Epigenetics & Chromatin

Papers
(The TQCC of Epigenetics & Chromatin is 12. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-05-01 to 2024-05-01.)
ArticleCitations
Losing DNA methylation at repetitive elements and breaking bad65
Efficient and accurate determination of genome-wide DNA methylation patterns in Arabidopsis thaliana with enzymatic methyl sequencing62
The solid and liquid states of chromatin57
Integration of sperm ncRNA-directed DNA methylation and DNA methylation-directed histone retention in epigenetic transgenerational inheritance43
Post-translational modifications of PRC2: signals directing its activity39
Histone N-alpha terminal modifications: genome regulation at the tip of the tail36
Histone crotonylation-centric gene regulation35
Evaluation of whole-genome DNA methylation sequencing library preparation protocols30
Histone modifications associated with gene expression and genome accessibility are dynamically enriched at Plasmodium falciparum regulatory sequences28
HISTome2: a database of histone proteins, modifiers for multiple organisms and epidrugs28
Comparison of methylation capture sequencing and Infinium MethylationEPIC array in peripheral blood mononuclear cells27
Hypoxic in vitro culture reduces histone lactylation and impairs pre-implantation embryonic development in mice26
Epigenetic regulation of retinal development24
Distinct and overlapping roles of STAG1 and STAG2 in cohesin localization and gene expression in embryonic stem cells24
Mechanism and functional role of the interaction between CP190 and the architectural protein Pita in Drosophila melanogaster24
Chromosome structural variation in tumorigenesis: mechanisms of formation and carcinogenesis23
Cross-species examination of X-chromosome inactivation highlights domains of escape from silencing23
Dynamics of cattle sperm sncRNAs during maturation, from testis to ejaculated sperm22
Structural and functional specificity of H3K36 methylation20
Impact of 3D genome organization, guided by cohesin and CTCF looping, on sex-biased chromatin interactions and gene expression in mouse liver19
Regulation of SETD2 stability is important for the fidelity of H3K36me3 deposition19
ΔNp63 is a pioneer factor that binds inaccessible chromatin and elicits chromatin remodeling19
Chromatin accessibility maps provide evidence of multilineage gene priming in hematopoietic stem cells19
A standardized nomenclature for mammalian histone genes19
Viral histones: pickpocket’s prize or primordial progenitor?18
DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna18
The DNMT1 inhibitor GSK-3484862 mediates global demethylation in murine embryonic stem cells17
Functions of HP1 proteins in transcriptional regulation17
Characterization of universal features of partially methylated domains across tissues and species17
Loss of EZH2-like or SU(VAR)3–9-like proteins causes simultaneous perturbations in H3K27 and H3K9 tri-methylation and associated developmental defects in the fungus Podospora anserina17
Sequencing of methylase-accessible regions in integral circular extrachromosomal DNA reveals differences in chromatin structure16
Genome-wide impact of hydrogen peroxide on maintenance DNA methylation in replicating cells16
Evolutionary adaptation of the Polycomb repressive complex 216
Sperm DNA methylation alterations from cannabis extract exposure are evident in offspring16
Making sense of the linear genome, gene function and TADs16
GBAF, a small BAF sub-complex with big implications: a systematic review15
A cookbook for DNase Hi-C15
Pioneer transcription factors are associated with the modulation of DNA methylation patterns across cancers14
Interplay of pericentromeric genome organization and chromatin landscape regulates the expression of Drosophila melanogaster heterochromatic genes14
Conservation and diversity of the eukaryotic SAGA coactivator complex across kingdoms14
DAMEfinder: a method to detect differential allele-specific methylation14
The fibronectin type-III (FNIII) domain of ATF7IP contributes to efficient transcriptional silencing mediated by the SETDB1 complex14
The social construction of the social epigenome and the larger biological context13
Effects of paternal exposure to cigarette smoke on sperm DNA methylation and long-term metabolic syndrome in offspring13
Multiple distinct domains of human XIST are required to coordinate gene silencing and subsequent heterochromatin formation12
Molecular mechanism of histone variant H2A.B on stability and assembly of nucleosome and chromatin structures12
Contribution of genetic and epigenetic changes to escape from X-chromosome inactivation12
In vivo chromatin organization on native yeast telomeric regions is independent of a cis-telomere loopback conformation12
Stable DNMT3L overexpression in SH-SY5Y neurons recreates a facet of the genome-wide Down syndrome DNA methylation signature12
The zinc finger protein CLAMP promotes long-range chromatin interactions that mediate dosage compensation of the Drosophila male X-chromosome12
Ageing-associated changes in DNA methylation in X and Y chromosomes12
Changes in chromatin accessibility landscape and histone H3 core acetylation during valproic acid-induced differentiation of embryonic stem cells12
N6-Adenosine methylation on mRNA is recognized by YTH2 domain protein of human malaria parasite Plasmodium falciparum12
Chromatin alterations during the epididymal maturation of mouse sperm refine the paternally inherited epigenome12
The histone and non-histone methyllysine reader activities of the UHRF1 tandem Tudor domain are dispensable for the propagation of aberrant DNA methylation patterning in cancer cells12
DNA methylation suppresses chitin degradation and promotes the wing development by inhibiting Bmara-mediated chitinase expression in the silkworm, Bombyx mori12
Epigenomic landscape of enhancer elements during Hydra head organizer formation12
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