OOIR: Observatory of International Research

Papers

(The TQCC of Comparative Biochemistry and Physiology D-Genomics & Proteomics is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-05-01 to 2024-05-01.)

Article	Citations
Ecotoxicoproteomic assessment of microplastics and plastic additives in aquatic organisms: A review	32
Transcriptome analysis of grass carp (Ctenopharyngodon idella) between fast- and slow-growing fish	28
Impact of polyethylene on salivary glands proteome in Galleria melonella	24
Analysis of testis metabolome and transcriptome from the oriental river prawn (Macrobrachium nipponense) in response to different temperatures and illumination times	20
Identification and phylogenetics of Spodoptera frugiperda chemosensory proteins based on antennal transcriptome data	17
Transcriptome analysis reveals that high temperatures alter modes of lipid metabolism in juvenile turbot (Scophthalmus maximus) liver	17
Imprinting statistically sound conclusions for gut microbiota in comparative animal studies: A case study with diet and teleost fishes	16
The first two complete mitogenomes of the order Apodida from deep-sea chemoautotrophic environments: New insights into the gene rearrangement, origin and evolution of the deep-sea sea cucumbers	16
Identification and sex-biased profiles of candidate olfactory genes in the antennal transcriptome of the parasitoid wasp Cotesia vestalis	16
Integrated analysis of transcriptomic and metabolomic data to evaluate responses to hypersalinity stress in the gill of the razor clam (Sinonovacula constricta)	16
Deiminated proteins and extracellular vesicles - Novel serum biomarkers in whales and orca	16
Ecotoxico-lipidomics: An emerging concept to understand chemical-metabolic relationships in comparative fish models	16
Acute air exposure modulates the microRNA abundance in stress responsive tissues and circulating extracellular vesicles in rainbow trout (Oncorhynchus mykiss)	14
Identification of chemosensory genes by antennal transcriptome analysis and expression profiles of odorant-binding proteins in parasitoid wasp Aulacocentrum confusum	13
Transcriptome signatures in the brain of a migratory songbird	13
Transcriptome analysis identifies candidate genes associated with skin color variation in Triplophysa siluroides	12
Comparative transcriptome analysis provides novel insights into the molecular mechanism of the silver carp (Hypophthalmichthys molitrix) brain in response to hypoxia stress	12
Transcriptome analysis of liver provides insight into metabolic and translation changes under hypoxia and reoxygenation stress in silver sillago (Sillago sihama)	12
Combining of transcriptomic and proteomic data to mine immune-related genes and proteins in the liver of Cynoglossus semilaevis challenged with Vibrio anguillarum	11
Identification and characterization of long noncoding RNAs provide insight into the regulation of gene expression in response to heat stress in rainbow trout (Oncorhynchus mykiss)	11
DNA methylation variation in the brain of laying hens in relation to differential behavioral patterns	11
Transcriptome profiling reveal Acanthopanax senticosus improves growth performance, immunity and antioxidant capacity by regulating lipid metabolism in GIFT (Oreochromis niloticus)	11
Transcriptome analysis reveals key genes and pathways associated with egg production in Nandan-Yao domestic chicken	11
Comparative transcriptome analysis reveals changes in gene expression in sea cucumber (Holothuria leucospilota) in response to acute temperature stress	11
Characterizing physical protein targets of chemical contaminants with chemical proteomics: Is it time to fill a crucial environmental toxicology knowledge gap?	10

Transcriptomic responses to heat stress in gill and liver of endangered Brachymystax lenok tsinlingensis	10
Transcriptome analysis of Liriomyza trifolii (Diptera: Agromyzidae) in response to temperature stress	10
Metabolomic analysis of white, green and purple morphs of sea cucumber Apostichopus japonicus during body color pigmentation process	10
Physiological parameters and gut microbiome associated with different dietary lipid levels in hybrid yellow catfish (Tachysurus fulvidraco♀× Pseudobagrus vachellii♂)	10
Effects of moderate exercise on hepatic amino acid and fatty acid composition, liver transcriptome, and intestinal microbiota in channel catfish (Ictalurus punctatus)	10
