Environmental Microbiology Reports

Article	Citations
Environmental Microbiome of Tyrophagus Putrescentiae Culture and Its Changes in Manipulative Experiments	83
Chromium‐Tanned Leather and Microbial Consortia: Identification of Taxa With Biodegradation Potential and Chromium Tolerance	79
Identifying Potential Geochemical and Microbial Impacts of Hydrogen Storage in a Deep Saline Aquifer	47
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Prevalence, Distribution and Antimicrobial Susceptibility of Enterobacteriaceae and Non‐Fermenting Gram‐Negative Bacilli Isolated From Environmental Samp	27
Tolerance to environmental pollution in the freshwater crustacean Asellus aquaticus : A role for the microbiome	25
Pressure‐dependent growth controls 3D architecture of Pseudomonas putida microcolonies	24
Microbial Communities in Agave Fermentations Vary by Local Biogeographic Regions	24
Microbial communities reveal niche partitioning across the slope and bottom zones of the challenger deep	23
Feeding strategy and feed protein level affect the gut microbiota of common carp ( Cyprinus carpio )	21
Global 16S rRNA diversity of provannid snail endosymbionts from Indo‐Pacific deep‐sea hydrothermal	21
Seasonal and interannual variability of the free‐living and particle‐associated bacteria of a coastal microbiome	20
Isolation of Acanthamoeba Species and Bacterial Symbiont Variability in Puna Salt Plains, Argentina	19
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Integrated Analysis of Gene Expression, Protein Synthesis, and Epigenetic Modifications in Alcanivorax borkumensis SK2	18
Sulfur cycling likely obscures dynamic biologically‐driven iron redox cycling in contemporary methane seep environments	18
Microorganism community structure: A characterisation of agrosystems from Madeira Archipelago	18
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Carbon metabolism and adaptation of hyperalkaliphilic microbes in serpentinizing spring of Manleluag, the Philippines	16
A genome–proteome‐based approach for xylan degradation by Cohnella sp. AR92	16
Community‐Engaged Course‐Based Undergraduate Research of Multidrug Resistance in Escherichia coli	16
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Rooting for Success: The Role of Microorganisms in Promoting Growth and Resilience in Black Alder Seedlings	16
Activity and abundance of methanotrophic bacteria in a northern mountainous gradient of wetlands	15
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Microbiome Dynamics in Early Life Stages of the Precious Mediterranean Red Coral Corallium rubrum	15
Regulation of nitrogen transformation and microbial community by inoculation during livestock manure composting	13
Functional Characterisation of Microbial Communities Related to Black Stain Formation in Lascaux Cave	13
Awareness of Microbiological Safety in Playgrounds Amid Rising Antibiotic Resistance	13
Succession and assembly mechanisms of seawater prokaryotic communities along an extremely wide salinity gradient	13
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A new metabolic trait in an acetogen: Mixed acid fermentation of fructose in a methylene‐tetrahydrofolate reductase mutant of Acetobacterium woodii	12
Peritrichs (Ciliophora, Peritrichia) in the Danube: Keystone Organisms in the Formation of Diverse Protist Biofilms	12
Population structure and pathogen interaction of Escherichia coli in freshwater: Implications of land‐use for water quality and public health in Aotearoa	12
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Microbiomes in agroecosystem: Diversity, function and assembly mechanisms	12
Unveiling Short‐Scale Responses: How Pico‐ and Nanoeukaryotic Plankton Navigate Environmental Variability in a Coastal Upwelling System	12
Unravelling Intrinsic and Extrinsic Factors Shaping the Rich Communities on Lizard Skin	12
More Than a Stick in the Mud: Eelgrass Leaf and Root Bacterial Communities Are Distinct From Those on Physical Mimics	11
Dust sprinkling as an effective method for infecting layer chickens with wild‐type Salmonella Typhimurium and changes in h	11
Paracoccus kondratievae produces poly(3‐hydroxybutyrate) under elevated temperature conditions	11
How do high phosphate concentrations affect soil microbial communities after a century of ecosystem self‐reclamation?	11
