Plant Methods

Article	Citations
TreeJ: an ImageJ plugin for interactive cell lineage reconstruction from static images	102
Orchid2024: A cultivar-level dataset and methodology for fine-grained classification of Chinese Cymbidium Orchids	88
Stability investigation of air-dried olive ribo nucleic acids for metavirome studies	72
A novel method for extraction of high purity and high production Phytophthora sojae oospores	70
Fast estimation of plant growth dynamics using deep neural networks	66
A deep learning approach to track Arabidopsis seedlings’ circumnutation from time-lapse videos	60
Complementarity of Raman and Infrared spectroscopy for rapid characterization of fucoidan extracts	54
Estimation of cotton canopy parameters based on unmanned aerial vehicle (UAV) oblique photography	52
Small-scale sequencing enables quality assessment of Ribo-Seq data: an example from Arabidopsis cell culture	50
Non-destructive real-time monitoring of underground root development with distributed fiber optic sensing	47
Coconut tree modeling based on abiotic factors and modified cosserat rod theory	46
Targeted gene deletion with SpCas9 and multiple guide RNAs in Arabidopsis thaliana: four are better than two	46
An automated method for stem diameter measurement based on laser module and deep learning	43
The semi-automated development of plant cell wall finite element models	42
Classification of multi-year and multi-variety pumpkin seeds using hyperspectral imaging technology and three-dimensional convolutional neural network	42
The isolation strategy and chemical analysis of oil cells from Asari Radix et Rhizoma	39
Orthogonal control of gene expression in plants using synthetic promoters and CRISPR-based transcription factors	39
The influence of water content on the longitudinal modulus of elasticity of maize stalk pith and rind tissues	35
Real-time monitoring of Ralstonia solanacearum infection progress in tomato and Arabidopsis using bioluminescence imaging technology	35
Optimized synthesis of layered double hydroxide lactate nanosheets and their biological effects on Arabidopsis seedlings	35
Electrical impedance spectroscopy (EIS) in plant roots research: a review	34
Non-destructive detection of early wheat germination via deep learning-optimized terahertz imaging	33
Determination of phosphorus compounds in plant tissues: from colourimetry to advanced instrumental analytical chemistry	33
Detection of TuMV by a toehold switch sensor coupled with NASBA amplification in Pseudostellaria heterophylla	32
pSIG plasmids, MoClo-compatible vectors for efficient production of chimeric double-stranded RNAs in Escherichia coli HT115 (DE3) strain	31

Local mapping of root orientation traits by X-ray micro-CT and 3d image analysis: A study case on carrot seedlings grown in simulated vs real weightlessness	30
Optimization of ribosome profiling in plants including structural analysis of rRNA fragments	29
Innovation of strip fertilization planting for rice straw crushing with back-throwing and interrow-laying	29
RiboPlotR: a visualization tool for periodic Ribo-seq reads	29
Combination of long-term 13CO2 labeling and isotopolog profiling allows turnover analysis of photosynthetic pigments in Arabidopsis leaves	28
Improved wood species identification based on multi-view imagery of the three anatomical planes	27
Improved estimation of forage nitrogen in alpine grassland by integrating Sentinel-2 and SIF data	27
Synchrotron tomography applications in agriculture and food sciences research: a review	27
Novel in silico screening system for plant defense activators using deep learning-based prediction of reactive oxygen species accumulation	27
Meta-analysis of the role of zinc in coordinating absorption of mineral elements in wheat seedlings	26
A simple and efficient method to quantify the cell parameters of the seed coat, embryo and silique wall in rapeseed	26
High-throughput estimation of allele frequencies using combined pooled-population sequencing and haplotype-based data processing	26
A method of two-dimensional correlation spectroscopy combined with residual neural network for comparison and differentiation of medicinal plants raw materials superior to traditional machine learning	25
GrainNet: efficient detection and counting of wheat grains based on an improved YOLOv7 modeling	25
An improved bacterial mRNA enrichment strategy in dual RNA sequencing to unveil the dynamics of plant-bacterial interactions	25
Automated, image-based disease measurement for phenotyping resistance to soybean frogeye leaf spot	25
Development and application of a virus-induced gene silencing protocol for the study of gene function in narrow-leafed lupin	24
DWTFormer: a frequency-spatial features fusion model for tomato leaf disease identification	24