Identification and analysis of olfactory genes in Dioryctria abietella based on the antennal transcriptome	10
An improved genome assembly and annotation of the Antarctic copepod Tigriopus kingsejongensis and comparison of fatty acid metabolism between T. kingsejongensis and the temperate copepod T. japonicus	9
Physiological responses and molecular strategies in heart of silver carp (Hypophthalmichthys molitrix) under hypoxia and reoxygenation	9
Short- and medium-term exposures of diazepam induce metabolomic alterations associated with the serotonergic, dopaminergic, adrenergic and aspartic acid neurotransmitter systems in zebrafish (Danio re	9
Early life stress causes persistent impacts on the microbiome of Atlantic salmon	9
Transcriptome reveals the important role of metabolic imbalances, immune disorders and apoptosis in the treatment of Procambarus clarkii at super high temperature	9
Are we forgetting the “proteomics” in multi-omics ecotoxicology?	9
Transcriptome sequencing provides insights into the mechanism of hypoxia adaption in bighead carp (Hypophthalmichthys nobilis)	8
Transcriptomic analyses provide insights into the adaptive responses to heat stress in the ark shells, Scapharca subcrenata	8
16S rRNA sequencing analysis of the correlation between the intestinal microbiota and body-mass of grass carp (Ctenopharyngodon idella)	8
Investigation of growth retardation in Macrobrachium rosenbergii based on genetic/epigenetic variation and molt performance	8
Genome-wide identification and transcriptome-based expression profiling of Wnt gene family in Ruditapes philippinarum	8
Identification and expression profiling of chemosensory membrane protein genes in Achelura yunnanensis (Lepidoptera: Zygaenidae)	8
The genome of the freshwater monogonont rotifer Brachionus angularis: Identification of phase I, II, and III detoxification genes and their roles in molecular ecotoxicology	8
Study of the venom proteome of Vipera ammodytes ammodytes (Linnaeus, 1758): A qualitative overview, biochemical and biological profiling	7
Transcriptional changes revealed water acidification leads to the immune response and ovary maturation delay in the Chinese mitten crab Eriocheir sinensis	7
Environmental salinity influences the branchial expression of TCR pathway related genes based on transcriptome of a catadromous fish	7
Transcriptome analysis provides insights into long noncoding RNAs in medaka gonads	7
Meta-analysis of differentially-regulated hepatic microRNAs identifies candidate post-transcriptional regulation networks of intermediary metabolism in rainbow trout	7
Transcriptomic analysis revealed gene expression profiles during the sex differentiation of Chinese tongue sole (Cynoglossus semilaevis)	7
Plastics in our water: Fish microbiomes at risk?	7
Snake venom proteomics and antivenomics of two Sundaic lance-headed pit vipers: Trimeresurus wiroti (Malaysia) and Trimeresurus puniceus (Indonesia)	7
The genome of the marine monogonont rotifer Brachionus rotundiformis and insight into species-specific detoxification components in Brachionus spp.	7
Transcriptome and functional responses to absence of astaxanthin in Atlantic salmon fed low marine diets	7
Residual molecular and behavioral effects of the phenylpyrazole pesticide fipronil in larval zebrafish (Danio rerio) following a pulse embryonic exposure	7
Time-dependent biomolecular responses and bioaccumulation of perfluorooctane sulfonate (PFOS) in Daphnia magna	7
Comparative transcriptomic assessment of the chemosensory receptor repertoire of Drosophila suzukii adult and larval olfactory organs	7
Comparative transcriptome analysis reveals metabolism transformation in Coilia nasus larvae during the mouth-open period	7
A new insight into the intestine of Pacific white shrimp: Regulation of intestinal homeostasis and regeneration in Litopenaeus vannamei during temperature fluctuation	7
Transcriptome analysis of phototransduction-related genes in tentacles of the sea cucumber Apostichopus japonicus	6
Transcriptome analysis of hepatopancreas from different living states oriental river prawn (Macrobrachium nipponense) in response to hypoxia	6
Comparative phylotranscriptomics reveals putative sex differentiating genes across eight diverse bivalve species	6
