Environmental Microbiology Reports

Article	Citations
Predation of antibiotic persister bacteria by the predatory bacteriumBdellovibrio bacteriovorus	191
Structure of Aspergillus flavus populations associated with maize in Greece, Spain, and Serbia: Implications for aflatoxin biocontrol on a regional scale	58
Direct Evidence of Microbial Sunscreen Production by Scum‐Forming Cyanobacteria in the Baltic Sea	51
Microbial Communities in Agave Fermentations Vary by Local Biogeographic Regions	35
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The contribution of beneficial wheat seed fungal communities beyond disease‐causing fungi: Advancing heritable mycobiome‐based plant breeding	32
Bacterial community and cyanotoxin gene distribution of the Winam Gulf, Lake Victoria, Kenya	30
Mutualistic relationship between Nitrospira and concomitant heterotrophs	25
Nectar compounds impact bacterial and fungal growth and shift community dynamics in a nectar analog	24
Carbon dioxide fixation by microbes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	24
Issue Information	22
Microbial rhodopsins are increasingly favoured over chlorophyll in High Nutrient Low Chlorophyll waters	22
Plant species‐dependent transmission of Escherichia coli O157:H7 from the spermosphere to cotyledons and first leaves	20
The use of different 16S rRNA gene variable regions in biogeographical studies	19
Reduction, evolutionary pattern and positive selection of genes encoding formate dehydrogenase in Wood–Ljungdahl pathway of gastrointestinal acetogens suggests their adaptation to formate‐r	19
Polyfluorinated compound biodegradation: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	18
Soil microbiomes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	17
The assessment of microbial ecology: a special emphasis on the Indian scenario	16
Rumen protozoa are a hub for diverse hydrogenotrophic functions	15
Acid stress in microbes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	15
Who is in the driver's seat? Parvimonas micra: An understudied pathobiont at the crossroads of dysbiotic disease and cancer	15
The growth‐survival trade‐off is hard‐wired in the Lactococcus lactis gene regulation network	14
Metagenomes of engineered environments: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	14
Pressure‐dependent growth controls 3D architecture of Pseudomonas putida microcolonies	14
Broad time‐dependent transcriptional activity of metabolic genes of E. coli O104:H4 strain C227/11Φcu in a soil microenvironment at low temperature	14

Genome‐scale metabolic modelling of extremophiles and its applications in astrobiological environments	14
Microbial community metabolism	14
Differential requirement for RecFOR pathway components in Thermus thermophilus	13
Combatting biofilms in potable water systems: A comprehensive overview to ensuring industrial water safety	13
Heterotrophic bacteria trigger transcriptome remodelling in the photosynthetic picoeukaryote Micromonas commoda	13
High‐throughput sequencing reveals soil bacterial community structure and their interactions with environmental factors of the grassland fairy ring	13
Tolerance to environmental pollution in the freshwater crustacean Asellus aquaticus: A role for the microbiome	13
Metagenomic and metatranscriptomic analysis reveals enrichment for xenobiotic‐degrading bacterial specialists and xenobiotic‐degrading genes in a Canadian Prairie two‐cell	12
High calcium and strontium uptake by the green microalgaTetraselmis chuiis related to micropearl formation and cell growth	12
Small RNAs in the Antarctic bacterium Pseudomonas extremaustralis responsive to oxygen availability and oxidative stress	12
The Lon protease negatively regulates pyoluteorin biosynthesis through the Gac/Rsm‐RsmE cascade and directly degrades the transcriptional activator PltR in Pseudomonas protege	12
Molecular and metabolic characteristics of wastewater associated Escherichia coli strains	12
Antibiotic resistance in mucosal bacteria from high Arctic migratory salmonids	12
Microbial diversity and adaptive strategies in the Mars‐like Qaidam Basin, North Tibetan Plateau, China	12
Distribution of the N2‐fixing cyanobacterium Candidatus Atelocyanobacterium thalassa in the Mexican Pacific upwelling system under two contrasting El Niño Southern Oscilla	11