Microbiota and Quality Indexes of Commercial Sauerkraut and Fermented Cucumbers	11
Year‐Round Quantification, Structure and Dynamics of Epibacterial Communities From Diverse Macroalgae Reveal a Persistent Core Microbiota and Strong Host Specificities	11
Conserved infections and reproductive phenotypes of Wolbachia symbionts in Asian tortrix moths	11
Dehalococcoides mccartyi strain NIT01 grows more stably in vessels made of pure titanium rather than the stainless alloy	11
Bacterial endophytic community composition varies by hemp cultivar in commercially sourced seed	11
Beyond Methane Oxidation: The Protein Landscape of ANME ‐2a Reveals an Integrated System for Diazotrophy and Membrane Fortification	11
Metabolic versatility of aerobic methane‐oxidizing bacteria under anoxia in aquatic ecosystems	11
Trophic interrelationships of bacteria are important for shaping soil protist communities	10
Insights Into the Mondia Whitei Microbiome Across Geographic Regions in Eastern Africa	10
Symbioses of alvinocaridid shrimps from the South West Pacific: No chemosymbiotic diets but conserved gut microbiomes	10
Salinity Negatively Impacts Protistan and Fungal Community Stability and Shapes Assembly Processes in Freshwater Ecosystems	10
Whole‐cell studies of substrate and inhibitor specificity of isoprene monooxygenase and related enzymes	10
Issue Information	10
A quantitative sequencing method using synthetic internal standards including functional and phylogenetic marker genes	9
Temporal and Spatial Survey on the Abundance of Amoebae and Bacteria in an Estuary and the Role of Environmental Parameters	9
Genome‐resolved metagenomics revealed novel microbial taxa with ancient metabolism from macroscopic microbial mat structures inhabiting anoxic deep reefs of a Maldivian Blue Hole	9
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Wolbachia modify host cell metabolite profiles in response to short‐term temperature stress	9
Evidence of a putative CO 2 delivery system to the chromatophore in the photosynthetic amoeba Paulinella	9
Synergistic mechanisms of humic acid and biomineralization in cadmium remediation using Lysinibacillus fusiformis	9
Isolation and Characterisation of Bacteria From an Extremely High Boron and Salinity‐Tolerant Puccinellia distans	9
Genome‐resolved metagenomics identifies novel active microbes in biogeochemical cycling within methanol‐enriched soil	8
2024 Bangladesh Floodwaters Harbour Regional Hotspots of Pathogens and Antimicrobial Resistance	8
Seasonal Transition in the Dominance of Photoautotrophic and Heterotrophic Protists in the Photic Layer of a Subtropical Marine Ecosystem	8
Global expansion of Vibrio spp. in hot water	8
Observations Concerning Rhizobium tropici Bacteroid Phosphorus Stress Response During Symbiosis Wi	8
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Wolbachia in Antarctic terrestrial invertebrates: Absent or undiscovered?	8
Refining Viral Production Estimation	8
Microbiome Composition in a Common Mediterranean Bryozoan Following an Unprecedented Marine Heatwave	8
O ‐acetylesterase activity of Bifidobacterium bifidum sialidase facilities the liberation of sialic acid and encourages the pr	7

Seasonal Host Shifts for Legionella Within an Industrial Water‐Cooling System	7
Is the gut microbiome of insects a potential source to meet UN sustainable development goals to eliminate plastic pollution?	7
The impacts of water quality on the amphibian chytrid fungal pathogen: A systematic review	7
The Effects of Humidity and Seasonality on Foliar and Root Mycobiomes of Betula pendula	7
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Increased Nutrient Levels Enhance Bacterial Exopolysaccharides Production in the Context of Algae	7
Desert plants, arbuscular mycorrhizal fungi and associated bacteria: Exploring the diversity and role of symbiosis under drought	7
Acidophilic sulphate‐reducing bacteria: Diversity , ecophysiology, and applications	7
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Influence of Plant Species and De‐Icing Salt on Microbial Communities in Bioretention	7
Withdrawn: The two‐component system RstAB regulates production of a polysaccharide capsule with a role in virulence in the marine pathogen	7
