Epidemics

Papers
(The TQCC of Epidemics is 9. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-01-01 to 2026-01-01.)
ArticleCitations
Data pipelines in a public health emergency: The human in the machine101
Seasonality as a driver of pH1N12009 influenza vaccination campaign impact74
Collaborative forecasting of influenza-like illness in Italy: The Influcast experience42
Modelling the COVID-19 pandemic: Focusing on the case of Greece42
A prospective real-time transfer learning approach to estimate influenza hospitalizations with limited data41
Accounting for historical injustices in mathematical models of infectious disease transmission: An analytic overview30
Modeling the population-level impact of treatment on COVID-19 disease and SARS-CoV-2 transmission27
Quantifying individual-level heterogeneity in infectiousness and susceptibility through household studies26
Asymptomatic but infectious – The silent driver of pathogen transmission. A pragmatic review25
Supporting LGBTQ+ epidemiologists in the UK during research-related travel and international collaboration24
A method to estimate the serial interval distribution under partially-sampled data23
Contribution and quality of mathematical modeling evidence in World Health Organization guidelines: A systematic review23
Age-time-specific transmission of hand-foot-and-mouth disease enterovirus serotypes in Vietnam: A catalytic model with maternal immunity22
Education data needs and challenges for building back from COVID-1922
A phenomenological approach to predicting tuberculosis cases with an assessment of measurement errors22
Ensemble 21
Modelling outbreak response impact in human vaccine-preventable diseases: A systematic review of differences in practices between collaboration types before COVID-1921
Mumps epidemic dynamics in the United States before vaccination (1923–1932)20
The impact of household size on measles transmission: A long-term perspective20
Estimating the impact of test–trace–isolate–quarantine systems on SARS-CoV-2 transmission in Australia20
Modelling COVID-19 in the North American region with a metapopulation network and Kalman filter19
Epidemiological characteristics and transmissibility of HPV infection: A long-term retrospective study in Hokkien Golden Triangle, China, 2013–202118
The effective reproductive number: Modeling and prediction with application to the multi-wave Covid-19 pandemic18
Inference for a spatio-temporal model with partial spatial data: African horse sickness virus in Morocco18
The triple epidemics of arboviruses in Feira de Santana, Brazilian Northeast: Epidemiological characteristics and diffusion patterns18
Building in-house capabilities in health agencies and outsourcing to academia or industry: Considerations for effective infectious disease modelling17
Modelling: Understanding pandemics and how to control them17
Mathematical modeling of COVID-19 in British Columbia: An age-structured model with time-dependent contact rates17
A model for reconstructing trends and distribution in age at first sex from multiple household surveys with reporting biases16
Estimating transmission dynamics of SARS-CoV-2 at different intraspatial levels in an institutional outbreak16
A wastewater-based epidemic model for SARS-CoV-2 with application to three Canadian cities16
Serodynamics: A primer and synthetic review of methods for epidemiological inference using serological data15
Wastewater-based surveillance for influenza and respiratory syncytial virus: Insights from a 21-month study in Oklahoma14
First wave of SARS-CoV-2 in Santiago Chile: Seroprevalence, asymptomatic infection and infection fatality rate14
Extending EpiEstim to estimate the transmission advantage of pathogen variants in real-time: SARS-CoV-2 as a case-study14
Ceasing sampling at wastewater treatment plants where viral dynamics are most predictable14
A binary prototype for time-series surveillance and intervention14
Investigating the impact of edge weight selection on the pig trade network topology13
Learning associations of COVID-19 hospitalizations with wastewater viral signals by Markov modulated models13
Estimating COVID-19 cases and deaths prevented by non-pharmaceutical interventions, and the impact of individual actions: A retrospective model-based analysis13
A Cluster-Aggregate-Pool (CAP) ensemble algorithm for improved forecast performance of influenza-like illness13
Sequential Monte Carlo Squared for online inference in stochastic epidemic models13
Public health impact of the U.S. Scenario Modeling Hub13
Optimizing spatial distribution of wastewater-based epidemiology to advance health equity13
Modelling the dynamics of SARS-CoV-2 during the first 14 days of infection13
Projecting the population-level impact of norovirus vaccines13
Complex model calibration through emulation, a worked example for a stochastic epidemic model13
The effects of HIV self-testing on HIV incidence and awareness of status among men who have sex with men in the United States: Insights from a novel compartmental model13
Demonstrating multi-country calibration of a tuberculosis model using new history matching and emulation package - hmer12
Preface of the African swine fever modelling challenge special issue12
Variation in pneumococcal invasiveness metrics is driven by serotype carriage duration and initial risk of disease12
RAMPVIS: Answering the challenges of building visualisation capabilities for large-scale emergency responses12
A simulation-based approach for estimating the time-dependent reproduction number from temporally aggregated disease incidence time series data12
Retrospective modelling of the disease and mortality burden of the 1918–1920 influenza pandemic in Zurich, Switzerland12
Outbreak reconstruction with a slowly evolving multi-host pathogen: A comparative study of three existing methods on Mycobacterium bovis outbreaks12
Verifying infectious disease scenario planning for geographically diverse populations11
Considering waning immunity to better explain dengue dynamics11
SARS-CoV-2 transmission patterns in educational settings during the Alpha wave in Reggio-Emilia, Italy11
Modelling lymphatic filariasis elimination in American Samoa: GEOFIL predicts need for new targets and six rounds of mass drug administration11
Agent-based modeling of the COVID-19 pandemic in Florida11
Advancing genomic epidemiology by addressing the bioinformatics bottleneck: Challenges, design principles, and a Swiss example11
Appropriately smoothing prevalence data to inform estimates of growth rate and reproduction number10
Machine learning approaches for real-time ZIP code and county-level estimation of state-wide infectious disease hospitalizations using local health system data10
Estimating measures to reduce the transmission of SARS-CoV-2 in Australia to guide a ‘National Plan’ to reopening10
Applying mixture model methods to SARS-CoV-2 serosurvey data from Geneva10
Bayesian monitoring of COVID-19 in Sweden10
A country-specific model of COVID-19 vaccination coverage needed for herd immunity in adult only or population wide vaccination programme10
Wastewater-based epidemiology for COVID-19 surveillance and beyond: A survey10
Impact of vaccination and non-pharmaceutical interventions on SARS-CoV-2 dynamics in Switzerland10
The risk of SARS-CoV-2 Omicron variant emergence in low and middle-income countries (LMICs)10
Does spatial information improve forecasting of influenza-like illness?9
Reconstructing the first COVID-19 pandemic wave with minimal data in England9
In the shadow of privacy: Overlooked ethical concerns in COVID-19 digital epidemiology9
Explaining the stable coexistence of drug-resistant and -susceptible pathogens: the resistance acquisition purifying selection model9
Coughs, colds and “freshers’ flu” survey in the University of Cambridge, 2007–20089
Estimating age-stratified transmission and reproduction numbers during the early exponential phase of an epidemic: A case study with COVID-19 data9
Lives saved by public health restrictions over the Victorian COVID-19 Delta variant epidemic wave, Aug-Nov 20219
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