Evaluation of deep learning for predicting rice traits using structural and single-nucleotide genomic variants	23
A high-throughput phenotyping method for sugarcane rind penetrometer resistance and breaking force characterization by near-infrared spectroscopy	23
Improvement of germination rate and hybridization to facilitate breeding of an industrial oil crop, Euphorbia lagascae Spreng	23
SYMPATHIQUE: image-based tracking of symptoms and monitoring of pathogenesis to decompose quantitative disease resistance in the field	23
A new and effective method to induce infection of Phyllachora maydis into corn for tar spot studies in controlled environments	23
A comparative study on point cloud down-sampling strategies for deep learning-based crop organ segmentation	22
A statistical method for high-throughput emergence rate calculation for soybean breeding plots based on field phenotypic characteristics	21
A rapid and non-destructive method for spatial–temporal quantification of colonization by Pseudomonas syringae pv. tomato DC3000 in Arabidopsis and tomato	21
Using near-infrared spectroscopy to predict nitrogen and phosphorus concentrations of herbarium specimens under different storage conditions	21
Inter-row navigation line detection for cotton with broken rows	21
An advanced method for the release, enrichment and purification of high-quality Arabidopsis thaliana rosette leaf trichomes enables profound insights into the trichome proteome	21
ScAnalyzer: an image processing tool to monitor plant disease symptoms and pathogen spread in Arabidopsis thaliana leaves	21
Installation and imaging of thousands of minirhizotrons to phenotype root systems of field-grown plants	21
Automatic rape flower cluster counting method based on low-cost labelling and UAV-RGB images	20
Machine learning provides specific detection of salt and drought stresses in cucumber based on miRNA characteristics	20
Spectral estimation of the aboveground biomass of cotton under water–nitrogen coupling conditions	19
An electrophoretic mobility shift assay using the protein isolated from host plants	19
RGB image-based method for phenotyping rust disease progress in pea leaves using R	19
Scoring the number of B chromosomes in Zea mays L. using droplet digital PCR assay	19
Optimization of preparation conditions for Salsola laricifolia protoplasts using response surface methodology and artificial neural network modeling	19
Evaluation of an intelligent artificial climate chamber for high-throughput crop phenotyping in wheat	19
Assembly and operation of an imaging system for long-term monitoring of bioluminescent and fluorescent reporters in plants	19
Rapid Ragi: A speed breeding protocol for finger millet	18
Wheat physiology predictor: predicting physiological traits in wheat from hyperspectral reflectance measurements using deep learning	18
BerryPortraits: Phenotyping Of Ripening Traits in cranberry (Vaccinium macrocarpon Ait.) with YOLOv8	18
WheatLFANet: in-field detection and counting of wheat heads with high-real-time global regression network	18
A hybrid CNN–SVM classifier for weed recognition in winter rape field	18
Ribozyme-mediated CRISPR/Cas9 gene editing in pyrethrum (Tanacetum cinerariifolium) hairy roots using a RNA polymerase II-dependent promoter	18
In vitro micropropagation protocols for two endangered Dianthus species - via in vitro culture for conservation and recultivation purposes	18
A compact deep learning approach integrating depthwise convolutions and spatial attention for plant disease classification	18
Quantitative phenotyping of crop roots with spectral electrical impedance tomography: a rhizotron study with optimized measurement design	18
Mapping of cotton bolls and branches with high-granularity through point cloud segmentation	18

Detection and characterization of spike architecture based on deep learning and X-ray computed tomography in barley	18
Statistical analysis of organelle movement using state-space models	18
Refining bulk segregant analyses: ontology-mediated discovery of flowering time genes in Brassica oleracea	18
Insights into lncRNA-mediated regulatory networks in Hevea brasiliensis under anthracnose stress	17
Estimation of plant height and yield based on UAV imagery in faba bean (Vicia faba L.)	17
Spatial and Texture Analysis of Root System distribution with Earth mover’s Distance (STARSEED)	17
Assessing data analysis techniques in a high-throughput meiosis-like induction detection system	17
Pre-trained protein language model sheds new light on the prediction of Arabidopsis protein–protein interactions	17
Sorting biotic and abiotic stresses on wild rocket by leaf-image hyperspectral data mining with an artificial intelligence model	17
