Plant Methods

Article	Citations
Protocol: a simple method for biosensor visualization of bacterial quorum sensing and quorum quenching interaction on Medicago roots	102
Estimation of chlorophyll content in rice canopy leaves using 3D radiative transfer modeling and unmanned aerial hyperspectral images	99
An efficient screening system of disease-resistant genes from wild apple, Malus sieversii in response to Valsa mali pathogenic fungus	95
The influence of water content on the longitudinal modulus of elasticity of maize stalk pith and rind tissues	71
Soybean leaf estimation based on RGB images and machine learning methods	65
Estimation of cotton canopy parameters based on unmanned aerial vehicle (UAV) oblique photography	61
A non-destructive approach for measuring rice panicle-level photosynthetic responses using 3D-image reconstruction	57
Characterizing reference genes for high-fidelity gene expression analysis under different abiotic stresses and elicitor treatments in fenugreek leaves	57
Cryopreservation of sessile oak (Quercus petraea (Matt.) Liebl.) plumules using aluminium cryo-plates: influence of cryoprotection and drying	55
A novel selection model based on multivariate methods and arbitrary genetic parameters: a case study on tomato families	51
Optimizing PGRs for in vitro shoot proliferation of pomegranate with bayesian-tuned ensemble stacking regression and NSGA-II: a comparative evaluation of machine learning models	50
Methods to optimize optical sensing of biotic plant stress – combined effects of hyperspectral imaging at night and spatial binning	49
Karst vegetation coverage detection using UAV multispectral vegetation indices and machine learning algorithm	46
An automated method for stem diameter measurement based on laser module and deep learning	46
A novel visual marker to distinguish haploids from doubled haploids in rice (Oryza sativa, L) at early growth stages	45
Determination of phosphorus compounds in plant tissues: from colourimetry to advanced instrumental analytical chemistry	43
Axial variation in flexural stiffness of plant stem segments: measurement methods and the influence of measurement uncertainty	42
Tensor methods in data analysis of chromatography/mass spectroscopy-based plant metabolomics	41
Apnet: Lightweight network for apricot tree disease and pest detection in real-world complex backgrounds	40
Accelerating eucalypt clone selection pipeline via cloned progeny trials and molecular data	39
Advanced screening methods for assessing motility and hatching in plant-parasitic nematodes	38
Application of machine learning algorithms and feature selection in rapeseed (Brassica napus L.) breeding for seed yield	37
Genetic transformation of the oilseed crop camelina using immature zygotic embryos	35
Hyperspectral imaging-based classification of rice leaf blast severity over multiple growth stages	35
Corn360: a method for quantification of corn kernels	34

Versatile DNA extraction from diverse plant taxa using ionic liquids and magnetic ionic liquids: a methodological breakthrough for enhanced sample utility	32
Rapid identification of mutations caused by fast neutron bombardment in Medicago truncatula	31
Computer vision-based wood identification and its expansion and contribution potentials in wood science: A review	31
A systematic high-throughput phenotyping assay for sugarcane stalk quality characterization by near-infrared spectroscopy	29
Electrical impedance spectroscopy (EIS) in plant roots research: a review	29
Culture types and period impact gametophyte morphogenesis and sporophyte formation of eastern bracken	29
A CNN model for early detection of pepper Phytophthora blight using multispectral imaging, integrating spectral and textural information	28
Terrestrial laser scanning and low magnetic field digitization yield similar architectural coarse root traits for 32-year-old Pinus ponderosa trees	28
Real-time monitoring of Ralstonia solanacearum infection progress in tomato and Arabidopsis using bioluminescence imaging technology	28
Can allele-specific loop-mediated isothermal amplification be used for rapid detection of target-site herbicide resistance in Lolium spp.?	27
Study on canopy extraction method for narrowband spectral images based on superpixel color gradation skewness distribution features	27
HairNet2: deep learning to quantify cotton leaf hairiness, a complex genetic and environmental trait	27
Orchid2024: A cultivar-level dataset and methodology for fine-grained classification of Chinese Cymbidium Orchids	27
Applying spectral fractal dimension index to predict the SPAD value of rice leaves under bacterial blight disease stress	27
Combining novel feature selection strategy and hyperspectral vegetation indices to predict crop yield	27
