Evolutionary Applications

Article	Citations
Genetic mixing for population management: From genetic rescue to provenancing	90
Socio‐eco‐evolutionary dynamics in cities	87
The evolutionary consequences of human–wildlife conflict in cities	75
Prospects and limitations of genomic offset in conservation management	75
The genic view of hybridization in the Anthropocene	61
Phenotypic plasticity under rapid global changes: The intrinsic force for future seagrasses survival	59
Identifying key questions in the ecology and evolution of cancer	58
Making sense of Integrated Pest Management (IPM) in the light of evolution	57
Genetic load has potential in large populations but is realized in small inbred populations	57
Urbanization is associated with shifts in bumblebee body size, with cascading effects on pollination	54
The evolutionary dynamics of biological invasions: A multi‐approach perspective	50
Recent and rapid anthropogenic habitat fragmentation increases extinction risk for freshwater biodiversity	46
On the estimation of inbreeding depression using different measures of inbreeding from molecular markers	37
Why women have more autoimmune diseases than men: An evolutionary perspective	36
Endometriosis and polycystic ovary syndrome are diametric disorders	35
Seeing the forest for the trees: Assessing genetic offset predictions from gradient forest	33
Genetic guidelines for translocations: Maintaining intraspecific diversity in the lion (Panthera leo)	33
Increased accuracy of genomic predictions for growth under chronic thermal stress in rainbow trout by prioritizing variants from GWAS using imputed sequence data	33
Comparative genomics approach to evolutionary process connectivity	32
Epigenomic modifications induced by hatchery rearing persist in germ line cells of adult salmon after their oceanic migration	32
An epigenetic clock to estimate the age of living beluga whales	32
Global phylogeography and invasion history of the spotted lanternfly revealed by mitochondrial phylogenomics	31
Growing in the city: Urban evolutionary ecology of avian growth rates	31
Genomic analysis reveals neutral and adaptive patterns that challenge the current management regime for East Atlantic cod Gadus morhua L	30
Insecticide exposure affects intergenerational patterns of DNA methylation in the Colorado potato beetle, Leptinotarsa decemlineata	30

SARS‐CoV‐2, an evolutionary perspective of interaction with human ACE2 reveals undiscovered amino acids necessary for complex stability	30
Contrasted patterns of local adaptation to climate change across the range of an evergreen oak, Quercus aquifolioides	29
Design and analysis of CRISPR‐based underdominance toxin‐antidote gene drives	29
Adaptation to drought is coupled with slow growth, but independent from phenology in marginal silver fir (Abies alba Mill.) populations	28
Cancer therapy: Attempt cure or manage drug resistance?	28
Applying genomics in assisted migration under climate change: Framework, empirical applications, and case studies	27
An evaluation of the potential factors affecting lifetime reproductive success in salmonids	27
Urbanization is associated with modifications in DNA methylation in a small passerine bird	26
Towards evolutionary predictions: Current promises and challenges	26
Genomic selection for resistance to spruce budworm in white spruce and relationships with growth and wood quality traits	25
Population genomics and history of speciation reveal fishery management gaps in two related redfish species (Sebastes mentella and Sebastes fasciatus)	25
Extreme seascape drives local recruitment and genetic divergence in brooding and spawning corals in remote north‐west Australia	25
Size reductions and genomic changes within two generations in wild walleye populations: associated with harvest?	24
First genomic prediction and genome‐wide association for complex growth‐related traits in Rock Bream (Oplegnathus fasciatus)	22
“Andif you gaze long into an abyss, the abyss gazes also into thee”: four morphs of Arctic charr adapting to a depth gradient in Lake Tinnsjøen	22
Natural history collections are critical resources for contemporary and future studies of urban evolution	22
Migration dynamics of an important rice pest: The brown planthopper (Nilaparvata lugens) across Asia—Insights from population genomics	22
Urban evolution comes into its own: Emerging themes and future directions of a burgeoning field	22
Urbanization reduces gene flow but not genetic diversity of stream salamander populations in the New York City metropolitan area	21
Cross‐species transmission of deltacoronavirus and the origin of porcine deltacoronavirus	21
Whole‐exome sequencing reveals a long‐term decline in effective population size of red spruce (Picea rubens)	21
