Environmental Microbiology Reports

Article	Citations
	63
Global 16S rRNA diversity of provannid snail endosymbionts from Indo‐Pacific deep‐sea hydrothermal vents	63
Pressure‐dependent growth controls 3D architecture of Pseudomonas putida microcolonies	40
Cyanobacterial community composition and their functional shifts associated with biocrust succession in the Gurbantunggut Desert	39
Prevalence, Distribution and Antimicrobial Susceptibility of Enterobacteriaceae and Non‐Fermenting Gram‐Negative Bacilli Isolated From Environmental Samples in a Veterinary Clinical Hospital in	30
Tolerance to environmental pollution in the freshwater crustacean Asellus aquaticus: A role for the microbiome	29
Feeding strategy and feed protein level affect the gut microbiota of common carp (Cyprinus carpio)	28
Seasonal and interannual variability of the free‐living and particle‐associated bacteria of a coastal microbiome	26
Microbial Communities in Agave Fermentations Vary by Local Biogeographic Regions	25
Identifying Potential Geochemical and Microbial Impacts of Hydrogen Storage in a Deep Saline Aquifer	24
Microbial communities reveal niche partitioning across the slope and bottom zones of the challenger deep	22
Chromium‐Tanned Leather and Microbial Consortia: Identification of Taxa With Biodegradation Potential and Chromium Tolerance	22
Environmental Microbiome of Tyrophagus Putrescentiae Culture and Its Changes in Manipulative Experiments	21
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A genome–proteome‐based approach for xylan degradation by Cohnella sp. AR92	16
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Activity and abundance of methanotrophic bacteria in a northern mountainous gradient of wetlands	16
Carbon metabolism and adaptation of hyperalkaliphilic microbes in serpentinizing spring of Manleluag, the Philippines	16
Integrated Analysis of Gene Expression, Protein Synthesis, and Epigenetic Modifications in Alcanivorax borkumensis SK2 Under Iron Limitation	16
Microorganism community structure: A characterisation of agrosystems from Madeira Archipelago	15
Rooting for Success: The Role of Microorganisms in Promoting Growth and Resilience in Black Alder Seedlings	15
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Microbiome Dynamics in Early Life Stages of the Precious Mediterranean Red Coral Corallium rubrum	14
Isolation of Acanthamoeba Species and Bacterial Symbiont Variability in Puna Salt Plains, Argentina	14

Sulfur cycling likely obscures dynamic biologically‐driven iron redox cycling in contemporary methane seep environments	14
Microbiomes in agroecosystem: Diversity, function and assembly mechanisms	14
Succession and assembly mechanisms of seawater prokaryotic communities along an extremely wide salinity gradient	13
Community‐Engaged Course‐Based Undergraduate Research of Multidrug Resistance in Escherichia coli in Water Near Dairy and Hog Farms in Michigan	13
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Regulation of nitrogen transformation and microbial community by inoculation during livestock manure composting	13
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A novel, divergent alkane monooxygenase (alkB) clade involved in crude oil biodegradation	13
Herbivory shapes the rhizosphere bacterial microbiota in potato plants	13
A new metabolic trait in an acetogen: Mixed acid fermentation of fructose in a methylene‐tetrahydrofolate reductase mutant of Acetobacterium woodii	12
Dehalococcoides mccartyi strain NIT01 grows more stably in vessels made of pure titanium rather than the stainless alloy SUS304	12
Population structure and pathogen interaction of Escherichia coli in freshwater: Implications of land‐use for water quality and public health in Aotearoa New Zealand	11
More Than a Stick in the Mud: Eelgrass Leaf and Root Bacterial Communities Are Distinct From Those on Physical Mimics	11
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Unveiling Short‐Scale Responses: How Pico‐ and Nanoeukaryotic Plankton Navigate Environmental Variability in a Coastal Upwelling System	11
Paracoccus kondratievae produces poly(3‐hydroxybutyrate) under elevated temperature conditions	11
Metabolic versatility of aerobic methane‐oxidizing bacteria under anoxia in aquatic ecosystems	10
Bacterial endophytic community composition varies by hemp cultivar in commercially sourced seed	10