Genotyping of polyploid plants using quantitative PCR: application in the breeding of white-fleshed triploid loquats (Eriobotrya japonica)	16
Optimizing cannabis cultivation: an efficient in vitro system for flowering induction	16
Acceleration of wheat breeding: enhancing efficiency and practical application of the speed breeding system	16
Transmembrane potential, an indicator in situ reporting cellular senescence and stress response in plant tissues	16
SeedSeg: image-based transgenic seed counting for segregation analysis of T-DNA loci	16
A method to determine antifungal activity in seed exudates by nephelometry	15
Correction: Whole mount multiplexed visualization of DNA, mRNA, and protein in plant-parasitic nematodes	15
A vector-free gene interference system using delaminated Mg–Al-lactate layered double hydroxide nanosheets as molecular carriers to intact plant cells	15
A high-throughput approach for quantifying turgor loss point in grapevine	15
A custom library construction method for super-resolution ribosome profiling in Arabidopsis	15
Automating high-throughput screening for anthracnose resistance in common bean using allele specific PCR	15
Mapping and quantifying unique branching structures in lentil (Lens culinaris Medik.)	14
Intelligent identification on cotton verticillium wilt based on spectral and image feature fusion	14
Low-cost and reliable substrate-based phenotyping platform for screening salt tolerance of cutting propagation-dependent grass, paspalum vaginatum	14
Tracking deuterium uptake in hydroponically grown maize roots using correlative helium ion microscopy and Raman micro-spectroscopy	14
A novel method for measuring heat injury in leaves provides insights into the sequence of processes of heat injury development	14
Monitoring of plant water uptake by measuring root dielectric properties on a fine timescale: diurnal changes and response to leaf excision	14
Mitochondrial DNA editing in potato through mitoTALEN and mitoTALECD: molecular characterization and stability of editing events	14
Eggsplorer: a rapid plant–insect resistance determination tool using an automated whitefly egg quantification algorithm	14
BioCurve Analyzer: a web-based shiny app for analyzing biological response curves	14
A deep learning approach for deriving wheat phenology from near-surface RGB image series using spatiotemporal fusion	14
Sensor-based phenotyping of above-ground plant-pathogen interactions	14
DeepCob: precise and high-throughput analysis of maize cob geometry using deep learning with an application in genebank phenomics	14
AraDQ: an automated digital phenotyping software for quantifying disease symptoms of flood-inoculated Arabidopsis seedlings	14
CRISPR-Cas13a as a next-generation tool for rapid and precise plant RNA virus diagnostics	14
Efficient mutagenesis and genotyping of maize inbreds using biolistics, multiplex CRISPR/Cas9 editing, and Indel-Selective PCR	14
An efficient chromatin immunoprecipitation (ChIP) protocol for studying histone modifications in peach reproductive tissues	14
Characterizing the effects of different chemicals on stem bending of cut snapdragon flower	13
Publisher Correction: New improvements in grapevine genome editing: high efficiency biallelic homozygous knock-out from regenerated plantlets by using an optimized zCas9i	13
Segmentation and counting of wheat spike grains based on deep learning and textural feature	13
CMSAF-Net: integrative network design with enhanced decoder for precision segmentation of pear leaf diseases	13
Apnet: Lightweight network for apricot tree disease and pest detection in real-world complex backgrounds	13
Determining water status of walnut orchards using the crop water stress index and canopy temperature measurements	13
Advancing radiation-induced mutant screening through high-throughput technology: a preliminary evaluation of mutant screening in Arabidopsis thaliana	13
Phenotyping seedlings for selection of root system architecture in alfalfa (Medicago sativa L.)	13
Accelerating eucalypt clone selection pipeline via cloned progeny trials and molecular data	13
A CNN model for early detection of pepper Phytophthora blight using multispectral imaging, integrating spectral and textural information	13
Culture types and period impact gametophyte morphogenesis and sporophyte formation of eastern bracken	13
A novel selection model based on multivariate methods and arbitrary genetic parameters: a case study on tomato families	13
One pattern analysis (OPA) for the quantitative determination of protein interactions in plant cells	13
Simple and efficient isolation of plant genomic DNA using magnetic ionic liquids	13
RP-DETR: end-to-end rice pests detection using a transformer	13
A non-destructive approach for measuring rice panicle-level photosynthetic responses using 3D-image reconstruction	12