The genomic signal of local environmental adaptation in Aedes aegypti mosquitoes	21
Strong population differentiation in lingcod (Ophiodon elongatus) is driven by a small portion of the genome	21
Negative relationship between thermal tolerance and plasticity in tolerance emerges during experimental evolution in a widespread marine invertebrate	21
Whole‐genome SNP markers reveal conservation status, signatures of selection, and introgression in Chinese Laiwu pigs	21
Evolutionary responses of marine organisms to urbanized seascapes	21
Whole‐genome analyses provide no evidence for dog introgression in Fennoscandian wolf populations	20
Assessing adaptive and plastic responses in growth and functional traits in a 10‐year‐old common garden experiment with pedunculate oak (Quercus robur L.) suggests that directional selection ca	20
Can CRISPR gene drive work in pest and beneficial haplodiploid species?	20
Increasing temperature elevates the variation and spatial differentiation of pesticide tolerance in a plant pathogen	20
Genetic consequences of long‐term small effective population size in the critically endangered pygmy hog	19
Introgression of domesticated salmon changes life history and phenology of a wild salmon population	19
Comparative genomics highlights the importance of drug efflux transporters during evolution of mycoparasitism in Clonostachys subgenus Bionectria (Fungi, Ascomycota, Hypocreales)	19
The dimensions of evolutionary potential in biological conservation	19
Evolution of manipulative microbial behaviors in the rhizosphere	19
Estimating the contribution of Greenland Halibut (Reinhardtius hippoglossoides) stocks to nurseries by means of genotyping‐by‐sequencing: Sex and time matter	19
Eight generations of native seed cultivation reduces plant fitness relative to the wild progenitor population	19
Validation and association of candidate markers for adult migration timing and fitness in Chinook Salmon	19
Mixed‐stock analysis using Rapture genotyping to evaluate stock‐specific exploitation of a walleye population despite weak genetic structure	19
Historic and modern genomes unveil a domestic introgression gradient in a wild red junglefowl population	19
Charting a course for genetic diversity in the UN Decade of Ocean Science	19
Adaptive markers distinguish North and South Pacific Albacore amid low population differentiation	19
Steelhead (Oncorhynchus mykiss) lineages and sexes show variable patterns of association of adult migration timing and age‐at‐maturity traits with two genomic regions	19
Maintenance of variation in virulence and reproduction in populations of an agricultural plant pathogen	19
Genomic selection applications can improve the environmental performance of aquatics: A case study on the heat tolerance of abalone	18
Differential patterns of connectivity in Western Pacific hydrothermal vent metapopulations: A comparison of biophysical and genetic models	18
Gene drive strategies of pest control in agricultural systems: Challenges and opportunities	18
COVID‐19 disruption reveals mass‐tourism pressure on nearshore sea turtle distributions and access to optimal breeding habitat	18
Genomic data support management of anadromous Arctic Char fisheries in Nunavik by highlighting neutral and putatively adaptive genetic variation	18
Effects of global warming on species with temperature‐dependent sex determination: Bridging the gap between empirical research and management	18

Large‐scale mitogenome sequencing reveals consecutive expansions of domestic taurine cattle and supports sporadic aurochs introgression	18
Past, present and future contributions of evolutionary biology to wildlife forensics, management and conservation	17
Conserving the genetic diversity of condemned populations: Optimizing collections and translocation	17
Population genomics of invasive rodents on islands: Genetic consequences of colonization and prospects for localized synthetic gene drive	17
Incomplete bioinformatic filtering and inadequate age and growth analysis lead to an incorrect inference of harvested‐induced changes	17
Human‐modified canids in human‐modified landscapes: The evolutionary consequences of hybridization for grey wolves and free‐ranging domestic dogs	17
How does contemporary selection shape oak phenotypes?	17
Evolution and genetics of bighead and silver carps: Native population conservation versus invasive species control	17
Researching on the fine structure and admixture of the worldwide chicken population reveal connections between populations and important events in breeding history	17
Breeding for adaptation to climate change: genomic selection for drought response in a white spruce multi‐site polycross test	17