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Whole‐cell studies of substrate and inhibitor specificity of isoprene monooxygenase and related enzymes	10
Year‐Round Quantification, Structure and Dynamics of Epibacterial Communities From Diverse Macroalgae Reveal a Persistent Core Microbiota and Strong Host Specificities	10
Symbioses of alvinocaridid shrimps from the South West Pacific: No chemosymbiotic diets but conserved gut microbiomes	10
How do high phosphate concentrations affect soil microbial communities after a century of ecosystem self‐reclamation?	10
Conserved infections and reproductive phenotypes of Wolbachia symbionts in Asian tortrix moths	10
Dust sprinkling as an effective method for infecting layer chickens with wild‐type SalmonellaTyphimurium and changes in host gut microbiota	10
Trophic interrelationships of bacteria are important for shaping soil protist communities	10
Global expansion of Vibrio spp. in hot water	9
A quantitative sequencing method using synthetic internal standards including functional and phylogenetic marker genes	9
Wolbachia modify host cell metabolite profiles in response to short‐term temperature stress	9
Wolbachia in Antarctic terrestrial invertebrates: Absent or undiscovered?	9
Seasonal Transition in the Dominance of Photoautotrophic and Heterotrophic Protists in the Photic Layer of a Subtropical Marine Ecosystem	9
The potential of Pseudomonas for bioremediation of oxyanions	9
Genome‐resolved metagenomics revealed novel microbial taxa with ancient metabolism from macroscopic microbial mat structures inhabiting anoxic deep reefs of a Maldivian Blue Hole	9
Evidence of a putative CO2 delivery system to the chromatophore in the photosynthetic amoeba Paulinella	9
In silico analysis of diversity, specificity and molecular evolution of Stenotrophomonas phages	9
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Synergistic mechanisms of humic acid and biomineralization in cadmium remediation using Lysinibacillus fusiformis	9
Genome‐resolved metagenomics identifies novel active microbes in biogeochemical cycling within methanol‐enriched soil	9
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Genotypes and phenotypes of methicillin‐resistant staphylococci isolated from shrimp aquaculture farms	8
The impacts of water quality on the amphibian chytrid fungal pathogen: A systematic review	8
Increased Nutrient Levels Enhance Bacterial Exopolysaccharides Production in the Context of Algae	8
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Withdrawn: The two‐component system RstAB regulates production of a polysaccharide capsule with a role in virulence in the marine pathogen Photobacterium damselae subsp. damselae<	8
Seasonal Host Shifts for Legionella Within an Industrial Water‐Cooling System	8
Ecology and Pathogenicity for Honey Bee Brood of Recently Described Paenibacillus melissococcoides and Comparison With Paenibacillus dendritiformis, Paenibacillus thiaminolyticus	8
‘Candidatus Gromoviella agglomerans’, a novel intracellular Holosporaceae parasite of the ciliate Paramecium showing marked genome reduction	8
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O‐acetylesterase activity of Bifidobacterium bifidum sialidase facilities the liberation of sialic acid and encourages the proliferation of sialic acid scavenging Bifidobacterium brev	8
New bacterial strains for ibuprofen biodegradation: Drug removal, transformation, and potential catabolic genes	8
The Effects of Humidity and Seasonality on Foliar and Root Mycobiomes of Betula pendula	8
Acidophilic sulphate‐reducing bacteria: Diversity, ecophysiology, and applications	7
In it together: Candida–bacterial oral biofilms and therapeutic strategies	7
Small RNAs in the Antarctic bacterium Pseudomonas extremaustralis responsive to oxygen availability and oxidative stress	7
Acid stress in microbes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	7
Desert plants, arbuscular mycorrhizal fungi and associated bacteria: Exploring the diversity and role of symbiosis under drought	7
Carbon dioxide fixation by microbes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	7
Enhancing Biodiversity‐Function Relationships in Field Retting: Towards Key Microbial Indicators for Retting Control	7
Is the gut microbiome of insects a potential source to meet UN sustainable development goals to eliminate plastic pollution?	7
