Gut Pathogens

Article	Citations
Comprehensive evaluation and progress of colorectal cancer screening methods	157
A monoclonal antibody collection for C. difficile typing ?	107
Invasion of intestinal cells by Staphylococcus warneri, a member of the human gut microbiota	58
Equol: a metabolite of gut microbiota with potential antitumor effects	50
Novel indole-based sulfonate and sulfamate derivatives as potent and selective urease inhibitors targeting Helicobacter pylori: a promising therapeutic strategy	47
Systemic IgG responses to glycosylated mucinase YghJ after experimental enterotoxigenic Escherichia coli infection	46
The emerging role of neutrophilic extracellular traps in intestinal disease	45
Stunting is associated with persistent and transferable alterations in the gut microbiome	43
Significant abundance of bacterial flagellin and expression of its surface localized receptor toll-like receptor 5 and cytokine interleukin-22 in South African infants with poor oral rotavirus vaccine	41
A fatal case of Vibrio cholerae-associated diarrhea and bacteremia in a 30-year-old carrier of beta-thalassemia	39
A case–control study of the association between the gut microbiota and colorectal cancer: exploring the roles of diet, stress, and race	37
Enhanced pathogen detection and gut microbiome alterations in pyogenic liver abscess: insights from next-generation sequencing	37
Analysis of antimicrobial resistance patterns and genetic mutations in Helicobacter pylori from West Bengal, India depicting escalating clarithromycin and high levofloxacin resistance	36
Clonal and horizontal transmission of carbapenem-resistant Enterobacterales strains and genes via flies	35
Characteristics of ESBL-positive Klebsiella pneumoniae isolated from paired children with and without diarrhea	33
Dietary patterns drive loss of fiber-foraging species in the celiac disease patients gut microbiota compared to first-degree relatives	33
Intestinal metabolites predict treatment resistance of patients with depression and anxiety	29
Profile of intestinal fungal microbiota in acute pancreatitis patients and healthy individuals	28
Tropical sprue: a narrative review of a neglected malabsorption syndrome	24
Elucidating antibiofilm as well as photocatalytic disinfection potential of green synthesized nanosilver against multi-drug-resistant bacteria and its photodegradation ability of cationic dyes	23
The role of non-Helicobacter pylori bacteria in the pathogenesis of gastroduodenal diseases	20
Sodium butyrate augments the antibacterial activity of tetracycline against clinical isolates of multidrug-resistant Vibrio cholerae	20
Patients with inflammatory bowel disease exhibit increased susceptibility to HCoV-NL63	19
Correction: Diversity and composition of gut microbiota in healthy individuals and patients at different stages of hepatitis B virus-related liver disease	19
Shigella flexneri and Shigella sonnei among children under five in Kenya’s urban informal settlement	18

Tripartite interplay: immune reconstitution dynamics in AIDS, gut microbiota, and Helicobacter pylori infection: current advances and therapeutic prospects	18
Fusobacterium nucleatum and non-coding RNAs: orchestrating oncogenic pathways in colorectal cancer	18
Risk stratification of spontaneous bacterial peritonitis recurrence: integrating acute kidney injury, biomarkers, composite scores, and machine learning models	18
Fecal microbiome alterations of mice following immunization with gold nanoparticle vaccines against enterohemorrhagic Escherichia coli	17
Pathogenetic detection, retrospective and pathogenicity analysis of a fatal case of Vibrio vulnificus in Shenzhen, China	17
Gut microbiota alterations and their association with tumorigenic pathways in colorectal cancer: insights from a pooled analysis of 109 microbiome datasets	17
Impact of invasive infections on clinical outcomes in acute pancreatitis: early predictive factors and implications for prophylactic anti-infective therapy	17
Gut microbiome changes in people with diabetic retinopathy in India. DRMS-India report # 1: operational protocol and trends from first 100 participants	16
A systematic review and meta-analysis of protozoan parasite infections among patients with mental health disorders: an overlooked phenomenon	16
Fecal glycoprotein 2 is a marker of gut microbiota dysbiosis and systemic inflammation	15
Genomes of Vibrio metoecus co-isolated with Vibrio cholerae extend our understanding of differences between these closely related species	14
Assessing whether rectal swabs reflect appendiceal microbiota profiles in acute appendicitis: a 16S rRNA-based comparative study	14