Plasticity to ocean warming is influenced by transgenerational, reproductive, and developmental exposure in a coral reef fish	17
Evolutionary mechanisms underpinning fitness response to multiple stressors in Daphnia	16
A genomic amplification affecting a carboxylesterase gene cluster confers organophosphate resistance in the mosquito Aedes aegypti: From genomic characterization to high‐throughput field detect	16
Variable resistance to spinetoram in populations of Thrips palmi across a small area unconnected to genetic similarity	16
How large and diverse are field populations of fungal plant pathogens? The case of Zymoseptoria tritici	16
Multicentric origin and diversification of atp6‐orf79‐like structures reveal mitochondrial gene flows in Oryza rufipogon and Oryza sativa	16
Subspecies hybridization as a potential conservation tool in species reintroductions	16
Symmetric response to competition in binary mixtures of cultivars associates with genetic gain in wheat yield	16
Artificial selection for nonreproductive host killing in a native parasitoid on the invasive pest, Drosophila suzukii	16
Lower bioenergetic costs but similar immune responsiveness under a heat wave in urban compared to rural damselflies	16
A continuously changing selective context on microbial communities associated with fish, from egg to fork	16
Genetic basis of growth, spring phenology, and susceptibility to biotic stressors in maritime pine	15
Long‐term exposure to increasing temperature can offset predicted losses in marine food quality (fatty acids) caused by ocean warming	15
Evolutionary legacy of a forest plantation tree species (Pinus armandii): Implications for widespread afforestation	15
Predation shapes the impact of cancer on population dynamics and the evolution of cancer resistance	15
Barriers and corridors of gene flow in an urbanized tropical reef system	15
Gut microbiomes of bigheaded carps and hybrids provide insights into invasion: A hologenome perspective	15
The ghosts of propagation past: haplotype information clarifies the relative influence of stocking history and phylogeographic processes on contemporary population structure of walleye (Sander vitr	15
Evidence of unidirectional hybridization and second‐generation adult hybrid between the two largest animals on Earth, the fin and blue whales	15
Epigenetics and the city: Non‐parallel DNA methylation modifications across pairs of urban‐forest Great tit populations	15
Marine food web perspective to fisheries‐induced evolution	15
Using multiple sources during reintroduction of a locally extinct population benefits survival and reproduction of an endangered freshwater fish	15
Genetic structure across urban and agricultural landscapes reveals evidence of resource specialization and philopatry in the Eastern carpenter bee, Xylocopa virginica L.	15
Up in the air: Threats to Afromontane biodiversity from climate change and habitat loss revealed by genetic monitoring of the Ethiopian Highlands bat	15
The role of host environment in cancer evolution	15
Multi‐seasonal modelling of plant‐nematode interactions reveals efficient plant resistance deployment strategies	15
Spatial population genetics in heavily managed species: Separating patterns of historical translocation from contemporary gene flow in white‐tailed deer	15
Demonstration of local adaptation in maize landraces by reciprocal transplantation	14
Resolving Peto’s paradox: Modeling the potential effects of size‐related metabolic changes, and of the evolution of immune policing and cancer suppression	14
A comparison of microsatellites and genome‐wide SNPs for the detection of admixture brings the first molecular evidence for hybridization between Mustela eversmanii and M. putorius (Must	14
Evidence for the evolution of thermal tolerance, but not desiccation tolerance, in response to hotter, drier city conditions in a cosmopolitan, terrestrial isopod	14
The relevance of genetic structure in ecotype designation and conservation management	14
Cross‐species transmission of retroviruses among domestic and wild felids in human‐occupied landscapes in Chile	14
Selective sweep analysis reveals extensive parallel selection traits between large white and Duroc pigs	14
Controlling evolutionary dynamics to optimize microbial bioremediation	14
Strategies to improve the accuracy and reduce costs of genomic prediction in aquaculture species	14
Sex‐ and time‐specific parental effects of warming on reproduction and offspring quality in a coral reef fish	14
Genomic population structure of Striped Bass (Morone saxatilis) from the Gulf of St. Lawrence to Cape Fear River	14
Pedal to the metal: Cities power evolutionary divergence by accelerating metabolic rate and locomotor performance	14