Denitrification in low oxic environments increases the accumulation of nitrogen oxide intermediates and modulates the evolutionary potential of microbial populations	11
Feeding strategy and feed protein level affect the gut microbiota of common carp (Cyprinus carpio)	10
Characterisation of meropenem‐resistant Bacillus sp. FW 1 isolated from biogas digestate	10
Niche differentiation of atmospheric methane‐oxidizing bacteria and their community assembly in subsurface karst caves	10
Bacteriophage therapeutics to confront multidrug‐resistant Acinetobacter baumannii ‐ a global health menace	10
Bacillus velezensisSQR9 promotes plant growth through colonization and rhizosphere–phyllosphere bacteria interaction	10
Complete genome assembly of the levan‐positive strain PVFi1 of Pseudomonas savastanoi pv. savastanoi isolated from olive knots in Central Italy	10
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Electrochemical Detection of Carbon Steel Corrosion Induced by Fermentative Bacteria From Natural Gas Transmission Lines	9
Metatranscriptomic shifts suggest shared biodegradation pathways for Corexit 9500 components and crude oil in Arctic seawater	9
Pyricularia oryzae enhances Streptomyces griseus growth via non‐volatile alkaline metabolites	9
Bacterial Communities From Two Freshwater Aquaculture Systems in Northern Germany	9
Issue Information	9
Recovery of culturable Streptococcus pyogenes from swabs stored at different temperatures	9
Characterisation of the growth behaviour of Listeria monocytogenes in Listeria synthetic media	9
Prevalence, Distribution and Antimicrobial Susceptibility of Enterobacteriaceae and Non‐Fermenting Gram‐Negative Bacilli Isolated From Environmental Samples in a Veterinary Clinical Hospital in	9
Recovery of clinically relevant multidrug‐resistant Klebsiella pneumoniae lineages from wastewater in Kumasi Metropolis, Ghana	9
Seasonal dynamics of bacterial community structure and function in the surf zone seawater of a recreational beach in Ostend, Belgium	9
Acidophilic methanotrophs: Occurrence, diversity, and possible bioremediation applications	9
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Influence of growth medium on the species‐specific interactions between algae and bacteria	8
What do we mean by viability in terms of ‘viable but non‐culturable’ cells?	8
Retention of microplastics by biofilms and their ingestion by protists in rivers	8
Explorative characterization and taxonomy‐aligned comparison of alterations in lipids and other biomolecules in Antarctic bacteria grown at different temperatures	8
Seasonal and interannual variability of the free‐living and particle‐associated bacteria of a coastal microbiome	8
Investigating the antimicrobial and antibiofilm properties of marine halophilic Bacillus species against ESKAPE pathogens	8
Unique episymbiotic relationship between Candidatus Patescibacteria and Zoogloea in activated sludge flocs at a municipal wastewater treatment plant	8
Microbial communities reveal niche partitioning across the slope and bottom zones of the challenger deep	8
Bacterial rather than fungal diversity and community assembly drive soil multifunctionality in a subtropical forest ecosystem	7
Coupling methanogenesis with iron reduction by acetotrophic Methanosarcina mazei zm‐15	7
Global 16S rRNA diversity of provannid snail endosymbionts from Indo‐Pacific deep‐sea hydrothermal vents	7
Effect of temperature on in vitro germination and growth of Colletotrichum fioriniae, a new emerging pathogen of olive fruits	7
Exploring plastic biofilm formation and Escherichia coli colonisation in marine environments	7
Changes in soil microbial communities after exposure to neonicotinoids: A systematic review	7

Melanin protects Cryptococcus neoformans from spaceflight effects	7
Corrigendum	7
Diversity and putative interactions of parasitic alveolates belonging to Syndiniales at a coastal Pacific site	6
Microbial perspective of inhibited carbon turnover in Tangel humus of the Northern Limestone Alps	6
The influence of tree genus, phylogeny, and richness on the specificity, rarity, and diversity of ectomycorrhizal fungi	6
Seasonal variation in metabolic profiles and microbial communities in a subarctic ore processing plant	6