Ripening dynamics revisited: an automated method to track the development of asynchronous berries on time-lapse images	27
High-throughput phenotyping for non-destructive estimation of soybean fresh biomass using a machine learning model and temporal UAV data	26
Exploring the potential of microscopic hyperspectral, Raman, and LIBS for nondestructive quality assessment of diverse rice samples	26
Species-specific basecallers improve actual accuracy of nanopore sequencing in plants	25
Correction: Maximizing efficiency in sunflower breeding through historical data optimization	25
Correction: Revisiting superiority and stability metrics of cultivar performances using genomic data: derivations of new estimators	25
A highly efficient protocol for isolation of protoplast from China, Assam and Cambod types of tea plants [Camellia sinensis (L.) O. Kuntze]	24
Publisher Correction: New improvements in grapevine genome editing: high efficiency biallelic homozygous knock-out from regenerated plantlets by using an optimized zCas9i	24
The isolation strategy and chemical analysis of oil cells from Asari Radix et Rhizoma	23
Correction: YOLO POD: a fast and accurate multi-task model for dense Soybean Pod counting	23
A handheld device for measuring the diameter at breast height of individual trees using laser ranging and deep-learning based image recognition	23
Using a thermal gradient table to study plant temperature signalling and response across a temperature spectrum	22
Temporal resolution trumps spectral resolution in UAV-based monitoring of cereal senescence dynamics	22
Methodology: non-invasive monitoring system based on standing wave ratio for detecting water content variations in plants	22
Combining Fourier-transform infrared spectroscopy and multivariate analysis for chemotyping of cell wall composition in Mungbean (Vigna radiata (L.) Wizcek)	22
Simple and efficient isolation of plant genomic DNA using magnetic ionic liquids	22
In vivo characterisation of field pea stem wall thickness using optical coherence tomography	21
Systematic investigation and validation of peanut genetic transformation via the pollen tube injection method	21
De novo assembly provides new insights into the evolution of Elaeagnus angustifolia L.	20
Highly efficient Agrobacterium rhizogenes-mediated transformation for functional analysis in woodland strawberry	20
A comprehensive review of in planta stable transformation strategies	20
Classification of multi-year and multi-variety pumpkin seeds using hyperspectral imaging technology and three-dimensional convolutional neural network	20
A novel method for extraction of high purity and high production Phytophthora sojae oospores	20
Identification of the initial water-site and movement in Gleditsia sinensis seeds and its relation to seed coat structure	19
Detection of Cucumber green mottle mosaic virus in low-concentration virus-infected seeds by improved one-step pre-amplification RT-qPCR	19
Protocol: analytical methods for visualizing the indolic precursor network leading to auxin biosynthesis	19
Small-scale sequencing enables quality assessment of Ribo-Seq data: an example from Arabidopsis cell culture	19
A quantitative method to measure geranylgeranyl diphosphate (GGPP) and geranylgeranyl monophosphate (GGP) in tomato (Solanum lycopersicum) fruit	19
High-throughput phenotyping allows the selection of soybean genotypes for earliness and high grain yield	18
Stability investigation of air-dried olive ribo nucleic acids for metavirome studies	18
Improved genomic prediction using machine learning with Variational Bayesian sparsity	18
Characterizing the effects of different chemicals on stem bending of cut snapdragon flower	18
AprGPD: the apricot genomic and phenotypic database	18
Automatic freezing-tolerant rapeseed material recognition using UAV images and deep learning	18
Prediction accuracy and repeatability of UAV based biomass estimation in wheat variety trials as affected by variable type, modelling strategy and sampling location	17

VA-TIRFM-based SM kymograph analysis for dwell time and colocalization of plasma membrane protein in plant cells	16
Targeted gene deletion with SpCas9 and multiple guide RNAs in Arabidopsis thaliana: four are better than two	16
A device for the controlled cooling and freezing of excised plant specimens during magnetic resonance imaging	15
Metric learning for image-based flower cultivars identification	15
Improved estimation of aboveground biomass of regional coniferous forests integrating UAV-LiDAR strip data, Sentinel-1 and Sentinel-2 imageries	15
Non-destructive real-time monitoring of underground root development with distributed fiber optic sensing	15