Gene flow as a simple cause for an excess of high‐frequency‐derived alleles	14
Dispersal ability predicts spatial genetic structure in native mammals persisting across an urbanization gradient	14
Supporting the adaptive capacity of species through more effective knowledge exchange with conservation practitioners	14
Transcriptional flexibility during thermal challenge corresponds with expanded thermal tolerance in an invasive compared to native fish	14
Whole‐genome resequencing reveals signature of local adaptation and divergence in wild soybean	14
Genomic signatures of artificial selection in the Pacific oyster, Crassostrea gigas	13
Multiple‐batch spawning as a bet‐hedging strategy in highly stochastic environments: An exploratory analysis of Atlantic cod	13
Reticulate evolution as a management challenge: Patterns of admixture with phylogenetic distance in endemic fishes of western North America	13
Implications of size‐selective fisheries on sexual selection	13
Selection against individuals from genetic introgression of escaped farmed salmon in a natural population of Atlantic salmon	13
Movements of transposable elements contribute to the genomic plasticity and species diversification in an asexually reproducing nematode pest	13
Parentage‐based tagging combined with genetic stock identification is a cost‐effective and viable replacement for coded‐wire tagging in large‐scale assessments of marine Chinook salmon fisheries in Br	13
Sarcoptic mange severity is associated with reduced genomic variation and evidence of selection in Yellowstone National Park wolves (Canis lupus)	13
Commercial implementation of genomic selection in Tasmanian Atlantic salmon: Scheme evolution and validation	13
Local adaptation to precipitation in the perennial grass Elymus elymoides: Trade‐offs between growth and drought resistance traits	13
An epigenetic DNA methylation clock for age estimates in Indo‐Pacific bottlenose dolphins (Tursiops aduncus)	13
Rapid morphological change in multiple cichlid ecotypes following the damming of a major clearwater river in Brazil	13
Climate‐induced range shifts shaped the present and threaten the future genetic variability of a marine brown alga in the Northwest Pacific	13
Reduced relative fitness in hatchery‐origin Pink Salmon in two streams in Prince William Sound, Alaska	13
Y‐chromosome haplotypes are associated with variation in size and age at maturity in male Chinook salmon	13
Niche‐neutral theoretic approach to mechanisms underlying the biodiversity and biogeography of human microbiomes	13
Genomic survey of edible cockle (Cerastoderma edule) in the Northeast Atlantic: A baseline for sustainable management of its wild resources	13
Population and seascape genomics of a critically endangered benthic elasmobranch, the blue skate Dipturus batis	13
Population genomic data in spider mites point to a role for local adaptation in shaping range shifts	13
Diallelic self‐incompatibility is the main determinant of fertilization patterns in olive orchards	13
Host plants and Wolbachia shape the population genetics of sympatric herbivore populations	13
Rapid evolution of knockdown resistance haplotypes in response to pyrethroid selection in Aedes aegypti	13
Ageing European lobsters (Homarus gammarus) using DNA methylation of evolutionarily conserved ribosomal DNA	12
The molecular mechanisms that determine different degrees of polyphagy in the Bemisia tabaci species complex	12
Transcriptional frontloading contributes to cross‐tolerance between stressors	12
Unusual evolution of tree frog populations in the Chernobyl exclusion zone	12

Selection of sites for field trials of genetically engineered mosquitoes with gene drive	12
Rapid adaptation through genomic and epigenomic responses following translocations in an endangered salmonid	12
Using genetic relatedness to understand heterogeneous distributions of urban rat‐associated pathogens	12
Adaptive genetic potential and plasticity of trait variation in the foundation prairie grass Andropogon gerardii across the US Great Plains’ climate gradient: Implications for climate change an	12
Overcoming the growth–infectivity trade‐off in a bacteriophage slows bacterial resistance evolution	12
Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef	12
Selection on fish personality differs between a no‐take marine reserve and fished areas	12
Incipient resistance to an effective pesticide results from genetic adaptation and the canalization of gene expression	12
Marine protected areas rescue a sexually selected trait in European lobster	12
When, why and how tumour clonal diversity predicts survival	12
Comparison of anadromous and landlocked Atlantic salmon genomes reveals signatures of parallel and relaxed selection across the Northern Hemisphere	11