Helicobacter pylori infection: is there circulating vacuolating cytotoxin A or cytotoxin-associated gene A protein?	14
Epidemiological, clinical, and molecular characteristics of coxsackievirus A2 infections during a herpangina outbreak in children on an Island in Eastern China in 2024: a surveillance-based study	14
Potential impact of gut Lactobacillus acidophilus and Bifidobacterium bifidum on hepatic histopathological changes in non-cirrhotic hepatitis C virus patients with different viral load	13
Risk factors and clinical outcomes associated with multiple as opposed to single pathogens detected on the gastrointestinal disease polymerase chain reaction assay	13
Contrasting the gut microbiome in Colombian patients with diarrhea: a comparative metagenomic study in hospitalization and emergency room services	13
Prevalence of intestinal parasites and Helicobacter pylori coinfection, and contributing factors among patients with gastrointestinal manifestations at Addis Zemen primary hospital, Northwest Ethiopia	13
Recent five-year progress in the impact of gut microbiota on vaccination and possible mechanisms	13
Antimicrobial growth promoters approved in food-producing animals in South Africa induce shiga toxin-converting bacteriophages from Escherichia coli O157:H7.	13
Tissue-specific transcriptomic adaptation in three strains of chickens during coinfections with parasites	13
Gram-negative gut colonization in children newly diagnosed with malignancy: microbiology, antimicrobial resistance pattern, and clinical implications	12
High resolution melting real-time PCR for genotyping of Giardia lamblia assemblages A and B regardless of parasite load	12
Overview of pathogenic Escherichia coli, with a focus on Shiga toxin-producing serotypes, global outbreaks (1982–2024) and food safety criteria	12
Management of dyspepsia and Helicobacter pylori infection: the 2022 Indonesian Consensus Report	12
Cross-country multi-modal evidence links Aspergillus to biliary atresia	12
16S rRNA sequencing analysis of the oral and fecal microbiota in colorectal cancer positives versus colorectal cancer negatives in Iranian population	12
Dysbiosis of gut microbiota during fecal stream diversion in patients with colorectal cancer	12
Modulatory role of Akkermansia muciniphila in cancer pathophysiology: a systematic review and meta-analysis of preclinical studies	12
Metagenomics: a new frontier for routine pathology testing of gastrointestinal pathogens	11
A triad of gut dysbiosis, dysregulated immunity, and ‘leaky’ gut characterize HCMV associated neonatal cholestasis	11
Machine learning approach and internet of things technologies to unravel the complex interaction between microbiome-metabolome in inflammatory bowel disease: a new frontier in precision medicine	11
Determinants of Campylobacter species diversity in infants and association with family members, livestock, and household environments in rural Eastern Ethiopia	11
Survival implications of the age-associated tumor and normal adjacent tissue microbiome among colorectal cancer patients	11
Salmonella prevalence and serovar distribution in reptiles: a systematic review and meta-analysis	10
Etiology of diarrheal hospitalizations following rotavirus vaccine implementation and association of enteric pathogens with malnutrition among under-five children in India	10
The effects of probiotic treatment with Bifidobacterium breve, Bif195 for small intestinal Crohn’s disease and the gut microbiome: results from a randomised, double-blind, placebo-controlled trial	10
Comparison of antimicrobial resistant Escherichia coli isolated from Irish commercial pig farms with and without zinc oxide and antimicrobial usage	10
Bacteroides- and Prevotella-enriched gut microbial clusters associate with metabolic risks	10
Comparative genomics of Campylobacter jejuni from clinical campylobacteriosis stool specimens	10
Genomic insights into zoonotic transmission and antimicrobial resistance in Campylobacter jejuni from farm to fork: a one health perspective	10
Nasopharyngeal viral infection as a source of elevated fecal calprotectin: a diagnostic pitfall in intestinal inflammation	10
Gut microbiome-based strategies for HIV prevention and therapy, current challenges and future prospects	10
Brevilin A reverses colitis of inflammatory bowel disease via modulation of TNF-α signaling and microbiome dysregulation	10
Bacteremia from streptococcus constellatus revealing a gastrointestinal stromal tumor	10
Targeting autophagy and programmed cell death in neurological diseases via probiotic intervention	10
The immune-adjunctive potential of recombinant LAB vector expressing murine IFNλ3 (MuIFNλ3) against Type A Influenza Virus (IAV) infection	10