Hypoxic responses in Oncorhynchus mykiss involve angiogenesis, lipid, and lactate metabolism, which may be triggered by the cortisol stress response and epigenetic methylation	6
Expected ocean warming conditions significantly alter the transcriptome of developing postlarval American lobsters (Homarus americanus): Implications for energetic trade-offs	6
Physiological, morphological and transcriptomic responses of Tibetan naked carps (Gymnocypris przewalskii) to salinity variations	6
Transcriptome analysis revealed multiple immune processes and energy metabolism pathways involved in the defense response of the large yellow croaker Larimichthys crocea against Pseudomonas plecogloss	6
Transcriptomic changes in the pea aphid, Acyrthosiphon pisum: Effects of the seasonal timer and photoperiod	6
The genome of the minute marine rotifer Proales similis: Genome-wide identification of 401 G protein-coupled receptor (GPCR) genes	6
Zebrafish miR-462-731 is required for digestive organ development	6
Adaptive mitochondrial genome functioning in ecologically different farm-impacted natural seedbeds of the endemic blue mussel Mytilus chilensis	6
Effects of dietary icariin supplementation on the ovary development-related transcriptome of Chinese mitten crab (Eriocheir sinensis)	6
Chromosome-level genome assembly of the European flat oyster (Ostrea edulis) provides insights into its evolution and adaptation	6
Identification and expression of chemosensory receptor genes in the egg parasitoid Trissolcus basalis	6
Divergent metabolic responses to sex and reproduction in the sea cucumber Apostichopus japonicus	6
Characterization of the intestinal digesta and mucosal microbiome of the grass carp (Ctenopharyngodon idella)	6

CircRNA profiling reveals circ880 functions as miR-375-3p sponge in medaka gonads	6
Transcriptome profiling revealed the growth superiority of hybrid pufferfish derived from Takifugu obscurus ♀ × Takifugu rubripes ♂	5
Transcriptome analysis reveals roles of polian vesicle in sea cucumber Apostichopus japonicus response to Vibrio splendidus infection	5
The genome of the marine water flea Diaphanosoma celebensis: Identification of phase I, II, and III detoxification genes and potential applications in marine molecular ecotoxicology	5
Integrative mRNA-miRNA interaction analysis reveals the molecular mechanism of skin color variation between wild-type and yellow mutant rainbow trout (Oncorhynchus mykiss)	5
The transcriptomic response of adult salmon lice (Lepeophtheirus salmonis) to reduced salinity	5
Comparative microRNAs expression profiles analysis during embryonic development of common carp, Cyprinus carpio	5
Comparative metabolomics analysis of ovarian developmental stages in Macrobrachium nipponense	5
Comparative proteomics elucidates the dynamics of ovarian development in the Chinese mitten crab Eriocheir sinensis	5
Transcriptome analysis of acute high temperature-responsive genes and pathways in Palaemon gravieri	5
Evolution of nacre- and prisms-related shell matrix proteins in the pen shell, Atrina pectinata	5
Effect of creatine and EDTA supplemented diets on European seabass (Dicentrarchus labrax) allergenicity, fish muscle quality and omics fingerprint	5
Comparative transcriptome analysis on four types of gonadal tissues of blotched snakehead (Channa maculata)	5
Comparative epigenetics in animal physiology: An emerging frontier	5
Exposure to heat stress causes downregulation of immune response genes and weakens the disease resistance of Micropterus salmoides	5
Metabonomics of white adipose tissue and brown adipose tissue in Tupaia belangeri during cold acclimation	5
The gut content microbiome of wild-caught rainbow darter is altered during laboratory acclimation	5
Gill physiological and transcriptomic response of the threatened freshwater mussel Solenaia oleivora to salinity shift	5
Analysis of the Glyphodes pyloalis larvae immune transcriptome in response to parasitization by its endoparasitoid, Aulacococentrum confusum	5
Growth trait gene analysis of kuruma shrimp (Marsupenaeus japonicus) by transcriptome study	5
RNA-seq analysis of the differential response to low-temperature stress in two morphs of mud crabs (Scylla paramamosain)	5
Transcriptome analysis of gender-biased CYP genes in gonads of the sea cucumber Apostichopus japonicus	5
