OOIR: Observatory of International Research

Papers

(The TQCC of Gut Pathogens is 9. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-05-01 to 2024-05-01.)

Article	Citations
Gut microbiota influence in type 2 diabetes mellitus (T2DM)	92
Eubacterium rectale contributes to colorectal cancer initiation via promoting colitis	56
Designing a novel multi-epitope vaccine to evoke a robust immune response against pathogenic multidrug-resistant Enterococcus faecium bacterium	51
Development of a highly effective low-cost vaporized hydrogen peroxide-based method for disinfection of personal protective equipment for their selective reuse during pandemics	51
Mechanisms and microbial influences on CTLA-4 and PD-1-based immunotherapy in the treatment of cancer: a narrative review	46
In silico molecular docking and in vitro antimicrobial efficacy of phytochemicals against multi-drug-resistant enteroaggregative Escherichia coli and non-typhoidal Salmonella spp.	34
Interplay between severities of COVID-19 and the gut microbiome: implications of bacterial co-infections?	34
Metagenomic analysis of gut microbiome and resistome of diarrheal fecal samples from Kolkata, India, reveals the core and variable microbiota including signatures of microbial dark matter	33
Plasmid mediated colistin resistant mcr-1 and co-existence of OXA-48 among Escherichia coli from clinical and poultry isolates: first report from Nepal	32
Role of interferon gamma in SARS-CoV-2-positive patients with parasitic infections	32
The use of biomarkers associated with leaky gut as a diagnostic tool for early intervention in autism spectrum disorder: a systematic review	32
Association of small intestinal bacterial overgrowth with Parkinson’s disease: a systematic review and meta-analysis	31
Ectopic gut colonization: a metagenomic study of the oral and gut microbiome in Crohn’s disease	27
Emergence of plasmid-mediated mcr genes from Gram-negative bacteria at the human-animal interface	25
Genome sequences of two clinical Escherichia coli isolates harboring the novel colistin-resistance gene variants mcr-1.26 and mcr-1.27	24
Gut microbiota of patients with different subtypes of gastric cancer and gastrointestinal stromal tumors	23
Evaluation of multiplex ARMS-PCR for detection of Helicobacter pylori mutations conferring resistance to clarithromycin and levofloxacin	22
Fusobacterium nucleatum infection correlates with two types of microsatellite alterations in colorectal cancer and triggers DNA damage	22
Host responses to Clostridium perfringens challenge in a chicken model of chronic stress	21
Potential role of intestinal microflora in disease progression among patients with different stages of Hepatitis B	21
Antimicrobial resistance patterns and genetic elements associated with the antibiotic resistance of Helicobacter pylori strains from Shanghai	19
CagA orchestrates eEF1A1 and PKCδ to induce interleukin-6 expression in Helicobacter pylori-infected gastric epithelial cells	19
Antibiotic resistance and detection of plasmid mediated colistin resistance mcr-1 gene among Escherichia coli and Klebsiella pneumoniae isolated from clinical samples	19
Prevalence, antimicrobial resistance, and genotyping of Shiga toxin-producing Escherichia coli in foods of cattle origin, diarrheic cattle, and diarrheic humans in Egypt	18
Relationship between gut microbiome diversity and hepatitis B viral load in patients with chronic hepatitis B	18