Ecology and Pathogenicity for Honey Bee Brood of Recently Described Paenibacillus melissococcoides and Comparison With Paenibacill	7
New bacterial strains for ibuprofen biodegradation: Drug removal, transformation, and potential catabolic genes	7
Nitrogen Fixation Potential in Bathypelagic Sediment of the Ice‐Covered Arctic Ocean Revealed Through Long‐Term Stable Isotope Incubations	6
Acid stress in microbes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	6
In it together: Candida–bacterial oral biofilms and therapeutic strategies	6
Functional Specialisation and Diversity Shape the Rhizosphere Microbiota of Cacao and Coffee in the Amazonas Region, Peru	6
The Functional Role of Fungi and Bacteria in Sulfur Cycling During Kelp ( Ecklonia Radiata ) Degradation: Unconventional Use of	6
Molecular Characterisation of Escherichia coli Collected From an Urban River in Johannesburg, Sout	6
Microbes controlling plant pathogens	6
Persistent tissue‐specific resident microbiota in oysters across a broad geographical range	6
Transinfected Wolbachia strains induce a complex of cytoplasmic incompatibility phenotypes: Roles	6
The contribution of beneficial wheat seed fungal communities beyond disease‐causing fungi: Advancing heritable mycobiome‐based plant breeding	6
Small RNAs in the Antarctic bacterium Pseudomonas extremaustralis responsive to oxygen availability an	6
Urbanisation and Lockdown Impact on Airborne Fungal Communities in Tropical Landscapes: A Comparative Study of Urban and Peri‐Urban Environments	6
Direct Evidence of Microbial Sunscreen Production by Scum‐Forming Cyanobacteria in the Baltic Sea	6
Pathogenic Characteristics of Shrimp Early Mortality Syndrome ( EMS )‐Causing Vibrio parahaemolyticus	6
Unique episymbiotic relationship between Candidatus Patescibacteria and Zoogloea in activated sludge flocs	6
The interactions and hierarchical effects of long‐term agricultural stressors on soil bacterial communities	6
Overwintering Does Not Affect Microbiota Diversity in Halyomorpha halys : Implications for Its Eco	6
Carbon dioxide fixation by microbes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	6
Enhancing Biodiversity‐Function Relationships in Field Retting: Towards Key Microbial Indicators for Retting Control	6
Identification of ESBL ‐Producing Enterobacterales From Vegetable Plants: Preliminary Findings From a Small Cross‐Sectional Study in a Rural Area of	6
Pyricularia oryzae enhances Streptomyces griseus growth via non‐volatile alkaline metabolites	6
Phytoplankton Under Pressure: Temperature, Precipitation and Cyanobacterial Blooms as Drivers of Chytrid Infections	6
Investigation of Suitable, Readily Available, Sources of Sulfate‐Reducing Bacteria Inoculum, and Evaluation of Sulfate Reduction Rates Achieved at Different pHs	6
Environmental Variables Influence on Spatial Distribution of Bacterial Communities Across the English Channel in Two Main Productive Seasons	6
Differential requirement for RecFOR pathway components in Thermus thermophilus	6
Microbial diversity in the arid and semi‐arid soils of Botswana	5
Bacterial symbionts of the precious coral Corallium rubrum are differentially distributed across colony‐specific compartments and differ among colormorph	5
Effects of 5‐year experimental warming in the Alpine belt on soil Archaea: Multi‐omics approaches and prospects	5
Unveiling the Microeukaryotic Landscape of the Red Coral Corallium rubrum Across the Northwestern	5
A Pilot Investigation of the Hidden Communities Associated With Dryas octopetala L. (Rosaceae) in	5
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The Effect of Larval Exposure to Plastic Pollution on the Gut Microbiota of the Major Malaria Vector Anopheles arabiensis	5
Utilization of lasso peptides for biodegradation of polycyclic aromatic hydrocarbons	5
Genomic Characterisation of Limosilactobacillus fermentum CRL2085 Unveiling	5
Nutrients mediate caffeine inhibition of Escherichia coli	5
The potential of bacterial microcompartment architectures for phytonanotechnology	5
Inactivation of siderophore iron‐chelating moieties by the fungal wheat root symbiont Pyrenophora biseptata	5
Phagotrophy in the nitrogen‐fixing haptophyte Braarudosphaera bigelowii	5
Genetic Drivers of Plant Root Colonisation by the Biocontrol Agent Pseudomonas protegens Pf‐5	5