TreeJ: an ImageJ plugin for interactive cell lineage reconstruction from static images	15
Simultaneous determination of protoporphyrin IX and magnesium protoporphyrin IX in Arabidopsis thaliana and Camellia sinensis using UPLC-MS/MS	15
A robust and efficient automatic method to segment maize FASGA stained stem cross section images to accurately quantify histological profile	15
Mix-and-match: an improved, fast and accessible protocol for hypocotyl micrografting of Arabidopsis seedlings with systemic ACC responses as a case study	15
Micro computed tomography analysis of barley during the first 24 hours of germination	15
Full-length transcriptome sequences by a combination of sequencing platforms applied to isoflavonoid and triterpenoid saponin biosynthesis of Astragalus mongholicus Bunge	15
Efficient transformation of the isolated microspores of Chinese cabbage (Brassica rapa L. ssp. pekinensis) by particle bombardment	15
One pattern analysis (OPA) for the quantitative determination of protein interactions in plant cells	15
A deep learning approach to track Arabidopsis seedlings’ circumnutation from time-lapse videos	15
Roughness measurement of leaf surface based on shape from focus	15
Early detection of verticillium wilt in eggplant leaves by fusing five image channels: a deep learning approach	14
Efficient isolation and purification of tissue-specific protoplasts from tea plants (Camellia sinensis (L.) O. Kuntze)	14
A cassava common mosaic virus vector for virus-induced gene silencing in cassava	14
An efficient grafting method for phytoplasma transmission in Catharanthus roseus	14
The semi-automated development of plant cell wall finite element models	14
A model for genuineness detection in genetically and phenotypically similar maize variety seeds based on hyperspectral imaging and machine learning	14
Fast estimation of plant growth dynamics using deep neural networks	14
Segmentation and counting of wheat spike grains based on deep learning and textural feature	14
Phenotyping seedlings for selection of root system architecture in alfalfa (Medicago sativa L.)	13
Semi-supervised few-shot learning approach for plant diseases recognition	13
A method to experimentally clamp leaf water content to defined values to assess its effects on apoplastic pH	13
Determining water status of walnut orchards using the crop water stress index and canopy temperature measurements	13
Improving the prediction performance of leaf water content by coupling multi-source data with machine learning in rice (Oryza sativa L.)	13
Complementarity of Raman and Infrared spectroscopy for rapid characterization of fucoidan extracts	13
Qualitative and quantitative evaluation of thylakoid complexes separated by Blue Native PAGE	13
Identifying and mapping individual medicinal plant Lamiophlomis rotata at high elevations by using unmanned aerial vehicles and deep learning	13
Profiling of 1-aminocyclopropane-1-carboxylic acid and selected phytohormones in Arabidopsis using liquid chromatography-tandem mass spectrometry	13
Optimizing speed breeding and seed/pod chip based genotyping techniques in pigeonpea: A way forward for high throughput line development	13
Soybean cyst nematode detection and management: a review	13
Highly efficient Agrobacterium rhizogenes-mediated hairy root transformation for gene functional and gene editing analysis in soybean	13
Optimized synthesis of layered double hydroxide lactate nanosheets and their biological effects on Arabidopsis seedlings	12
Optimization of ribosome profiling in plants including structural analysis of rRNA fragments	12
The genetic puzzle of multicopy genes: challenges and troubleshooting	12
Leaf area index estimation model for UAV image hyperspectral data based on wavelength variable selection and machine learning methods	12
Effects of cushion box and closed let-down ladder usage on damage to corn during handling: physiological deterioration	12
Orthogonal control of gene expression in plants using synthetic promoters and CRISPR-based transcription factors	12
A streamlined guide RNA screening system for genome editing in Sorghum bicolor	12
Applying quantitative spatial phenotypes analysis to the investigation of peltate glandular trichomes development pattern in Perilla frutescens	12
A simple and efficient method to quantify the cell parameters of the seed coat, embryo and silique wall in rapeseed	11
Mechanism of self-recovery of hydrophobicity after surface damage of lotus leaf	11
Identifying rice field weeds from unmanned aerial vehicle remote sensing imagery using deep learning	11
Correction: A deep learning model for predicting risks of crop pests and diseases from sequential environmental data	11
Clarification of the infection pattern of Xanthomonas citri subsp. citri on citrus fruit by artificial inoculation	11
