Epigenetics & Chromatin

Papers
(The TQCC of Epigenetics & Chromatin is 11. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-06-01 to 2025-06-01.)
ArticleCitations
Changes in DNA methylation hallmark alterations in chromatin accessibility and gene expression for eye lens differentiation103
The role of genetic diversity, epigenetic regulation, and sex-based differences in HIV cure research: a comprehensive review93
An optimized approach for multiplexing single-nuclear ATAC-seq using oligonucleotide-conjugated antibodies55
Co-effects of m6A and chromatin accessibility dynamics in the regulation of cardiomyocyte differentiation49
Multilevel interrogation of H3.3 reveals a primordial role in transcription regulation47
From compartments to loops: understanding the unique chromatin organization in neuronal cells45
Chromatin structure and 3D architecture define the differential functions of PU.1 regulatory elements in blood cell lineages40
Evolutionary adaptation of the Polycomb repressive complex 231
Mouse Chd4-NURD is required for neonatal spermatogonia survival and normal gonad development30
Partial erosion on under-methylated regions and chromatin reprogramming contribute to oncogene activation in IDH mutant gliomas28
Conservation and diversity of the eukaryotic SAGA coactivator complex across kingdoms27
Who’s afraid of the X? Incorporating the X and Y chromosomes into the analysis of DNA methylation array data25
Acetylation modification of AIM2 by KAT2B suppresses the AKT/Wnt/β-catenin signaling pathway activation and inhibits breast cancer progression25
Sensitivity of cohesin–chromatin association to high-salt treatment corroborates non-topological mode of loop extrusion24
One-pot universal NicE-seq: all enzymatic downstream processing of 4% formaldehyde crosslinked cells for chromatin accessibility genomics24
Development of super-specific epigenome editing by targeted allele-specific DNA methylation23
Intrafamily heterooligomerization as an emerging mechanism of methyltransferase regulation23
Chromatin balances cell redox and energy homeostasis21
Phthalates impact on the epigenetic factors contributed specifically by the father at fertilization20
Heterosis of growth trait regulated by DNA methylation and miRNA in allotriploid fish20
Evaluation of whole-genome DNA methylation sequencing library preparation protocols20
Roles of post-translational modifications of UHRF1 in cancer20
Analysis of long-range chromatin contacts, compartments and looping between mouse embryonic stem cells, lens epithelium and lens fibers18
Acquired sperm hypomethylation by gestational arsenic exposure is re-established in both the paternal and maternal genomes of post-epigenetic reprogramming embryos17
CpG DNA methylation changes during epididymal sperm maturation in bulls17
Losing DNA methylation at repetitive elements and breaking bad16
Native and tagged CENP-A histones are functionally inequivalent16
Manipulating chromatin architecture in C. elegans16
H3K27me3 and the PRC1-H2AK119ub pathway cooperatively maintain heterochromatin and transcriptional silencing after the loss of H3K9 methylation15
The methylome of Biomphalaria glabrata and other mollusks: enduring modification of epigenetic landscape and phenotypic traits by a new DNA methylation inhibitor15
TP63–TRIM29 axis regulates enhancer methylation and chromosomal instability in prostate cancer14
PDS5A and PDS5B differentially affect gene expression without altering cohesin localization across the genome14
Impact of chromatin on HIV-1 latency: a multi-dimensional perspective14
Mitochondrial supplementation of Sus scrofa metaphase II oocytes alters DNA methylation and gene expression profiles of blastocysts13
The WAC-downWAC domain in the yeast ISW2 nucleosome remodeling complex forms a structural module essential for ISW2 function but not cell viability13
Mechanism of non-coding RNA regulation of DNMT3A13
Maternal SMCHD1 controls both imprinted Xist expression and imprinted X chromosome inactivation13
Multi-omics analyses of MEN1 missense mutations identify disruption of menin–MLL and menin–JunD interactions as critical requirements for molecular pathogenicity12
Structural and functional specificity of H3K36 methylation12
Reinforcement of repressive marks in the chicken primordial germ cell epigenetic signature: divergence from basal state resetting in mammals12
Epigenetic control of dental stem cells: progress and prospects in multidirectional differentiation12
TET-mediated DNA hydroxymethylation is negatively influenced by the PARP-dependent PARylation12
Knockout tales: the versatile roles of histone H3.3 in development and disease12
Investigation of reversible histone acetylation and dynamics in gene expression regulation using 3D liver spheroid model11
Prenatal nicotine exposure leads to epigenetic alterations in peripheral nervous system signaling genes in the testis of the rat11
Effects of paternal exposure to cigarette smoke on sperm DNA methylation and long-term metabolic syndrome in offspring11
Histone H3.3 K27M chromatin functions implicate a network of neurodevelopmental factors including ASCL1 and NEUROD1 in DIPG11
Making sense of the linear genome, gene function and TADs11
Premature ovarian insufficiency is associated with global alterations in the regulatory landscape and gene expression in balanced X-autosome translocations11
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