Epidemics

Papers
(The TQCC of Epidemics is 10. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-09-01 to 2025-09-01.)
ArticleCitations
Accounting for historical injustices in mathematical models of infectious disease transmission: An analytic overview182
Data pipelines in a public health emergency: The human in the machine94
Seasonality as a driver of pH1N12009 influenza vaccination campaign impact67
Modelling the COVID-19 pandemic: Focusing on the case of Greece66
Collaborative forecasting of influenza-like illness in Italy: The Influcast experience41
A prospective real-time transfer learning approach to estimate influenza hospitalizations with limited data39
Quantifying individual-level heterogeneity in infectiousness and susceptibility through household studies37
Modeling the population-level impact of treatment on COVID-19 disease and SARS-CoV-2 transmission35
Asymptomatic but infectious – The silent driver of pathogen transmission. A pragmatic review34
Age-time-specific transmission of hand-foot-and-mouth disease enterovirus serotypes in Vietnam: A catalytic model with maternal immunity29
Contribution and quality of mathematical modeling evidence in World Health Organization guidelines: A systematic review29
Realtime case study simulations of transmission of Pancreas Disease (PD) in Norwegian salmonid farming for disease control purposes25
A method to estimate the serial interval distribution under partially-sampled data25
A phenomenological approach to predicting tuberculosis cases with an assessment of measurement errors23
The effective reproductive number: Modeling and prediction with application to the multi-wave Covid-19 pandemic23
Inference for a spatio-temporal model with partial spatial data: African horse sickness virus in Morocco22
The triple epidemics of arboviruses in Feira de Santana, Brazilian Northeast: Epidemiological characteristics and diffusion patterns21
Modelling COVID-19 in the North American region with a metapopulation network and Kalman filter21
The impact of household size on measles transmission: A long-term perspective21
Modelling: Understanding pandemics and how to control them21
Education data needs and challenges for building back from COVID-1921
Estimating the impact of test–trace–isolate–quarantine systems on SARS-CoV-2 transmission in Australia20
Mumps epidemic dynamics in the United States before vaccination (1923–1932)20
Mathematical modeling of COVID-19 in British Columbia: An age-structured model with time-dependent contact rates20
Modelling outbreak response impact in human vaccine-preventable diseases: A systematic review of differences in practices between collaboration types before COVID-1920
Ensemble2: Scen20
Epidemiological characteristics and transmissibility of HPV infection: A long-term retrospective study in Hokkien Golden Triangle, China, 2013–202120
Building in-house capabilities in health agencies and outsourcing to academia or industry: Considerations for effective infectious disease modelling19
A model for reconstructing trends and distribution in age at first sex from multiple household surveys with reporting biases19
Extending EpiEstim to estimate the transmission advantage of pathogen variants in real-time: SARS-CoV-2 as a case-study19
Modelling SARS-CoV-2 transmission in a UK university setting19
Understanding MRSA clonal competition within a UK hospital; the possible importance of density dependence19
Serodynamics: A primer and synthetic review of methods for epidemiological inference using serological data18
Ceasing sampling at wastewater treatment plants where viral dynamics are most predictable18
Estimating transmission dynamics of SARS-CoV-2 at different intraspatial levels in an institutional outbreak18
Coordinated support for local action: Modeling strategies to facilitate behavior adoption in urban-poor communities of Liberia for sustained COVID-19 suppression18
A wastewater-based epidemic model for SARS-CoV-2 with application to three Canadian cities18
First wave of SARS-CoV-2 in Santiago Chile: Seroprevalence, asymptomatic infection and infection fatality rate18
Modelling the dynamics of SARS-CoV-2 during the first 14 days of infection17
Estimating COVID-19 cases and deaths prevented by non-pharmaceutical interventions, and the impact of individual actions: A retrospective model-based analysis17
The effects of HIV self-testing on HIV incidence and awareness of status among men who have sex with men in the United States: Insights from a novel compartmental model17