Utilizing X-ray radiography for non-destructive assessment of paddy rice grain quality traits	12
A rapid and efficient in vivo inoculation method for introducing tree stem canker pathogens onto leaves: suitable for large-scale assessment of resistance in poplar breeding progeny	12
Dual discriminator GAN-based synthetic crop disease image generation for precise crop disease identification	12
Establishment of a low-temperature immersion method for extracting high-activity and high-purity mitochondria from Syntrichia caninervis Mitt.	12
Identifying and mapping individual medicinal plant Lamiophlomis rotata at high elevations by using unmanned aerial vehicles and deep learning	12
Correction: Rapid and cost-effective molecular karyotyping in wheat, barley, and their crossprogeny by chromosome-specific multiplex PCR	12
SSR_VibraProfiler: a Python package for accurate classification of varieties using SSRs with intra-variety specificity and inter-variety polymorphism	12
Combining novel feature selection strategy and hyperspectral vegetation indices to predict crop yield	12
Improved genomic prediction using machine learning with Variational Bayesian sparsity	12
De novo assembly provides new insights into the evolution of Elaeagnus angustifolia L.	12
A cell P system with membrane division and dissolution rules for soybean leaf disease recognition	12
Low-cost and automated phenotyping system “Phenomenon” for multi-sensor in situ monitoring in plant in vitro culture	11
Establishment of an NPK nutrient monitor system in yield-graded cotton petioles under drip irrigation	11
A novel approach integrating multispectral imaging and machine learning to identify seed maturity and vigor in smooth bromegrass	11
Characterization of leaf surface phenotypes based on light interaction	11
Gray mold and anthracnose disease detection on strawberry leaves using hyperspectral imaging	11
ShinyCore: An R/Shiny program for establishing core collection based on single nucleotide polymorphism data	11
DNA-free high-quality RNA extraction from 39 difficult-to-extract plant species (representing seasonal tissues and tissue types) of 32 families, and its validation for downstream molecular application	11
Development of a highly efficient virus-free regeneration system of Salvia miltiorrhiza from Sichuan using apical meristem as explants	11
Clarification of the infection pattern of Xanthomonas citri subsp. citri on citrus fruit by artificial inoculation	11
YOLOV8-CMS: a high-accuracy deep learning model for automated citrus leaf disease classification and grading	11
PhenoTrack3D: an automatic high-throughput phenotyping pipeline to track maize organs over time	11
Yield estimation of high-density cotton fields using low-altitude UAV imaging and deep learning	11
Deep learning for detecting herbicide weed control spectrum in turfgrass	11
Accelerating leaf area measurement using a volumetric approach	11
RhizoMAP: a comprehensive, nondestructive, and sensitive platform for metabolic imaging of the rhizosphere	11
Non-wounding contact-based Inoculation of fruits with fungal pathogens in postharvest	11
Photolysis of caged cytokinin in single cells of Arabidopsis thaliana	10

Development of a semi-open chamber system for the gas exchange measurement of whole-canopy under steady and unsteady states in cucumber seedlings	10
Quality assurance of hyperspectral imaging systems for neural network supported plant phenotyping	10
Meta-learning prediction of physical and chemical properties of magnetized water and fertilizer based on LSTM	10
Overexpressing Arabidopsis thaliana ACBP6 in transgenic rapid-cycling Brassica napus confers cold tolerance	10
Swin-Unet++: a study on phenotypic parameter analysis of cabbage seedling roots	10
Rapid real-time quantitative colorimetric LAMP methodology for field detection of Verticillium dahliae in crude olive-plant samples	10
Developing non-invasive 3D quantificational imaging for intelligent coconut analysis system with X-ray	10
Segmentation of structural parts of rosebush plants with 3D point-based deep learning methods	10
The mechanisms and prediction of non-structural carbohydrates accretion and depletion after mechanical wounding in slash pine (Pinus elliottii) using near-infrared reflectance spectroscopy	10
In-vivo Raman microspectroscopy reveals differential nitrate concentration in different developmental zones in Arabidopsis roots	10
NRTPredictor: identifying rice root cell state in single-cell RNA-seq via ensemble learning	10
Opening the black box: explainable deep-learning classification of wood microscopic image of endangered tree species	10
Soybean seed pest damage detection method based on spatial frequency domain imaging combined with RL-SVM	10