OOIR: Observatory of International Research

Papers

(The TQCC of Algorithms for Molecular Biology is 5. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-06-01 to 2026-06-01.)

Article	Citations
Improving spliced alignment by modeling splice sites with deep learning	35
Unifying duplication episode clustering and gene-species mapping inference	24
Mem-based pangenome indexing for k-mer queries	19
Efficient gene orthology inference via large-scale rearrangements	13
Binning long reads in metagenomics datasets using composition and coverage information	13
Fast, parallel, and cache-friendly suffix array construction	13
On the complexity of non-binary tree reconciliation with endosymbiotic gene transfer	12
Pattern matching with Elastic-Degenerate strings and Elastic-Founder graphs	12
Correction: Heuristic shortest hyperpaths in cell signaling hypergraphs	9
AlfaPang: alignment free algorithm for pangenome graph construction	8
On a greedy approach for genome scaffolding	8
Quartets enable statistically consistent estimation of cell lineage trees under an unbiased error and missingness model	8
Constructing phylogenetic networks via cherry picking and machine learning	8
Swiftly identifying strongly unique k-mers	8
New algorithms for structure informed genome rearrangement	7
Recombinations, chains and caps: resolving problems with the DCJ-indel model	6
Faster computation of left-bounded shortest unique substrings	6
Unbiased anchors for reliable genome-wide synteny detection	6
Estimating similarity and distance using FracMinHash	6
Reconstructing rearrangement phylogenies of natural genomes	5
Two metrics on rooted unordered trees with labels	5
Fractional hitting sets for efficient multiset sketching	5