Microorganism community structure: A characterisation of agrosystems from Madeira Archipelago	6
Effects of ectomycorrhizal fungus bolete identity on the community assemblages of endofungal bacteria	6
Issue Information	6
Detection of Klebsiella pneumoniae in healthy poultry: Insights and perspectives from culturing and metagenomics	6
Leafcutter ants enhance microbial drought resilience in tropical forest soil	6
Changes in microbial community structure of bio‐fouled polyolefins over a year‐long seawater incubation in Hawai'i	6
Cyanobacterial community composition and their functional shifts associated with biocrust succession in the Gurbantunggut Desert	6
A genome–proteome‐based approach for xylan degradation by Cohnella sp. AR92	6
Investigation of Suitable, Readily Available, Sources of Sulfate‐Reducing Bacteria Inoculum, and Evaluation of Sulfate Reduction Rates Achieved at Different pHs	6
Novel angular naphthopyrone formation by Arp1p dehydratase involved in Aspergillus fumigatus melanin biosynthesis	6
Sulfur cycling likely obscures dynamic biologically‐driven iron redox cycling in contemporary methane seep environments	6
First Insights Into the Biological and Physical–Chemical Diversity of Various Salt Ponds of Trapani, Sicily	6
Coupling the electrocatalytic dechlorination of 2,4‐D with electroactive microbial anodes	5
The interactions and hierarchical effects of long‐term agricultural stressors on soil bacterial communities	5
Effects of 5‐year experimental warming in the Alpine belt on soil Archaea: Multi‐omics approaches and prospects	5
Transcriptomic evidence for an energetically advantageous relationship between Syntrophomonas wolfei and Methanothrix soehngenii	5
Extracellular sulfite is protective against reactive oxygen species and antibiotic stress in Shewanella oneidensis MR‐1	5
Microbial seafood safety assessment following a marine mucilage disaster in the Sea of Marmara	5
Matrix‐producing cells formed ‘Van Gogh bundles’ facilitate Bacillus subtilis biofilm self‐healing	5
The microbial contribution to litter decomposition and plant growth	5
Isolation, characterisation and description of the roseoflavin producerStreptomyces berlinensissp. nov.	5
Continuous cultivation of the lithoautotrophic nitrate‐reducing Fe(II)‐oxidizing culture KS in a chemostat bioreactor	5
The plant host environment influences competitive interactions between bacterial pathogens	5
Issue Information	5
Alarming level of single or multidrug resistance in poultry environments‐associated extraintestinal pathogenic Escherichia coli pathotypes with potential to affect the One Health	5
Detection, fate and transport of the biohazardous agent Toxoplasma gondii in soil water systems: Influence of soil physicochemical properties, water chemistry and surfactant	5
Isolation of Acanthamoeba Species and Bacterial Symbiont Variability in Puna Salt Plains, Argentina	5
Type‐specific quantification of particulate methane monooxygenase gene of methane‐oxidizing bacteria at the oxic–anoxic interface of a surface paddy soil by digitalPCR	5
Discovery of a new bacterium, Microbacterium betulae sp. nov., in birch wood associated with hypersensitivity pneumonitis in woodworkers	4
Rapid detection of temperate bacteriophage using a simple motility assay	4
Gramicidin A is hydrolyzed by a d‐stereospecific peptidase produced by Bacillus anthracis	4
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Micromonas, a small pigmented flagellate, predominates the nanoflagellate and photosynthetic picoeukaryote communities in the northern South China Sea	4
Plankton and marine aggregates as transmission vectors for V. aestuarianus 02/041 infecting the pacific oyster Crassostrea gigas	4
Phagotrophy in the nitrogen‐fixing haptophyte Braarudosphaera bigelowii	4
Microbiome analysis in Lascaux Cave in relation to black stain alterations of rock surfaces and collembola	4
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Rapid formation of mature microbialites in Lake Alchichica, Mexico	4
Sources of protein diet differentially stimulate the gut and water microbiota under freshwater crayfish, marron (Cherax cainii, Austin 2002) culture	4
Issue Information	4