Bacterial rather than fungal diversity and community assembly drive soil multifunctionality in a subtropical forest ecosystem	7
The contribution of beneficial wheat seed fungal communities beyond disease‐causing fungi: Advancing heritable mycobiome‐based plant breeding	7
Urbanisation and Lockdown Impact on Airborne Fungal Communities in Tropical Landscapes: A Comparative Study of Urban and Peri‐Urban Environments	6
Differential requirement for RecFOR pathway components in Thermus thermophilus	6
Climate change and antibiotic resistance: A scoping review	6
Persistent tissue‐specific resident microbiota in oysters across a broad geographical range	6
Anaerobic oxidation of methane mediated by microbial extracellular respiration	6
Investigation of Suitable, Readily Available, Sources of Sulfate‐Reducing Bacteria Inoculum, and Evaluation of Sulfate Reduction Rates Achieved at Different pHs	6
Microbes controlling plant pathogens	6
Pyricularia oryzae enhances Streptomyces griseus growth via non‐volatile alkaline metabolites	6
Transinfected Wolbachia strains induce a complex of cytoplasmic incompatibility phenotypes: Roles of CI factor genes	6
The interactions and hierarchical effects of long‐term agricultural stressors on soil bacterial communities	6
Novel angular naphthopyrone formation by Arp1p dehydratase involved in Aspergillus fumigatus melanin biosynthesis	6
Overwintering Does Not Affect Microbiota Diversity in Halyomorpha halys: Implications for Its Ecology and Management	6
Identification of ESBL‐Producing Enterobacterales From Vegetable Plants: Preliminary Findings From a Small Cross‐Sectional Study in a Rural Area of Madagascar	6
Unique episymbiotic relationship between Candidatus Patescibacteria and Zoogloea in activated sludge flocs at a municipal wastewater treatment plant	6
Direct Evidence of Microbial Sunscreen Production by Scum‐Forming Cyanobacteria in the Baltic Sea	6
Inactivation of siderophore iron‐chelating moieties by the fungal wheat root symbiont Pyrenophora biseptata	6
Effects of 5‐year experimental warming in the Alpine belt on soil Archaea: Multi‐omics approaches and prospects	6
Discovery of a new bacterium, Microbacterium betulae sp. nov., in birch wood associated with hypersensitivity pneumonitis in woodworkers	6
Cereal leaf beetle‐associated bacteria enhance the survival of their host upon insecticide treatments and respond differently to insecticides with different modes of action	5
At what cost? The impact of bacteriophage resistance on the growth kinetics and protein synthesis of Escherichia coli	5
Whole‐genome sequence analysis of Staphylococcus aureus from retail fish acknowledged the incidence of highly virulent ST672‐MRSA‐IVa/t1309, an emerging Indian clone, in Assam, India	5
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Microbial diversity in the arid and semi‐arid soils of Botswana	5
Nutrients mediate caffeine inhibition of Escherichia coli	5
The potential of bacterial microcompartment architectures for phytonanotechnology	5
Subtle changes in topsoil microbial communities of drained forested peatlands after prolonged drought	5
Bioavailable Dissolved Organic Carbon Serves as a Key Regulator of Phosphorus Dynamics in Stream Biofilms	5
Zoonotic bacterial and parasitic intestinal pathogens in foxes, raccoons and other predators from eastern Germany	5
The ‘microbiome counterattack’: Insights on the soil and root‐associated microbiome in diverse chickpea and lentil genotypes after an erratic rainfall event	5
Exploring Microbiological Dynamics in a Salt Cavern for Potential Hydrogen Storage Use	5
Cocaine esterase occurrence in global wastewater microbiomes and potential for biotransformation of novel psychoactive substances	5
CORRIGENDUM	5
The ubiquitous soil verrucomicrobial clade ‘Candidatus Udaeobacter’ shows preferences for acidic pH	5
Environmental processes and health implications potentially mediated by dust‐borne bacteria	5
Utilization of lasso peptides for biodegradation of polycyclic aromatic hydrocarbons	5
National‐scale distribution of protists associated with sorghum leaves and roots	5
Phthalate hydrolase: distribution, diversity and molecular evolution	5
Microbes and hydrothermal environments: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	5
Bacterial symbionts of the precious coral Corallium rubrum are differentially distributed across colony‐specific compartments and differ among colormorphs	5