The genome of the Pyrenean desman and the effects of bottlenecks and inbreeding on the genomic landscape of an endangered species	11
Characterization of novel lncRNA muscle expression profiles associated with meat quality in beef cattle	11
Demographic history and genomics of local adaptation in blue tit populations	11
Using historical genome‐wide DNA to unravel the confused taxonomy in a songbird lineage that is extinct in the wild	11
Biological control needs evolutionary perspectives of ecological interactions	11
Genome‐wide analysis reveals the genetic stock structure of hoki (Macruronus novaezelandiae)	11
Transcriptomic divergence between upland and lowland ecotypes contributes to rice adaptation to a drought‐prone agroecosystem	11
Genomics applied to livestock and aquaculture breeding	11
Introduced populations of ragweed show as much evolutionary potential as native populations	11
Natural variation of root lesion nematode antagonism in the biocontrol fungus Clonostachys rosea and identification of biocontrol factors through genome‐wide association mapping	11
Cancer suppression and the evolution of multiple retrogene copies of TP53 in elephants: A re‐evaluation	11
Genomic adaptations to cereal‐based diets contribute to mitigate metabolic risk in some human populations of East Asian ancestry	11
Collagen production and niche engineering: A novel strategy for cancer cells to survive acidosis in DCIS and evolve	11
Ten years of demographic modelling of divergence and speciation in the sea	11
Chromosome‐level reference genome for European flat oyster (Ostrea edulis L.)	11
Do aphids in Dutch sweet pepper greenhouses carry heritable elements that protect them against biocontrol parasitoids?	11
Male frequency in Caenorhabditis elegans increases in response to chronic irradiation	11
Applied phyloepidemiology: Detecting drivers of pathogen transmission from genomic signatures using density measures	11
Genetic differentiation in pesticide resistance between urban and rural populations of a nontarget freshwater keystone interactor, Daphnia magna	11
Chromosomal assembly of the flat oyster (Ostrea edulis L.) genome as a new genetic resource for aquaculture	11
Selection and introgression facilitated the adaptation of Chinese native endangered cattle in extreme environments	11
Projecting introgression from domestic cats into European wildcats in the Swiss Jura	11
Urban rendezvous along the seashore: Ports as Darwinian field labs for studying marine evolution in the Anthropocene	10
Intraspecific variation in landform engineering across a restored salt marsh shoreline	10
Long‐term urbanization impacts the eastern golden frog (Pelophylax plancyi) in Shanghai City: Demographic history, genetic structure, and implications for amphibian conservation in intensively	10
Extent and direction of introgressive hybridization of mule and white‐tailed deer in western Canada	10
Interplay between genetic, epigenetic, and gene expression variability: Considering complexity in evolvability	10
Varying genetic imprints of road networks and human density in North American mammal populations	10
Insect–plant relationships predict the speed of insecticide adaptation	10
Population genomics of free‐ranging Great Plains white‐tailed and mule deer reflects a long history of interspecific hybridization	10
Gene drive escape from resistance depends on mechanism and ecology	10
Are genetic variation and demographic performance linked?	10
Shift in beneficial interactions during crop evolution	10
Genomic and common garden approaches yield complementary results for quantifying environmental drivers of local adaptation in rubber rabbitbrush, a foundational Great Basin shrub	10
Ionizing radiation and melanism in Chornobyl tree frogs	10
Eco‐evolutionary dynamics driven by fishing: From single species models to dynamic evolution within complex food webs	10
Harnessing paleo‐environmental modeling and genetic data to predict intraspecific genetic structure	10
Extent of polymorphism and selection pressure on the Trypanosoma cruzi vaccine candidate antigen Tc24	10
Genomic region associated with run timing has similar haplotypes and phenotypic effects across three lineages of Chinook salmon	10
Population genomics and phylogeography of the boll weevil, Anthonomus grandis Boheman (Coleoptera: Curculionidae), in the United States, northern Mexico, and Argentina	10
Conservation insights from wild bee genetic studies: Geographic differences, susceptibility to inbreeding, and signs of local adaptation	10
Natural CO2 seeps reveal adaptive potential to ocean acidification in fish	9
Invasive freshwater snails form novel microbial relationships	9