Correction: Recent five-year progress in the impact of gut microbiota on vaccination and possible mechanisms	9
Gut microbiota signatures and predictive model of KPS in advanced colorectal cancer patients	9
Effect of probiotic supplementation on gastrointestinal motility, inflammation, motor, non-motor symptoms and mental health in Parkinson’s disease: a meta-analysis of randomized controlled trials	9

Timing and clinical risk factors for early acquisition of gut pathogen colonization with multidrug resistant organisms in the intensive care unit	9
High-dose dual therapy for Helicobacter pylori eradication inducing less impact on the gut microbiota	9
Genetic evolution and phylogenetic analysis of porcine epidemic diarrhea virus strains circulating in and outside China with reference to a wild type virulent genotype CHYJ130330 reported from Guangdo	9
Gut microbiota and intestinal polyps: a systematic review and meta-analysis based on 16S rRNA gene sequencing	9
Dynamic changes in the gut microbiota composition during adalimumab therapy in patients with ulcerative colitis: implications for treatment response prediction and therapeutic targets	9
The association between Helicobacter pylori and osteoporosis: the mediating effect of inflammation	9
miR-125a-5p regulates the sialyltransferase ST3GAL1 in murine model of human intestinal campylobacteriosis	8
Depletion of core microbiome forms the shared background against diverging dysbiosis patterns in Crohn’s disease and intestinal tuberculosis: insights from an integrated multi-cohort analysis	8
Correlation between gut microbiota composition, enteric infections and linear growth impairment: a case–control study in childhood stunting in Pidie, Aceh, Indonesia	8
Correction: Molecular characterization and risk analysis of Giardia duodenalis assemblages in corticosteroid-treated and non-treated patients in Ismailia, Arab Republic of Egypt	8
Role of fecal calprotectin as a hypoxic intestinal damage biomarker in COVID-19 patients	8
Gut microbiota profile in newly diagnosed pulmonary tuberculosis patients: an exploratory pilot study in southern India	8
Elevated plasma and bile levels of corisin, a microbiota-derived proapoptotic peptide, in patients with severe acute cholangitis	8
Genotyping and molecular profiling of intestinal microsporidiosis and cryptosporidiosis in HIV-infected patients in Alborz Province, Iran	8
The gut microbiome, resistome, and mycobiome in preterm newborn infants and mouse pups: lack of lasting effects by antimicrobial therapy or probiotic prophylaxis	8
Lactococcus cremoris decreases virulence‑associated properties, and modifies the protein profile of foodborne pathogen Campylobacter jejuni in biofilm	8
Clostridioides difficile toxin is infrequently detected in inflammatory bowel disease and does not associate with clinical outcomes	8
Profiling of the tumor-associated microbiome in patients with hepatocellular carcinoma	8
Helicobacter pylori infection is associated with an increased risk of chronic obstructive pulmonary disease and asthma	8
Development of the gut microbiota during early life in premature and term infants	8
Urinary markers of Mycobacterium tuberculosis and dysbiosis in paediatric tuberculous meningitis cases undergoing treatment	7
Linking gut microbiome to HIV-1 reservoir size in people living with HIV	7
Associations between gut microbiome and circulating cytokines: a cross-sectional analysis in the FINRISK 2002 population cohort	7
Gastrointestinal parasitic infections: Prevalence and risk factors in West Ismailia, Arab Republic of Egypt	7
Effect of proton pump inhibitors in infants with esophageal atresia on the gut microbiome: a pilot cohort	7
Risk factors for gut colonization with vancomycin-resistant enterococci among Bulgarian critically ill patients	7
Case report: Aberrant fecal microbiota composition of an infant diagnosed with prolonged intestinal botulism	7
Positive selection at core genes may underlie niche adaptation in Fusobacterium animalis	6
Recurrent Campylobacter jejuni bacteraemia with independent acquisition of carbapenem resistance in three ST9611 isolates: a case series in immunocompromised hosts	6
The influence of Akkermansia muciniphila on intestinal barrier function	6
Exploring the role of intestinal pathogenic bacteria in metronidazole-induced bone loss: focus on Klebsiella variicola	6
Bloodstream infection by Lactobacillus rhamnosus in a haematology patient: why metagenomics can make the difference	6
Whole-genome sequencing analyses and antibiotic resistance situation of 48 Helicobacter pylori strains isolated in Zhejiang, China	6