On the Difficulty to Detect Carbapenem Resistance in the Environment: Characterisation of Escherichia coli With Reduced Carbapenem Susceptibility Isolated in a French River	5
Phagotrophy in the nitrogen‐fixing haptophyte Braarudosphaera bigelowii	5
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The etherase system of Novosphingobium sp. MBES04 functions as a sensor of lignin fragments through phenylpropanone production to induce specific transcriptional responses	5
Potential for homoacetogenesis via the Wood–Ljungdahl pathway in Korarchaeia lineages from marine hydrothermal vents	4
Microbial community metabolism	4
Surveillance of influenza A and B viruses from community and hospital wastewater treatment plants	4
Biotechnological Potential of a Novel Strain of Fusarium proliferatum, a Terrestrial Fungus Adapted to Marine Environment	4
Comparative analysis of enzymatic profiles and biofilm formation in clinical and environmental Candida kefyr isolates	4
Bacterial epiphyte and endophyte communities of seagrass Thalassia hemprichii: the impact of feed extract solution	4
Effects of different short‐term tillage managements on rhizosphere soil autotrophic CO2‐fixing bacteria in a double‐cropping rice paddy field	4
Bacteria on the foundational kelp in kelp forest ecosystems: Insights from culturing, whole genome sequencing and metabolic assays	4
Scaling down the microbial loop: data‐driven modelling of growth interactions in a diatom–bacterium co‐culture	4
Functional genome mining and taxono‐genomics reveal eco‐physiological traits and species distinctiveness of aromatic‐degrading Pseudomonas bharatica sp. nov.	4
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In vitro interactions between Bradyrhizobium spp. and Tuber magnatum mycelium	4
Microbial diversity and associated metabolic potential in the supraglacial habitat of a fast‐retreating glacier: a case study of Patsio glacier, North‐western Himalaya	4
Light‐dependent niche differentiation in two mixotrophic bacterivores	4
High‐affinity amide‐lanthanide adsorption to gram‐positive soil bacteria	4
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Temporal and Depth‐Driven Variability of Pelagic Bacterial Communities in Lake Erie: Biofilm and Plankton Dynamics	4
Strategies of organic phosphorus recycling by soil bacteria: acquisition, metabolism, and regulation	4
Halomonas alkaliantarctica as a platform for poly(3‐hydroxybutyrate‐co‐3‐hydroxyvalerate) production from biodiesel‐derived glycerol	4
How do phytophagous insects affect phyllosphere fungi? Tracking fungi from milkweed to monarch caterpillar frass reveals communities dominated by fungal yeast	4
Physiological response mechanism of heavy metal‐resistant endophytic fungi isolated from the roots of Polygonatum kingianum	4
Niche selection in bacterioplankton: A study of taxonomic composition and single‐cell characteristics in an acidic reservoir	4
Efficiency and specificity ofCARD‐FISHprobes in detection of marine vibrios	4
Metagenomic airborne resistome from urban hot spots through the One Health lens	4

HSP104 and HSP20‐L Are Required by Aspergillus nidulans in Response to Attack by Fungivorous Springtail Sinella curviseta	4
Acidophilic methanotrophs: Occurrence, diversity, and possible bioremediation applications	3
Biogenic silica accumulation in picoeukaryotes: Novel players in the marine silica cycle	3
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Community‐Level Metabolic Shifts Following Land Use Change in the Amazon Rainforest Identified by a Supervised Machine Leaning Approach	3
Young maize plants impact the bacterial community in Australian cotton‐sown vertisol more than agricultural practices	3
Coupling the electrocatalytic dechlorination of 2,4‐D with electroactive microbial anodes	3
Distinct oxygen isotope fractionations driven by different electron donors during microbial nitrate reduction in lake sediments	3
Bacterial Communities From Two Freshwater Aquaculture Systems in Northern Germany	3
Plankton and marine aggregates as transmission vectors for V. aestuarianus 02/041 infecting the pacific oyster Crassostrea gigas	3
Freshwater Discharge and Salinity Drive Taxonomic and Functional Turnover of Microbial Communities in a Turbid Macrotidal Estuary	3
Plant species‐dependent transmission of Escherichia coli O157:H7 from the spermosphere to cotyledons and first leaves	3