Cereal leaf beetle‐associated bacteria enhance the survival of their host upon insecticide treatments and respond differently to insecticides with different modes of action	5
National‐scale distribution of protists associated with sorghum leaves and roots	5
High‐affinity amide‐lanthanide adsorption to gram‐positive soil bacteria	5
Subtle changes in topsoil microbial communities of drained forested peatlands after prolonged drought	5
Fungal Community Assembly in Standing Deadwood: Stochastic vs. Deterministic Processes Across Decay Stages*	5
Exploring Microbiological Dynamics in a Salt Cavern for Potential Hydrogen Storage Use	5
The Endosymbiont Consortia of Two Cixiidae Planthoppers Reveal an Ancient Symbiosis With ‘ Candidatus Mirabilia Symbiotica’	5
Climate change and antibiotic resistance: A scoping review	5
Discovery of a new bacterium, Microbacterium betulae sp. nov., in birch wood associated with hypersensitivity pneumonitis in woodworkers	5
The Alkane 1‐Monooxygenase Gene alkB of Pseudom	5
Bacterial Communities Associated With Acute Oak Decline of Sessile Oak ( Quercus petraea ) in Sout	5
HSP104 and HSP20 ‐L Are Required by Aspergillus nidulans in Response to	5
Microbes and hydrothermal environments: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	5
Inducible Volatile Chemical Signalling Drives Antifungal Activity of Trichoderma hamatum GD12	5
Halomonas alkaliantarctica as a platform for poly(3‐hydroxybutyrate‐ co ‐3‐hydroxyvalerate) production from biodiesel‐derived	4
How do phytophagous insects affect phyllosphere fungi? Tracking fungi from milkweed to monarch caterpillar frass reveals communities dominated by fungal yeast	4
Potential for homoacetogenesis via the Wood–Ljungdahl pathway in Korarchaeia lineages from marine hydrothermal vents	4
Bioleaching Microbial Community Metabolism and Composition Driven by Copper Sulphide Mineral Type	4
Temporal and Depth‐Driven Variability of Pelagic Bacterial Communities in Lake Erie: Biofilm and Plankton Dynamics	4
On the Difficulty to Detect Carbapenem Resistance in the Environment: Characterisation of Escherichia coli With Reduced Carbapenem Susceptibility Isolate	4
Zoonotic bacterial and parasitic intestinal pathogens in foxes, raccoons and other predators from eastern Germany	4
Physiological response mechanism of heavy metal‐resistant endophytic fungi isolated from the roots of Polygonatum kingianum	4
Plastic‐Microbial BioRemediation DB : A Curated Database for Multi‐Omics Applications	4
Strengthen or Weaken: Evolutionary Directions of Cross‐Feeding After Formation	4
Light‐dependent niche differentiation in two mixotrophic bacterivores	4
Effects of different short‐term tillage managements on rhizosphere soil autotrophic CO 2	4
Metagenomic airborne resistome from urban hot spots through the One Health lens	4
Bacteria on the foundational kelp in kelp forest ecosystems: Insights from culturing, whole genome sequencing and metabolic assays	4

Environmental processes and health implications potentially mediated by dust‐borne bacteria	4
The etherase system of Novosphingobium sp. MBES04 functions as a sensor of lignin fragments through ph	4
Niche selection in bacterioplankton: A study of taxonomic composition and single‐cell characteristics in an acidic reservoir	4
The assessment of microbial ecology: a special emphasis on the Indian scenario	4
Surveillance of influenza A and B viruses from community and hospital wastewater treatment plants	4
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Biotechnological Potential of a Novel Strain of Fusarium proliferatum , a Terrestrial Fungus Adapted to Marine Environment	4
Comparative analysis of enzymatic profiles and biofilm formation in clinical and environmental Candida kefyr	4
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Strategies of organic phosphorus recycling by soil bacteria: acquisition, metabolism, and regulation	4
Bioavailable Dissolved Organic Carbon Serves as a Key Regulator of Phosphorus Dynamics in Stream Biofilms	4
The ‘microbiome counterattack’: Insights on the soil and root‐associated microbiome in diverse chickpea and lentil genotypes after an erratic rainfall event	4
The Digestive Microbiome Diversity of the Least Killifish, Heterandria formosa , and Its Implicati	4
