3
Biomineralization in a cold environment: Insights from shield compositions and transcriptomics of polar sternaspids (Sternaspidae, Polychaeta)	3
Transcriptome profiling of triploid Crassostrea gigas gills indicates the host immune mechanism against bacterial infection	3
Host plants transfer induced regulation of the chemosensory genes repertoire in the alfalfa plant bug Adelphocoris lineolatus (Goeze)	3
Synergistic integration of transcriptomics and metabolomics analyses provides novel insights into the mechanisms underlying unsynchronized growth of greater amberjack (Seriola dumerili)	3
Transcriptome analysis of the moso bamboo pest, Hippotiscus dorsalis, reveals differentially expressed unigenes across various tissues	3