Polyfluorinated compound biodegradation: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	3
Matrix‐producing cells formed ‘Van Gogh bundles’ facilitate Bacillus subtilis biofilm self‐healing	3
Transcriptomic evidence for an energetically advantageous relationship between Syntrophomonas wolfei and Methanothrix soehngenii	3
Microbial perspective of inhibited carbon turnover in Tangel humus of the Northern Limestone Alps	3
The copper resistance mechanism in a newly isolated Pseudoxanthomonas spadixZSY‐33	3
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Deciphering microbial communities involved in marine steel corrosion using high‐throughput amplicon sequencing	3
Detection, fate and transport of the biohazardous agent Toxoplasma gondii in soil water systems: Influence of soil physicochemical properties, water chemistry and surfactant	3
The root‐associated arbuscular mycorrhizal fungal assemblages of exotic alien plants are simplified in invaded distribution ranges, but dominant species are retained: A trans‐continental perspective	3
Genomic adaptation of Burkholderia anthina to glyphosate uncovers a novel herbicide resistance mechanism	3
AHLS‐pred: a novel sequence‐based predictor of acyl‐homoserine‐lactone synthases using machine learning algorithms	3
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Limited variation in microbial communities across populations of Macrosteles leafhoppers (Hemiptera: Cicadellidae)	3
The assessment of microbial ecology: a special emphasis on the Indian scenario	3
The Lon protease negatively regulates pyoluteorin biosynthesis through the Gac/Rsm‐RsmE cascade and directly degrades the transcriptional activator PltR in Pseudomonas protege	3
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High calcium and strontium uptake by the green microalgaTetraselmis chuiis related to micropearl formation and cell growth	3
Interplay of intracellular and trans‐cellular DNA methylation in natural archaeal consortia	3
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The rootstock modifies the arbuscular mycorrhizal community of the root system, while the influence of the scion is limited in grapevines	3
Metagenomic analysis of microbial consortia native to the Amazon, Highlands, and Galapagos regions of Ecuador with potential for wastewater remediation	3
Correction to “SAR11 clade microdiversity and activity during the early spring blooms off Kerguelen Island, Southern Ocean”	3
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Fungal microbiomes associated with Lycopodiaceae during ecological succession	3
Metabolomic and Genomic Analysis of Bioactive Compounds of Phacidium infestans Karsten DSM 5139 Cultivated on Pinus sylvestris Needles	3
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Electrochemical Detection of Carbon Steel Corrosion Induced by Fermentative Bacteria From Natural Gas Transmission Lines	3
Three‐domain microbial communities in the gut of Pachnoda marginata larvae: A comparative study revealing opposing trends in gut compartments	3
Broad time‐dependent transcriptional activity of metabolic genes of E. coli O104:H4 strain C227/11Φcu in a soil microenvironment at low temperature	3
Molecular and metabolic characteristics of wastewater associated Escherichia coli strains	3
Changes in soil microbial communities after exposure to neonicotinoids: A systematic review	3
Diel Bacterioplankton Community Dynamics Under Contrasting Light Regimes	2
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Biogeographic structure of fungal communities in seagrass Halophilia ovalis across the Malay Peninsula	2
Enhancing Wastewater Treatment Efficiency: Utilising Saponification Products for Sustainable Cleaning Processes	2
Climate change and the aquatic continuum: A cyanobacterial comeback story	2
Whole cell affinity for 4‐amino‐5‐hydroxymethyl‐2‐methylpyrimidine (HMP) in the marine bacterium CandidatusPelagibacter st. HTCC7211 explains marine dissolved <	2
Laboratory Experiments Suggest a Limited Impact of Increased Nitrogen Deposition on Snow Algae Blooms	2
Research progress of anaerobic ammonium oxidation (Anammox) process based on integrated fixed‐film activated sludge (IFAS)	2
Phototrophic Fe(II) oxidation benefits from light/dark cycles	2
The growth‐survival trade‐off is hard‐wired in the Lactococcus lactis gene regulation network	2
Bacterial community response to novel and repeated disturbances	2