Correction: Rapid and cost-effective molecular karyotyping in wheat, barley, and their crossprogeny by chromosome-specific multiplex PCR	11
Gray mold and anthracnose disease detection on strawberry leaves using hyperspectral imaging	11
Semantic segmentation of plant roots from RGB (mini-) rhizotron images—generalisation potential and false positives of established methods and advanced deep-learning models	11
Quantitative MRI imaging of parenchyma and venation networks in Brassica napus leaves: effects of development and dehydration	11
Correction: Soybean seed pest damage detection method based on spatial frequency domain imaging combined with RL-SVM	11
Field cabbage detection and positioning system based on improved YOLOv8n	11
Rice bacterial blight resistant cultivar selection based on visible/near-infrared spectrum and deep learning	11
An exploration of the influence of ZnO NPs treatment on germination of radish seeds under salt stress based on the YOLOv8-R lightweight model	11
Accelerating leaf area measurement using a volumetric approach	11
A novel in-situ-process technique constructs whole circular cpDNA library	11
A cell P system with membrane division and dissolution rules for soybean leaf disease recognition	11
Local mapping of root orientation traits by X-ray micro-CT and 3d image analysis: A study case on carrot seedlings grown in simulated vs real weightlessness	10
UAV rice panicle blast detection based on enhanced feature representation and optimized attention mechanism	10
UAS-based MT-YOLO model for detecting missed tassels in hybrid maize detasseling	10
Computational fluid dynamics simulation experimental verification and analysis of droplets deposition behaviour on vibrating pear leaves	10
Rapid in-solution preparation of somatic and meiotic plant cell nuclei for high-quality 3D immunoFISH and immunoFISH-GISH	10
Advances in micropropagation, somatic embryogenesis, somatic hybridizations, genetic transformation and cryopreservation for Passiflora improvement	10
3D-CNN detection of systemic symptoms induced by different Potexvirus infections in four Nicotiana benthamiana genotypes using leaf hyperspectral imaging	10
A rapid and efficient in vivo inoculation method for introducing tree stem canker pathogens onto leaves: suitable for large-scale assessment of resistance in poplar breeding progeny	10
Early real-time detection algorithm of tomato diseases and pests in the natural environment	10
Optimization of the selection of suitable harvesting periods for medicinal plants: taking Dendrobium officinale as an example	10
Chemoinformatics-driven classification of Angiosperms using sulfur-containing compounds and machine learning algorithm	10
A new biotechnology for in-planta gene editing and its application in promoting flavonoid biosynthesis in bamboo leaves	10
Wheat leaf area index prediction using data fusion based on high-resolution unmanned aerial vehicle imagery	10
Revolutionizing automated pear picking using Mamba architecture	10
A toolkit to rapidly modify root systems through single plant selection	10
PhenoTrack3D: an automatic high-throughput phenotyping pipeline to track maize organs over time	10
A pin-based probe for electronic moisture meters to determine moisture content in a single wheat kernel	10
Establishment of an efficient cotton root protoplast isolation protocol suitable for single-cell RNA sequencing and transient gene expression analysis	10
Hyperspectral imaging for pest symptom detection in bell pepper	9
Maize-IAS: a maize image analysis software using deep learning for high-throughput plant phenotyping	9

Cryopreservation of Abies alba × A. numidica and Pinus nigra embryogenic tissues by stepwise dehydration method	9
A procedure for Dex-induced gene transactivation in Arabidopsis ovules	9
An improved bacterial mRNA enrichment strategy in dual RNA sequencing to unveil the dynamics of plant-bacterial interactions	9
A highly efficient regeneration, genetic transformation system and induction of targeted mutations using CRISPR/Cas9 in Lycium ruthenicum	9
An open-source controller to build a dynamic light intensity setup	9
Innovation of strip fertilization planting for rice straw crushing with back-throwing and interrow-laying	9
Segmentation and characterization of macerated fibers and vessels using deep learning	9
Standardization of electrolyte leakage data and a novel liquid nitrogen control improve measurements of cold hardiness in woody tissue	9
RiboPlotR: a visualization tool for periodic Ribo-seq reads	9
A fast method to evaluate in a combinatorial manner the synergistic effect of different biostimulants for promoting growth or tolerance against abiotic stress	9