The beneficial effects of commensal E. coli for colon epithelial cell recovery are related with Formyl peptide receptor 2 (Fpr2) in epithelial cells	6
Comprehensive full genome analysis of norovirus strains from eastern India, 2017–2021	6
Mycobacterium tuberculosis infection disrupts gut and respiratory microbial communities and networks with incomplete restoration after two months of treatment	6
Synergistic potentiation of antibiotics by chamomile phytochemicals against multidrug-resistant Helicobacter pylori	6
Multi-aspect therapeutic effects of a polyphenolic herbal formulation Cirsium japonicum, Scutellaria baicalensis, Paeonia japonica, and Glycyrrhiza uralensis on ulcerative colitis: inflammation modula	6
Interpreting probiotic and combination-therapy studies in Blastocystis	6
Correction: The beneficial effects of commensal E. coli for colon epithelial cell recovery are related with Formyl peptide receptor 2 (Fpr2) in epithelial cells	6
Fecal microbiota transplantation alleviates immunosuppressant-associated diarrhea and recurrent urinary tract infection in kidney transplant recipients: a retrospective analysis	6
Investigating the relationship between intestinal microbiota and Th1/Th2/Th17 imbalance in subclinical hypothyroidism during the first half of pregnancy: a multi-omics approach	6
Gut colonization with vancomicyn-resistant enterococci among patients with hematologic malignancies	6
Gut microbiome and gastric cancer: microbial interactions and therapeutic potential	6
Prevalence of Helicobacter pylori infection and effectiveness of first-line triple eradication therapy among dyspeptic patients at hospitals in Hawassa City, Ethiopia: a cross-sectional follow-up stud	6
Network analysis of gut microbial communities reveal key genera for a multiple sclerosis cohort with Mycobacterium avium subspecies paratuberculosis infection	6
Unveiling the hidden threat: prevalence of Enterocytozoon bieneusi and other intestinal parasitic infections among organ transplant recipients in Southern Iran	5
Retraction Note: Detection of SARS-CoV-2 from patient fecal samples by whole genome sequencing	5
Acute gastroenteritis due to Arcobacter butzleri: an emerging pathogen	5
Using whole-genome sequencing (WGS) to plot colorectal cancer-related gut microbiota in a population with varied geography	5
Grape seed and skin extract, a potential prebiotic with anti-obesity effect through gut microbiota modulation	5
Phenotypic characterization and complete genome of a tumorigenic pathobiont Escherichia coli LI60C3	5
Retraction Note to: EV71 virus reduces Nrf2 activation to promote production of reactive oxygen species in infected cells	5
Effect of bile reflux on gastric juice microbiota in patients with different histology phenotypes	5
Helicobacter hepaticus CdtB promoted brain impairment in BALB/c mice via gut-brain axis	5
The association between Helicobacter pylori infection and the risk for gout in hyperuricemia patients in China – A cross-sectional study	5
Chronic hepatitis B virus infection imbalances short-chain fatty acids and amino acids in the liver and gut via microbiota modulation	5
Selective depletion of Campylobacter jejuni via T6SS dependent functionality: an approach for improving chickens gut health	5
Maternal separation during breastfeeding as a risk factor for developing giardiasis: evaluation in a rodent model	5
Feco-prevalence and risk factors of Helicobacter pylori infection among adults with dyspepsia in Mogadishu, Somalia: a cross-sectional study	5
Severe asthma patient with secondary Citrobacter koseri abdominal infection: first case report and review of the literature	5
Pathogenicity of Arcobacter cryaerophilus in two human intestinal cell lines	5
A multi-omics study to investigate the progression of the Correa pathway in gastric mucosa in the context of cirrhosis	5
Efficacy of colistin-based combinations against pandrug-resistant whole-genome-sequenced Klebsiella pneumoniae isolated from hospitalized patients in Egypt: an in vitro/vivo comparative study	5
Species-level dynamics of gastric microbiome after Helicobacter pylori eradication in high-risk Mongolian population	5
Dietary and lifestyle associations with microbiome diversity	5
High prevalence of carbapenem resistance and clonal expansion of blaNDM gene in Klebsiella pneumoniae isolates in an Iranian referral pediatric hospital	5
CMTM3 protects the gastric epithelial cells from apoptosis and promotes IL-8 by stabilizing NEMO during Helicobacter pylori infection	4
Metagenomics revealed a correlation of gut phageome with autism spectrum disorder	4
Recalcitrant intussusception: exploring potential associations with Helicobacter pylori infection - a case report and literature review	4