In search of the pH limit of growth in halo‐alkaliphilic cyanobacteria	2
Phenolic Iron Complexes Protect Glacier Ice Algae (Zygnematophyceae) Against Excessive UV and VIS Irradiation	2
The Study of Microbial Physiology Under Microoxic Conditions Is Critical but Neglected	2
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Rumen protozoa are a hub for diverse hydrogenotrophic functions	2
Lactic acid bacteria: A sustainable solution against phytopathogenic agents	2
Structure of Aspergillus flavus populations associated with maize in Greece, Spain, and Serbia: Implications for aflatoxin biocontrol on a regional scale	2
Microbial responses to fluoride in the environment: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	2
Complete genome sequence and potential pathogenic assessment of Flavobacterium plurextorumRSG‐18 isolated from the gut of Schlegel's black rockfish, Sebastes schlegelii	2
First Insights Into the Biological and Physical–Chemical Diversity of Various Salt Ponds of Trapani, Sicily	2
Sulfate and Dissolved Organic Carbon Concentrations Drive Distinct Microbial Community Patterns in Prairie Wetland Ponds	2
Metatranscriptomic shifts suggest shared biodegradation pathways for Corexit 9500 components and crude oil in Arctic seawater	2
Bioaerosols in swine confinement buildings: A metaproteomic view	2
Niche differentiation of atmospheric methane‐oxidizing bacteria and their community assembly in subsurface karst caves	2
Wolbachia confers protection against the entomopathogenic fungus Metarhizium pingshaense in African Aedes aegypti	2
A preliminary survey of the cellular responses of the black fungus Cryomyces antarcticus to long and short‐term dehydration	2
Embracing complexity in plant–microbiome systems	2
Microbiome heterogeneity in tissues of the coral, Fimbriaphyllia (Euphyllia) ancora	2
Honey Bee Viromes From Varroa destructor‐Resistant and Susceptible Colonies	2
Heterotrophic bacteria trigger transcriptome remodelling in the photosynthetic picoeukaryote Micromonas commoda	2
Recovery of culturable Streptococcus pyogenes from swabs stored at different temperatures	2
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Detection of Klebsiella pneumoniae in healthy poultry: Insights and perspectives from culturing and metagenomics	2
Studying the microbiome of suppressive soils against vascular wilt, caused by Fusarium oxysporum in cape gooseberry (Physalis peruviana)	2
Diversity of soil fungi and entomopathogenic fungi in subtropical mountain forest in southwest China	2
Methodological ‘lenses’ influence the characterization of phytoplankton dynamics in a coastal upwelling ecosystem	2
Bioprospecting Microbial Consortia for Tebuthiuron Degradation in Agricultural Soils: An Alternative Bayesian‐Driven Colorimetric Protocol	2
The use of different 16S rRNA gene variable regions in biogeographical studies	2
Stressful, isolated, yet diverse: Green roofs have rich microbiomes that are not dominated by oligotrophic taxa	2
Optimisation of Laccase Activity From Bacillus atrophaeus Using Response Surface Methodology: A Proof‐Of‐Concept Dye Decolourisation Study	2
Root inoculation with soil‐borne microorganisms alters gut bacterial communities and performance of the leaf‐chewer Spodoptera exigua	2
Kinetics and pathways of sub‐lithic microbial community (hypolithon) development	2
Phenyl Acid Induced Inhibition of Methanogenesis in CO2 Reducing Organisms	2
Pectobacterium versatile β‐Lactamase Contributes to Soft Rot Pectobacteriaceae (SRP) Community Diversity During Potato Infection	2
Micromonas, a small pigmented flagellate, predominates the nanoflagellate and photosynthetic picoeukaryote communities in the northern South China Sea	2
A Novel Pathosystem With the Model Plant Arabidopsis thaliana for Defining the Molecular Basis of Taphrina Infections	2
Farming System and Nematodes Affect the Rhizosphere Microbiome of Tropical Banana Plants	2
Investigating the resistome of haemolytic bacteria in Arctic soils	1
The Harmful Cyanobacterium Microcystis aeruginosa Differently Affects the Growth Rate and Photosynthetic Efficiency of Several Species of Marine Phytoplankton	1
Temperature Requirements Can Affect the Microbial Composition Causing Sour Rot in Grapes	1
Comparative metabolic profiling of the mycelium and fermentation broth of Penicillium restrictum from Peucedanum praeruptorum rhizosphere	1