At what cost? The impact of bacteriophage resistance on the growth kinetics and protein synthesis of Escherichia coli	4
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In vitro interactions between Bradyrhizobium spp. and Tuber magnatum mycelium	4
Functional genome mining and taxono‐genomics reveal eco‐physiological traits and species distinctiveness of aromatic‐degrading Pseudomonas bharatica sp.	4
Limited variation in microbial communities across populations of Macrosteles leafhoppers (Hemiptera: Cicadellidae)	3
The rootstock modifies the arbuscular mycorrhizal community of the root system, while the influence of the scion is limited in grapevines	3
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Root inoculation with soil‐borne microorganisms alters gut bacterial communities and performance of the leaf‐chewer Spodoptera exigua	3
Metagenomic analysis of microbial consortia native to the Amazon, Highlands, and Galapagos regions of Ecuador with potential for wastewater remediation	3
The Ammonia Oxidising Archaeon Nitrosopumilus maritimus Does Not Alter Iodine Oxidation State in Oxic Seawater	3
Distinct oxygen isotope fractionations driven by different electron donors during microbial nitrate reduction in lake sediments	3
Plant species‐dependent transmission of Escherichia coli O157 :	3
The Biology, Microclimate, and Geology of a Distinctive Ecosystem Within the Sandstone of Hyper‐Arid Timna Valley, Israel	3
Bacterial Communities From Two Freshwater Aquaculture Systems in Northern Germany	3
The root‐associated arbuscular mycorrhizal fungal assemblages of exotic alien plants are simplified in invaded distribution ranges, but dominant species are retained: A trans‐continental perspective	3
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Microbial community metabolism	3
Broad time‐dependent transcriptional activity of metabolic genes of E. coli O104:H4 strain C227/11Φcu in a soil microenvironment at low temperature	3
Microbial perspective of inhibited carbon turnover in Tangel humus of the Northern Limestone Alps	3
Fungal microbiomes associated with Lycopodiaceae during ecological succession	3
Transcriptomic evidence for an energetically advantageous relationship between Syntrophomonas wolfei and Methanothrix soehngenii	3
Three‐domain microbial communities in the gut of Pachnoda marginata larvae: A comparative study revealing opposing trends in gut compartments	3
Wolbachia confers protection against the entomopathogenic fungus Metarhizium pingshaense in African Aed	3
AHLS ‐pred: a novel sequence‐based predictor of acyl‐homoserine‐lactone synthases using machine learning algorithms	3
Deciphering microbial communities involved in marine steel corrosion using high‐throughput amplicon sequencing	3
Matrix‐producing cells formed ‘Van Gogh bundles’ facilitate Bacillus subtilis biofilm self‐healing	3
A preliminary survey of the cellular responses of the black fungus Cryomyces antarcticus to long and short‐term dehydration	3
High calcium and strontium uptake by the green microalga Tetraselmis chui is related to micropearl	3
Young maize plants impact the bacterial community in Australian cotton‐sown vertisol more than agricultural practices	3
Freshwater Discharge and Salinity Drive Taxonomic and Functional Turnover of Microbial Communities in a Turbid Macrotidal Estuary	3
Polyfluorinated compound biodegradation: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	3
Electrochemical Detection of Carbon Steel Corrosion Induced by Fermentative Bacteria From Natural Gas Transmission Lines	3
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Primary and Secondary Symbionts of Cambodian Cicadellidae and the Role of Parasitisation	3
Plankton and marine aggregates as transmission vectors for V. aestuarianus 02/041 infecting the pacific oyster Crassostrea gigas	3
Detection, fate and transport of the biohazardous agent Toxoplasma gondii in soil water systems: Influence of soil physicochemical properties, water chem	3
Genomic adaptation of Burkholderia anthina to glyphosate uncovers a novel herbicide resistance mechanism	3
Community‐Level Metabolic Shifts Following Land Use Change in the Amazon Rainforest Identified by a Supervised Machine Leaning Approach	3
Coupling the electrocatalytic dechlorination of 2,4‐ D with electroactive microbial anodes	3