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Epigenetic insight into regulatory role of chromatin covalent modifications in lifecycle and virulence of Phytophthora	4
Construction of a versatile in vitro cultivation screening platform using human oral microbiota	4
The rootstock modifies the arbuscular mycorrhizal community of the root system, while the influence of the scion is limited in grapevines	4
Microbes controlling plant pathogens	4
Genomic adaptation of Burkholderia anthina to glyphosate uncovers a novel herbicide resistance mechanism	4
Tracing microbial communities associated with archaeological human samples in Latvia, 7–11th centuries AD	4
Inactivation of siderophore iron‐chelating moieties by the fungal wheat root symbiont Pyrenophora biseptata	4
Genome sequencing provides new insights on the distribution of Erwinia amylovora lineages in northern Italy	4
Drops join to make a stream: high‐throughput nanoscale cultivation to grasp the lettuce root microbiome	4
New problems of environmental ecology: ticks and tick‐borne pathogens in city parks of Ukraine	4
Anaerobic oxidation of methane mediated by microbial extracellular respiration	3
Herbivory shapes the rhizosphere bacterial microbiota in potato plants	3
Non‐selective microbiota reduction after the elicitation of a seaweed's immune response	3
Hiding in plain sight: The discovery of complete genomes of 11 hypothetical spindle‐shaped viruses that putatively infect mesophilic ammonia‐oxidizing archaea	3
Viability discrimination of bacterial microbiomes in home kitchen dish sponges using propidium monoazide treatment	3
Microbial community succession in steam‐sterilized greenhouses infected with Fusarium oxysporum	3
A novel, divergent alkane monooxygenase (alkB) clade involved in crude oil biodegradation	3
Quantitative proteomics provides an insight into germination‐related proteins in the obligate biotrophic plant pathogen Spongospora subterranea	3
Microbiomes in agroecosystem: Diversity, function and assembly mechanisms	3
Biogeographical Distribution of River Microbial Communities in Atlantic Catchments	3
Climate change and antibiotic resistance: A scoping review	3
Carbon metabolism and adaptation of hyperalkaliphilic microbes in serpentinizing spring of Manleluag, the Philippines	3
Influence of inoculum‐to‐substrate ratio on biomethane production via anaerobic digestion of biomass	3
AcrAB, the major RND‐type efflux pump of Photorhabdus laumondii, confers intrinsic multidrug‐resistance and contributes to virulence in insects	3
Activity and abundance of methanotrophic bacteria in a northern mountainous gradient of wetlands	3
Transinfected Wolbachia strains induce a complex of cytoplasmic incompatibility phenotypes: Roles of CI factor genes	3
Low microbial abundance and community diversity in the egg capsule of the oviparous cloudy catshark (Scyliorhinus torazame) during oviposition	3
Predicted metabolic roles and stress responses provide insights into candidate phyla Hydrogenedentota and Sumerlaeota as members of the rare biosphere in biofilms from various environments	3
Core taxa drive microeukaryotic community stability of a deep subtropical reservoir after complete mixing	3
The Quorum Sensing Regulated sRNA Lrs1 Is Involved in the Adaptation to Low Iron in Pseudomonas aeruginosa	3
Limited variation in microbial communities across populations of Macrosteles leafhoppers (Hemiptera: Cicadellidae)	3

Salmonella Heidelberg and Salmonella Minnesota in Brazilian broilers: Genomic characterization of third‐generation cephalosporin and fluoroquinolone‐resistant strains	3
Rooting for Success: The Role of Microorganisms in Promoting Growth and Resilience in Black Alder Seedlings	3
Persistent tissue‐specific resident microbiota in oysters across a broad geographical range	3
Succession and assembly mechanisms of seawater prokaryotic communities along an extremely wide salinity gradient	3
Exploration on the Cr(VI) resistance mechanism of a novel thermophilic Cr(VI)‐reducing bacteria Anoxybacillus flavithermusABF1 isolated from Tengchong geotherma	3
Regulation of nitrogen transformation and microbial community by inoculation during livestock manure composting	3
How dead is dead? Viable but non‐culturable versus persister cells	3
Issue Information	2