A Cluster-Aggregate-Pool (CAP) ensemble algorithm for improved forecast performance of influenza-like illness16
Optimizing spatial distribution of wastewater-based epidemiology to advance health equity16
Complex model calibration through emulation, a worked example for a stochastic epidemic model15
Variation in pneumococcal invasiveness metrics is driven by serotype carriage duration and initial risk of disease15
Social contact patterns among employees in 3 U.S. companies during early phases of the COVID-19 pandemic, April to June 202015
Dynamic network strategies for SARS-CoV-2 control on a cruise ship14
Learning associations of COVID-19 hospitalizations with wastewater viral signals by Markov modulated models14
Demonstrating multi-country calibration of a tuberculosis model using new history matching and emulation package - hmer14
Public health impact of the U.S. Scenario Modeling Hub13
Retrospective modelling of the disease and mortality burden of the 1918–1920 influenza pandemic in Zurich, Switzerland13
Investigating the impact of edge weight selection on the pig trade network topology13
Sequential Monte Carlo Squared for online inference in stochastic epidemic models13
A simulation-based approach for estimating the time-dependent reproduction number from temporally aggregated disease incidence time series data13
Projecting the population-level impact of norovirus vaccines13
Modelling lymphatic filariasis elimination in American Samoa: GEOFIL predicts need for new targets and six rounds of mass drug administration12
RAMPVIS: Answering the challenges of building visualisation capabilities for large-scale emergency responses12
Considering waning immunity to better explain dengue dynamics12
Machine learning approaches for real-time ZIP code and county-level estimation of state-wide infectious disease hospitalizations using local health system data12
Preface of the African swine fever modelling challenge special issue12
Advancing genomic epidemiology by addressing the bioinformatics bottleneck: Challenges, design principles, and a Swiss example12
Agent-based modeling of the COVID-19 pandemic in Florida12
Outbreak reconstruction with a slowly evolving multi-host pathogen: A comparative study of three existing methods on Mycobacterium bovis outbreaks12
SARS-CoV-2 transmission patterns in educational settings during the Alpha wave in Reggio-Emilia, Italy12
Effective strategies to promote HIV self-testing for men who have sex with men: Evidence from a mathematical model12
A quantitative assessment of epidemiological parameters required to investigate COVID-19 burden11
Appropriately smoothing prevalence data to inform estimates of growth rate and reproduction number11
Wastewater-based epidemiology for COVID-19 surveillance and beyond: A survey11
Verifying infectious disease scenario planning for geographically diverse populations11
The risk of SARS-CoV-2 Omicron variant emergence in low and middle-income countries (LMICs)11
Impact of vaccination and non-pharmaceutical interventions on SARS-CoV-2 dynamics in Switzerland11
Bayesian monitoring of COVID-19 in Sweden11
A country-specific model of COVID-19 vaccination coverage needed for herd immunity in adult only or population wide vaccination programme11
Applying mixture model methods to SARS-CoV-2 serosurvey data from Geneva11
Estimating measures to reduce the transmission of SARS-CoV-2 in Australia to guide a ‘National Plan’ to reopening11
Lives saved by public health restrictions over the Victorian COVID-19 Delta variant epidemic wave, Aug-Nov 202110
Modeling the transmission of antibiotic-resistant Enterobacterales in the community: A systematic review10
Transmission dynamics of an antimicrobial resistant Campylobacter jejuni lineage in New Zealand’s commercial poultry network10
Does spatial information improve forecasting of influenza-like illness?10
Coughs, colds and “freshers’ flu” survey in the University of Cambridge, 2007–200810
Estimating age-stratified transmission and reproduction numbers during the early exponential phase of an epidemic: A case study with COVID-19 data10
Assessing the risk of cascading COVID-19 outbreaks from prison-to-prison transfers10
Using video-analysis technology to estimate social mixing and simulate influenza transmission at a mass gathering10
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