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Molecular and metabolic characteristics of wastewater associated Escherichia coli strains	3
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Changes in soil microbial communities after exposure to neonicotinoids: A systematic review	3
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Report on Vibrio Species Contamination in Shrimp From the Coast of Pangandaran, West Java, Indonesia	3
The Lon protease negatively regulates pyoluteorin biosynthesis through the Gac/ Rsm‐RsmE cascade and directly degrades the transcriptional activator	3
Acidophilic methanotrophs: Occurrence, diversity, and possible bioremediation applications	3
Metabolomic and Genomic Analysis of Bioactive Compounds of Phacidium infestans Karsten DSM 5139 Cultivated on Pinus sylvestris	3
Niche differentiation of atmospheric methane‐oxidizing bacteria and their community assembly in subsurface karst caves	2
In search of the pH limit of growth in halo‐alkaliphilic cyanobacteria	2
Climate change and the aquatic continuum: A cyanobacterial comeback story	2
The growth‐survival trade‐off is hard‐wired in the Lactococcus lactis gene regulation network	2
Interplay of intracellular and trans‐cellular DNA methylation in natural archaeal consortia	2
Correction to “ SAR11 clade microdiversity and activity during the early spring blooms off Kerguelen Island, Southern Ocean”	2
Methodological ‘lenses’ influence the characterization of phytoplankton dynamics in a coastal upwelling ecosystem	2
Phenolic Iron Complexes Protect Glacier Ice Algae (Zygnematophyceae) Against Excessive UV and VIS	2
Heterotrophic bacteria trigger transcriptome remodelling in the photosynthetic picoeukaryote Micromonas commoda	2
Diel Bacterioplankton Community Dynamics Under Contrasting Light Regimes	2
Optimisation of Laccase Activity From Bacillus atrophaeus Using Response Surface Methodology: A Proof‐Of‐Concept Dye Decolourisation Study	2
Assembly Patterns and Functional Roles of Bacterial Generalists and Specialists in the Remediation of Saline–Alkali Soils	2
The Desert in Bottles: The Culturable Microbiome of the Atacama Desert's Grit Crust	2
Research progress of anaerobic ammonium oxidation (Anammox) process based on integrated fixed‐film activated sludge ( IFAS )	2
Studying the microbiome of suppressive soils against vascular wilt, caused by Fusarium oxysporum in cape gooseberry ( Physalis per	2
Pectobacterium versatile β‐Lactamase Contributes to Soft Rot Pectob	2
Phototrophic Fe( II ) oxidation benefits from light/dark cycles	2
Bioprospecting Microbial Consortia for Tebuthiuron Degradation in Agricultural Soils: An Alternative Bayesian‐Driven Colorimetric Protocol	2
Laboratory Experiments Suggest a Limited Impact of Increased Nitrogen Deposition on Snow Algae Blooms	2
Phenyl Acid Induced Inhibition of Methanogenesis in CO 2 Reducing Organi	2
Rumen protozoa are a hub for diverse hydrogenotrophic functions	2
Metatranscriptomic shifts suggest shared biodegradation pathways for Corexit 9500 components and crude oil in Arctic seawater	2
Enhancing Wastewater Treatment Efficiency: Utilising Saponification Products for Sustainable Cleaning Processes	2
Combined DNA / RNA Amplicon Sequencing and Metatranscriptomics Reveals Microbial‐Driven Nutrient T	2
Diversity of soil fungi and entomopathogenic fungi in subtropical mountain forest in southwest China	2
A Monitoring Method to Evaluate the Accumulation of Antimicrobial‐Resistance Genes in Gram‐Negative Bacteria Distributed in Environmental Water	2
Recovery of culturable Streptococcus pyogenes from swabs stored at different temperatures	2
Genomic Analysis and Virulence Features of Vibrio cholerae Non‐ O1 /Non‐ O139	2
Kinetics and pathways of sub‐lithic microbial community (hypolithon) development	2
Whole cell affinity for 4‐amino‐5‐hydroxymethyl‐2‐methylpyrimidine ( HMP ) in the marine bacterium Candidatus	2
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Isolation of a Novel Plant Growth‐Promoting Dyella sp. From a Danish Natural Soil	2
The Interaction Between the Nematode Caenorhabditis elegans and Its Coexisting Fungal Microbiome Member Barnettozyma californica	2
Structure of Aspergillus flavus populations associated with maize in Greece, Spain, and Serbia: Implications for aflatoxin biocontrol on a regional scale	2