Vibrio cholerae O1 associated with recent endemic cholera shows temporal changes in serotype, genotype, and drug-resistance patterns in Bangladesh	4
Extracellular vesicles in intestinal protozoa: hidden mediators of host-parasite communication	4
Effects of exogenous protease supplementation of diets containing animal proteins or not on Campylobacter jejuni colonization and on the intestinal microbiota of broiler chickens	4
Profiling gut microbiota of colorectal cancer in Indonesia: a focus on beneficial taxa depletion	4
Cross-organ multi-omics profiling of microbiome and metabolome along the gut–liver axis in MASH model mice induced by western diet and MC4R knockout	4
Progress and prospects of gut microbiota-targeted therapy for primary biliary cholangitis	4
Prevalence of pathogens associated with neonatal gastrointestinal infections: a systematic review and meta-analysis	4
TRIM32 reduced the recruitment of innate immune cells and the killing capacity of Listeria monocytogenes by inhibiting secretion of chemokines	4
Editorial Expression of Concern: Emerging role of bacterial outer membrane vesicle in gastrointestinal tract	4
Risk factors for peptic ulcer bleeding one year after the initial episode	4

The gut metagenomics and metabolomics signature in patients with inflammatory bowel disease	4
Gut microbiome in gastrointestinal neoplasms: from mechanisms to precision therapeutic strategies	4
Polymorphism of virulence genes and biofilm associated with in vitro induced resistance to clarithromycin in Helicobacter pylori	4
Gut microbiota in the early stage of Crohn’s disease has unique characteristics	4
Mutational landscape of the surface antigen of hepatitis B virus in patients with hepatocellular carcinoma	4
Lactobacillus reuteri DSM 17,938 ameliorates LPS-induced depression-like and anxiety-like behaviors by modulating gut microbiota and brain metabolic function	4
Strain-specific effects of probiotics on depression and anxiety: a meta-analysis	3
Amoxicillin modulates gut microbiota to improve short-term high-fat diet induced pathophysiology in mice	3
Constituents of stable commensal microbiota imply diverse colonic epithelial cell reactivity in patients with ulcerative colitis	3
Differences in epidemiology of enteropathogens in children pre- and post-rotavirus vaccine introduction in Kilifi, coastal Kenya	3
Washed microbiota transplantation stopped recurrent sepsis in a patient with myelofibrosis: a case report	3
Production of highly immunogenic and safe Triton X-100 produced bacterial ghost vaccine against Shigella flexneri 2b serotype	3
Structured multicellular intestinal spheroids (SMIS) as a standardized model for infection biology	3
Temporal changes in the positivity rate of common enteric viruses among paediatric admissions in coastal Kenya, during the COVID-19 pandemic, 2019–2022	3
Chicken as a carrier of emerging virulent Helicobacter species: a potential zoonotic risk	3
The microbiological and clinical characteristics of 1,204 human cases of Aliarcobacter spp. infections that occurred in France between 2002 and 2024	3
Intravenous antibiotics in preterm infants have a negative effect upon microbiome development throughout preterm life	3
Fecal microbiota from hepatitis B-infected individuals alters triglyceride metabolism and microbial pathways in mice	3
Sero—salivary detection of H. pylori immunoglobulins and parasitic infection among healthcare individuals suffering from gastrointestinal disorders with correlation to personal hygiene	3
Exploring the role of gut microbiota in inflammatory bowel disease patients comorbid with non-alcoholic fatty liver disease	3
Genome analysis and virulence gene expression profile of a multi drug resistant Salmonella enterica serovar Typhimurium ms202	3
Long-read 16S rRNA amplicon sequencing reveals microbial characteristics in patients with colorectal adenomas and carcinoma lesions in Egypt	3
Tracing the evolutionary dynamics of carbapenem-resistant Escherichia coli in recurrent and multi-site infections	3
Altered mucosal bacteria and metabolomics in patients with Peutz–Jeghers syndrome	3
TRS-PCR profiles correlate with polymorphisms of the genomic o454-nlpD region, virulence factors repertoire, and phylogenetic groups among uropathogenic Escherichia coli strains isolated from patients	3
Heterogeneity of Clostridioides difficile asymptomatic colonization prevalence: a systematic review and meta-analysis	3
Strain-resolved metagenomic analysis of the gut as a reservoir for bloodstream infection pathogens among premature infants in Singapore	3
Fecal profiling reveals a common microbial signature for pancreatic cancer in Finnish and Iranian cohorts	3