Epigenetics & Chromatin

Papers
(The TQCC of Epigenetics & Chromatin is 10. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-05-01 to 2025-05-01.)
ArticleCitations
The role of genetic diversity, epigenetic regulation, and sex-based differences in HIV cure research: a comprehensive review97
Changes in DNA methylation hallmark alterations in chromatin accessibility and gene expression for eye lens differentiation89
Loss of EZH2-like or SU(VAR)3–9-like proteins causes simultaneous perturbations in H3K27 and H3K9 tri-methylation and associated developmental defects in the fungus Podospora anserina53
An optimized approach for multiplexing single-nuclear ATAC-seq using oligonucleotide-conjugated antibodies46
Co-effects of m6A and chromatin accessibility dynamics in the regulation of cardiomyocyte differentiation44
Multilevel interrogation of H3.3 reveals a primordial role in transcription regulation44
From compartments to loops: understanding the unique chromatin organization in neuronal cells38
Mouse Chd4-NURD is required for neonatal spermatogonia survival and normal gonad development30
Chromatin structure and 3D architecture define the differential functions of PU.1 regulatory elements in blood cell lineages29
Evolutionary adaptation of the Polycomb repressive complex 228
Partial erosion on under-methylated regions and chromatin reprogramming contribute to oncogene activation in IDH mutant gliomas26
Sensitivity of cohesin–chromatin association to high-salt treatment corroborates non-topological mode of loop extrusion26
Conservation and diversity of the eukaryotic SAGA coactivator complex across kingdoms25
Intrafamily heterooligomerization as an emerging mechanism of methyltransferase regulation24
Who’s afraid of the X? Incorporating the X and Y chromosomes into the analysis of DNA methylation array data24
One-pot universal NicE-seq: all enzymatic downstream processing of 4% formaldehyde crosslinked cells for chromatin accessibility genomics24
Development of super-specific epigenome editing by targeted allele-specific DNA methylation23
Evaluation of whole-genome DNA methylation sequencing library preparation protocols23
Chromatin balances cell redox and energy homeostasis22
CpG DNA methylation changes during epididymal sperm maturation in bulls21
Phthalates impact on the epigenetic factors contributed specifically by the father at fertilization20
Analysis of long-range chromatin contacts, compartments and looping between mouse embryonic stem cells, lens epithelium and lens fibers19
Roles of post-translational modifications of UHRF1 in cancer19
Acquired sperm hypomethylation by gestational arsenic exposure is re-established in both the paternal and maternal genomes of post-epigenetic reprogramming embryos18
Losing DNA methylation at repetitive elements and breaking bad17
Manipulating chromatin architecture in C. elegans16
Heterosis of growth trait regulated by DNA methylation and miRNA in allotriploid fish16
TP63–TRIM29 axis regulates enhancer methylation and chromosomal instability in prostate cancer16
Impact of chromatin on HIV-1 latency: a multi-dimensional perspective15
PDS5A and PDS5B differentially affect gene expression without altering cohesin localization across the genome15
The methylome of Biomphalaria glabrata and other mollusks: enduring modification of epigenetic landscape and phenotypic traits by a new DNA methylation inhibitor15
Maternal SMCHD1 controls both imprinted Xist expression and imprinted X chromosome inactivation14
Epigenetic control of dental stem cells: progress and prospects in multidirectional differentiation14
Mitochondrial supplementation of Sus scrofa metaphase II oocytes alters DNA methylation and gene expression profiles of blastocysts14
Native and tagged CENP-A histones are functionally inequivalent14
Structural and functional specificity of H3K36 methylation13
Knockout tales: the versatile roles of histone H3.3 in development and disease13
Investigation of reversible histone acetylation and dynamics in gene expression regulation using 3D liver spheroid model12
Effects of paternal exposure to cigarette smoke on sperm DNA methylation and long-term metabolic syndrome in offspring12
Multi-omics analyses of MEN1 missense mutations identify disruption of menin–MLL and menin–JunD interactions as critical requirements for molecular pathogenicity12
Reinforcement of repressive marks in the chicken primordial germ cell epigenetic signature: divergence from basal state resetting in mammals12
Mechanism of non-coding RNA regulation of DNMT3A12
TET-mediated DNA hydroxymethylation is negatively influenced by the PARP-dependent PARylation12
Making sense of the linear genome, gene function and TADs12
Premature ovarian insufficiency is associated with global alterations in the regulatory landscape and gene expression in balanced X-autosome translocations11
Genome-wide DNA methylation patterns in Daphnia magna are not significantly associated with age11
Prenatal nicotine exposure leads to epigenetic alterations in peripheral nervous system signaling genes in the testis of the rat11
Histone H3.3 K27M chromatin functions implicate a network of neurodevelopmental factors including ASCL1 and NEUROD1 in DIPG11
Pioneer transcription factors are associated with the modulation of DNA methylation patterns across cancers10
Var∣Decrypt: a novel and user-friendly tool to explore and prioritize variants in whole-exome sequencing data10
Drosophila architectural proteins M1BP and Opbp cooperatively form the active promoter of a ribosomal protein gene10
Risk-focused differences in molecular processes implicated in SARS-CoV-2 infection: corollaries in DNA methylation and gene expression10
Hypoxic in vitro culture reduces histone lactylation and impairs pre-implantation embryonic development in mice10
Differential enrichment of H3K9me3 at annotated satellite DNA repeats in human cell lines and during fetal development in mouse10
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