Geographic variation in gene flow from a genetically distinct migratory ecotype drives population genetic structure of coastal Atlantic cod (Gadus morhua L.)	9
Host evolutionary relationships explain tree mortality caused by a generalist pest–pathogen complex	9
Genetic architecture, demographic history, and genomic differentiation of Populus davidiana revealed by whole‐genome resequencing	9
An epi‐evolutionary model for predicting the adaptation of spore‐producing pathogens to quantitative resistance in heterogeneous environments	9
Functional genetic diversity of domestic and wild American mink (Neovison vison)	9
Comparative mitogenomics elucidates the population genetic structure of Amblyomma testudinarium in Japan and a closely related Amblyomma species in Myanmar	9
Re‐evaluating Coho salmon (Oncorhynchus kisutch) conservation units in Canada using genomic data	9
Evaluating new species for aquaculture: A genomic dissection of growth in the New Zealand silver trevally (Pseudocaranx georgianus)	9
Importance of interindividual interactions in eco‐evolutionary population dynamics: The rise of demo‐genetic agent‐based models	9
Genomic evidence of recent European introgression into North American farmed and wild Atlantic salmon	9
Hybridization alters growth and migratory life‐history expression of native trout	9
Genome‐wide analysis of hybridization in wild boar populations reveals adaptive introgression from domestic pig	9
Genome‐wide diversity and habitat underlie fine‐scale phenotypic differentiation in the rainbow darter (Etheostoma caeruleum)	9
On the need for integrating cancer into the One Health perspective	9
Surveillance and control of SARS‐CoV‐2 in mustelids: An evolutionary perspective	9
Not that clean: Aquaculture‐mediated translocation of cleaner fish has led to hybridization on the northern edge of the species' range	9
Mytilus trossulus introgression and consequences for shell traits in longline cultivated mussels	8
Using asexual vertebrates to study genome evolution and animal physiology: Banded (Fundulus diaphanus) x Common Killifish (F. heteroclitus) hybrid lineages as a model system	8
Low‐oxygen hormetic conditioning improves field performance of sterile insects by inducing beneficial plasticity	8
Host mixtures for plant disease control: Benefits from pathogen selection and immune priming	8
Multiple evolutionary origins of glyphosate resistance in Lolium multiflorum	8
Evaluating the suitability of close‐kin mark‐recapture as a demographic modelling tool for a critically endangered elasmobranch population	8
The influence of spatially heterogeneous anthropogenic change on bill size evolution in a coastal songbird	8
The genomic basis and environmental correlates of local adaptation in the Atlantic horse mackerel (Trachurus trachurus)	8
Stepwise accumulation of mutations in CesA3 in Phytophthora sojae results in increasing resistance to CAA fungicides	8
How much energetic trade‐offs limit selection? Insights from livestock and related laboratory model species	8
Response to selection for parasitism of a suboptimal, low‐preference host in an aphid parasitoid	8
Quantifying the individual impact of artificial barriers in freshwaters: A standardized and absolute genetic index of fragmentation	8
Genomic vulnerability and socio‐economic threats under climate change in an African rainforest bird	8
A new cheese population in Penicillium roqueforti and adaptation of the five populations to their ecological niche	8
Effective specialist or jack of all trades? Experimental evolution of a crop pest in fluctuating and stable environments	8
Migratory hosts can maintain the high‐dose/refuge effect in a structured host‐parasite system: The case of sea lice and salmon	8
Integrating genetic and nongenetic drivers of somatic evolution during carcinogenesis: The biplane model	8
Hybridization and range expansion in tamarisk beetles (Diorhabda spp.) introduced to North America for classical biological control	7
Testing for population differences in evolutionary responses to pesticide pollution in brown trout (Salmo trutta)	7
Balancing Breeding for Growth and Fecundity in Radiata Pine (Pinus radiata D. Don) Breeding Programme	7
Genome‐scale phylogeography resolves the native population structure of the Asian longhorned beetle, Anoplophora glabripennis (Motschulsky)	7
Assessing the levels of intraspecific admixture and interspecific hybridization in Iberian wild goats (Capra pyrenaica)	7
Phylogenetic diversity and conservation of crop wild relatives in Colombia	7
Cropland connectivity affects genetic divergence of Colorado potato beetle along an invasion front	7
Weaving place‐based knowledge for culturally significant species in the age of genomics: Looking to the past to navigate the future	7