Metagenomic analysis of microbial consortia native to the Amazon, Highlands, and Galapagos regions of Ecuador with potential for wastewater remediation	2
Structure and composition of microbial communities in the water column from Southern Gulf of Mexico and detection of putative hydrocarbon‐degrading microorganisms	2
Cocaine esterase occurrence in global wastewater microbiomes and potential for biotransformation of novel psychoactive substances	2
Impairment of a cyanobacterial glycosyltransferase that modifies a pilin results in biofilm development	2
Unique bacterial communities and potential function along the vertical gradient in the deepest marine blue hole	2
Increased antibiotic resistance gene abundance linked to intensive bacterial competition in the phyllosphere across an elevational gradient	2
The root‐associated arbuscular mycorrhizal fungal assemblages of exotic alien plants are simplified in invaded distribution ranges, but dominant species are retained: A trans‐continental perspective	2
Gliding motility of a uranium‐tolerant Bacteroidetes bacterium Chryseobacterium sp. strain PMSZPI: insights into the architecture of spreading colonies	2
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Occurrence and phylogenetic analysis of Pseudanabaena sp. producing 2‐methylisoborneol in drinking water source of South Korea	2
Dehalococcoides mccartyi strain NIT01 grows more stably in vessels made of pure titanium rather than the stainless alloy SUS304	2
Paracoccus kondratievae produces poly(3‐hydroxybutyrate) under elevated temperature conditions	2
Aquaculture microbiology: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	2
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Metatranscriptomic outlook on green and brown food webs in acid mine drainage	2
Nutrients mediate caffeine inhibition of Escherichia coli	2
Assessment of the cyst wall and surface microbiota in dormant embryos of the Antarctic calanoid copepod, Boeckella poppei	2
Acetogenesis: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	2
The potential of bacterial microcompartment architectures for phytonanotechnology	2
Francisella novicida can utilize Paramecium bursaria as its potential host	2
Non‐ribosomal peptide biosynthetic potential of the nematode symbiont Photorhabdus	2
Investigating the infant gut microbiota in developing countries: worldwide metagenomic meta‐analysis involving infants living in sub‐urban areas of Côte d'Ivoire	2
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Dust sprinkling as an effective method for infecting layer chickens with wild‐type SalmonellaTyphimurium and changes in host gut microbiota	2
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To be or not to be a nonhost species: A case study of the Leptosphaeria maculans and Brassica carinata interaction	2
Microbes and climate change: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	2
1,8‐Dihydroxynaphthalene (DHN) melanin provides unequal protection to black fungi Knufia petricola and Cryomyces antarcticus from UV‐B radiation	2
Microbial diversity in the arid and semi‐arid soils of Botswana	2
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AHLS‐pred: a novel sequence‐based predictor of acyl‐homoserine‐lactone synthases using machine learning algorithms	2
The interaction of climate, plant, and soil factors drives putative soil fungal pathogen diversity and community structure in dry grasslands	2
Metagenomics indicate that public health risk may be higher from flooding following dry versus rainy periods	2
Issue Information	1
A new metabolic trait in an acetogen: Mixed acid fermentation of fructose in a methylene‐tetrahydrofolate reductase mutant of Acetobacterium woodii	1
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Interactions between Pseudomonas aeruginosa and six opportunistic pathogens cover a broad spectrum from mutualism to antagonism	1
Linking lifestyle and foraging strategies of marine bacteria: selfish behaviour of particle‐attached bacteria in the northern Adriatic Sea	1
CORRIGENDUM	1
Metagenomic airborne resistome from urban hot spots through the One Health lens	1
Diversity dynamics of aerobic anoxygenic phototrophic bacteria in a freshwater lake	1
