OOIR: Observatory of International Research

Papers

(The TQCC of Algorithms for Molecular Biology is 5. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-09-01 to 2025-09-01.)

Article	Citations
Mem-based pangenome indexing for k-mer queries	33
Unifying duplication episode clustering and gene-species mapping inference	24
Efficient gene orthology inference via large-scale rearrangements	17
Fast, parallel, and cache-friendly suffix array construction	13
Binning long reads in metagenomics datasets using composition and coverage information	11
On the complexity of non-binary tree reconciliation with endosymbiotic gene transfer	10
Constructing phylogenetic networks via cherry picking and machine learning	9
Embedding gene trees into phylogenetic networks by conflict resolution algorithms	9
Quartets enable statistically consistent estimation of cell lineage trees under an unbiased error and missingness model	8
Correction: Heuristic shortest hyperpaths in cell signaling hypergraphs	8
Swiftly identifying strongly unique k-mers	8
AlfaPang: alignment free algorithm for pangenome graph construction	8
On a greedy approach for genome scaffolding	7
Estimating similarity and distance using FracMinHash	6
Approximation algorithm for rearrangement distances considering repeated genes and intergenic regions	6
Faster computation of left-bounded shortest unique substrings	6
Unbiased anchors for reliable genome-wide synteny detection	6
New algorithms for structure informed genome rearrangement	6
Reconstructing rearrangement phylogenies of natural genomes	6
Two metrics on rooted unordered trees with labels	5
Recombinations, chains and caps: resolving problems with the DCJ-indel model	5
Fractional hitting sets for efficient multiset sketching	5