Sex bias miRNAs in Cynoglossus semilaevis could play a role in transgenerational inheritance	5
Genome-wide identification and structural analysis of heat shock protein gene families in the marine rotifer Brachionus spp.: Potential application in molecular ecotoxicology	5
A combination of genome-wide association study screening and SNaPshot for detecting sex-related SNPs and genes in Cynoglossus semilaevis	5
Sex-dependent host-microbiome dynamics in zebrafish: Implications for toxicology and gastrointestinal physiology	5
Comparative transcriptomic analysis reveals the gonadal development-related gene response to environmental temperature in Mauremys mutica	4
Comparative and functional analysis of desaturase FADS1 (∆5) and FADS2 (∆6) orthologues of marine organisms	4
Transcriptional response to cold and fasting acclimation in Onychostoma macrolepis during the overwintering stage	4
Large lipid transfer proteins in hepatopancreas of the mud crab Scylla paramamosain	4
Comparative lipidomics profiling of the sea urchin, Strongylocentrotus intermedius	4
The effects of corticosterone and background colour on tadpole physiological plasticity	4
Single-molecule long-read (SMRT) transcriptome sequencing of Mercenaria mercenaria reveals a powerful anti-apoptotic system critical for air exposure endurance	4
Label-free quantification proteomics analysis reveals acute hyper-osmotic responsive proteins in the gills of Chinese mitten crab (Eriocheir sinensis)	4
Transcriptome analysis reveals the involvement of ubiquitin-proteasome pathway in the regulation of muscle growth of rice flower carp	4
The impact of salinity and dissolved oxygen regimes on transcriptomic immune responses to oil in early life stage Fundulus grandis	4
Identification and functional analysis of microRNAs in the regulation of summer diapause in Galeruca daurica	4
Fatter or stronger: Resource allocation strategy and the underlying metabolic mechanisms in amphibian tadpoles	4
Comparative transcriptome analysis of lethality in response to RNA interference of the oriental river prawn (Macrobrachium nipponense)	4
Sex-specific lipid profiles in the muscle of Atlantic salmon juveniles	4
Sex dependent transcriptome responses of the diamondback moth, Plutella xylostella L. to cold stress	4
Transcriptome analysis provides the first insight into the molecular basis of temperature plasticity in Banggai cardinalfish, Pterapogon kauderni	4
Application of proteomics in shrimp and shrimp aquaculture	4
Alterations of amino acid metabolism and intestinal microbiota in Chinese mitten crab (Eriocheir sinensis) fed on formulated diet and iced trash fish	4
Environmental enrichment during early rearing provokes epigenetic changes in the brain of a salmonid fish	4
Identification and preliminary characterization of chemosensory-related proteins in the gall fly, Procecidochares utilis by transcriptomic analysis	4
Transcriptome analysis reveals key genes and pathways related to sex differentiation in the Chinese soft-shelled turtle (Pelodiscus sinensis)	4
The mantle exosome proteins of Hyriopsis cumingii participate in shell and nacre color formation	4
Transcriptional responses in newly-hatched Japanese medaka (Oryzias latipes) associated with developmental malformations following diluted bitumen exposure	4
Effects of bacterial haemorrhagic septicemia on the immune response of Leiocassis longirostris by RNA-Seq and microRNA-Seq	4
Transcriptomic analysis reveals a Piscirickettsia salmonis-induced early inflammatory response in rainbow trout skeletal muscle	4
The rise and fall of globins in the amphibia	4
Genome-wide identification and analysis of HECT E3 ubiquitin ligase gene family in Ruditapes philippinarum and their involvement in the response to heat stress and Vibrio anguillarum infection	4
Involvement of glycolysis activation in flatfish sexual size dimorphism: Insights from transcriptomic analyses of Platichthys stellatus and Cynoglossus semilaevis	4
Identification and functional analysis of circRNAs in the skeletal muscle of juvenile and adult largemouth bass (Micropterus salmoides)	4
Human type 2 diabetes mellitus-associated transcriptional disturbances in a high-sugar diet long-term exposed Drosophila melanogaster	4
Comparative mitogenomic analysis of the superfamily Tellinoidea (Mollusca: Bivalvia): Insights into the evolution of the gene rearrangements	4