The gut metagenomics and metabolomics signature in patients with inflammatory bowel disease	17
Bacteroides, butyric acid and t10,c12-CLA changes in colorectal adenomatous polyp patients	17
Toxigenic and non-toxigenic patterns I, II and III and biofilm-forming ability in Bacteroides fragilis strains isolated from patients diagnosed with colorectal cancer	16
Impact of azithromycin mass drug administration on the antibiotic-resistant gut microbiome in children: a randomized, controlled trial	16
Virulence among different types of hypervirulent Klebsiella pneumoniae with multi-locus sequence type (MLST)-11, Serotype K1 or K2 strains	16
Transcriptional regulation of the virulence genes and the biofilm formation associated operons in Vibrio parahaemolyticus	15
Understanding Horizontal Gene Transfer network in human gut microbiota	15
A nineteen-year report of serotype and antimicrobial susceptibility of enteric non-typhoidal Salmonella from humans in Southern India: changing facades of taxonomy and resistance trend	15
Hepatitis D: challenges in the estimation of true prevalence and laboratory diagnosis	15
Assessing the impact of storage time on the stability of stool microbiota richness, diversity, and composition	14
Exosomal CagA from Helicobacter pylori aggravates intestinal epithelium barrier dysfunction in chronic colitis by facilitating Claudin-2 expression	14
Prevalence, antimicrobial susceptibility and virulence gene profiles of Arcobacter species isolated from human stool samples, foods of animal origin, ready-to-eat salad mixes and environmental water	14
Clinical manifestations, risk factors, and prognostic factors of cytomegalovirus enteritis	13
Proton pump inhibitors use and risk of developing spontaneous bacterial peritonitis in cirrhotic patients: A systematic review and meta-analysis	13
Detection of SARS-CoV-2 from patient fecal samples by whole genome sequencing	13
Gut microbiota imbalance in colorectal cancer patients, the risk factor of COVID-19 mortality	13
Geographic distribution of the cagA, vacA, iceA, oipA and dupA genes of Helicobacter pylori strains isolated in China	13
How to boost the immune defence prior to respiratory virus infections with the special focus on coronavirus infections	12
Prevalence of pks + bacteria and enterotoxigenic Bacteroides fragilis in patients with colorectal cancer	12
Influence of lincomycin-spectinomycin treatment on the outcome of Enterococcus cecorum infection and on the cecal microbiota in broilers	11
Gut microbiota in the early stage of Crohn’s disease has unique characteristics	11
Emerging role of bacterial outer membrane vesicle in gastrointestinal tract	11
Presence of plasmid-mediated quinolone resistance (PMQR) genes in non-typhoidal Salmonella strains with reduced susceptibility to fluoroquinolones isolated from human salmonellosis in Gyeonggi-do, Sou	11
Type IV secretion of Helicobacter pylori CagA into oral epithelial cells is prevented by the absence of CEACAM receptor expression	11
The emerging role of neutrophilic extracellular traps in intestinal disease	11
Genetic relatedness of the Enterococcus faecalis isolates in stool and urine samples of patients with community-acquired urinary tract infection	11
Impact of Helicobacter pylori eradication on the gastric microbiome	11
Emerging applications of phage therapy and fecal virome transplantation for treatment of Clostridioides difficile infection: challenges and perspectives	10
The genomic characterisation and comparison of Bacillus cereus strains isolated from indoor air	10
Improved gut microbiota features after the resolution of SARS‑CoV‑2 infection	10
Microbiome profiling of rotavirus infected children suffering from acute gastroenteritis	10
Genomic patterns and characterizations of chromosomally-encoded mcr-1 in Escherichia coli populations	10
Changing serotypes of hand, foot and mouth disease in Shanghai, 2017–2019	10
Enterotoxigenic Bacteroides fragilis activates IL-8 expression through Stat3 in colorectal cancer cells	10
Potential capacity of interferon-α to eliminate covalently closed circular DNA (cccDNA) in hepatocytes infected with hepatitis B virus	10
Effect of probiotic supplementation on gastrointestinal motility, inflammation, motor, non-motor symptoms and mental health in Parkinson’s disease: a meta-analysis of randomized controlled trials	10
MiR-146a rs2910164 G > C polymorphism modulates Notch-1/IL-6 signaling during infection: a possible risk factor for Crohn’s disease	10
The role of mycobiota-genotype association in inflammatory bowel diseases: a narrative review	9
The prophylactic effects of BIFICO on the antibiotic-induced gut dysbiosis and gut microbiota	9
Grape seed and skin extract, a potential prebiotic with anti-obesity effect through gut microbiota modulation	9
Mixtures of natural antimicrobials can reduce Campylobacter jejuni, Salmonella enterica and Clostridium perfringens infections and cellular inflammatory response in MDCK cells	9
Effect of crude polysaccharide from seaweed, Dictyopteris divaricata (CDDP) on gut microbiota restoration and anti-diabetic activity in streptozotocin (STZ)-induced T1DM mice	9