Plastic and terrestrial organic matter degradation by the humic lake microbiome continues throughout the seasons	1
Comparative genomics reveals the emergence of copper resistance in a non‐pigmented Xanthomonas pathogen of grapevine	1
Utilization of lasso peptides for biodegradation of polycyclic aromatic hydrocarbons	1
Three‐domain microbial communities in the gut of Pachnoda marginata larvae: A comparative study revealing opposing trends in gut compartments	1
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Virulence factors of Salmonella spp. isolated from free‐living grass snakes Natrix natrix	1
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Deciphering microbial communities involved in marine steel corrosion using high‐throughput amplicon sequencing	1
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Prevalence of Heritable Symbionts in Parisian Bedbugs (Hemiptera: Cimicidae)	1
Microbial global transport: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	1
First report on the occurrence of Vibrio cholerae nonO1/nonO139 in natural and artificial lakes and ponds in Serbia: Evidence for a long‐distance transfer of strains and t	1
Disentangling soil microbiome functions by perturbation	1
Environmental microbiome in the home and daycare settings during the COVID‐19 pandemic, and potential risk of non‐communicable disease in children	1
Polysaccharide degradation by the Bacteroidetes: mechanisms and nomenclature	1
Bacterial symbionts of the precious coral Corallium rubrum are differentially distributed across colony‐specific compartments and differ among colormorphs	1
Zoonotic bacterial and parasitic intestinal pathogens in foxes, raccoons and other predators from eastern Germany	1
Unique phage–bacterium interplay in sponge holobionts from the southern Okinawa Trough hydrothermal vent	1
The microbiome of the lichen Lobaria pulmonaria varies according to climate on a subcontinental scale	1
Conserved infections and reproductive phenotypes of Wolbachia symbionts in Asian tortrix moths	1
Multiple plant hormone catabolism activities: an adaptation to a plant‐associated lifestyle by Achromobacter spp.	1
Effect of magnetite addition on transcriptional profiles of syntrophic Bacteria and Archaea during anaerobic digestion of propionate in wastewater sludge	1
Beauveria felina Accelerates Growth When Competing With Other Potential Endophytes	1
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Cereal leaf beetle‐associated bacteria enhance the survival of their host upon insecticide treatments and respond differently to insecticides with different modes of action	1
Fungal microbiomes associated with Lycopodiaceae during ecological succession	1
Microbes and hydrothermal environments: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	1
The rhizosphere of a drought‐tolerant plant species in Morocco: A refuge of high microbial diversity with no taxon preference	1
2‐Methylhopanoids in geographically distinct, arid biological soil crusts are primarily cyanobacterial in origin	1
Population structure and pathogen interaction of Escherichia coli in freshwater: Implications of land‐use for water quality and public health in Aotearoa New Zealand	1
Thermodynamics shapes the biogeography of propionate‐oxidizing syntrophs in paddy field soils	1
Characterization of BbKlf1 as a novel transcription factor vital for asexual and infection cycles of Beauveria bassiana	1
Seed or soil: Tracing back the plant mycobiota primary sources	1
Distinct oxygen isotope fractionations driven by different electron donors during microbial nitrate reduction in lake sediments	1
Trophic interrelationships of bacteria are important for shaping soil protist communities	1
Bacterial endophytic community composition varies by hemp cultivar in commercially sourced seed	1
Kinetics and pathways of sub‐lithic microbial community (hypolithon) development	1
Influence of reef habitat on coral microbial associations	1
Symbioses of alvinocaridid shrimps from the South West Pacific: No chemosymbiotic diets but conserved gut microbiomes	1
Copper resistance in the cold: Genome analysis and characterisation of a PIB‐1 ATPase in Bizionia argentinensis	1
A preliminary survey of the cellular responses of the black fungus Cryomyces antarcticus to long and short‐term dehydration	1