Environmental Microbiology Reports

Article	Citations
Identifying Potential Geochemical and Microbial Impacts of Hydrogen Storage in a Deep Saline Aquifer	73
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Feeding strategy and feed protein level affect the gut microbiota of common carp (Cyprinus carpio)	42
Microbial communities reveal niche partitioning across the slope and bottom zones of the challenger deep	41
Microbial Communities in Agave Fermentations Vary by Local Biogeographic Regions	25
Prevalence, Distribution and Antimicrobial Susceptibility of Enterobacteriaceae and Non‐Fermenting Gram‐Negative Bacilli Isolated From Environmental Samples in a Veterinary Clinical Hospital in	24
Chromium‐Tanned Leather and Microbial Consortia: Identification of Taxa With Biodegradation Potential and Chromium Tolerance	22
Seasonal and interannual variability of the free‐living and particle‐associated bacteria of a coastal microbiome	21
Environmental Microbiome of Tyrophagus Putrescentiae Culture and Its Changes in Manipulative Experiments	18
Pressure‐dependent growth controls 3D architecture of Pseudomonas putida microcolonies	18
Issue Information	17
Global 16S rRNA diversity of provannid snail endosymbionts from Indo‐Pacific deep‐sea hydrothermal vents	17
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Microorganism community structure: A characterisation of agrosystems from Madeira Archipelago	17
Tolerance to environmental pollution in the freshwater crustacean Asellus aquaticus: A role for the microbiome	17
Activity and abundance of methanotrophic bacteria in a northern mountainous gradient of wetlands	16
A genome–proteome‐based approach for xylan degradation by Cohnella sp. AR92	16
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Issue Information	16
Integrated Analysis of Gene Expression, Protein Synthesis, and Epigenetic Modifications in Alcanivorax borkumensis SK2 Under Iron Limitation	16
Succession and assembly mechanisms of seawater prokaryotic communities along an extremely wide salinity gradient	16
A novel, divergent alkane monooxygenase (alkB) clade involved in crude oil biodegradation	15
Issue Information	15
Carbon metabolism and adaptation of hyperalkaliphilic microbes in serpentinizing spring of Manleluag, the Philippines	15
Regulation of nitrogen transformation and microbial community by inoculation during livestock manure composting	15

Community‐Engaged Course‐Based Undergraduate Research of Multidrug Resistance in Escherichia coli in Water Near Dairy and Hog Farms in Michigan	15
Rooting for Success: The Role of Microorganisms in Promoting Growth and Resilience in Black Alder Seedlings	14
Microbiomes in agroecosystem: Diversity, function and assembly mechanisms	13
Microbiome Dynamics in Early Life Stages of the Precious Mediterranean Red Coral Corallium rubrum	13
Isolation of Acanthamoeba Species and Bacterial Symbiont Variability in Puna Salt Plains, Argentina	13
Issue Information	13
Sulfur cycling likely obscures dynamic biologically‐driven iron redox cycling in contemporary methane seep environments	13
Issue Information	12
Bacterial endophytic community composition varies by hemp cultivar in commercially sourced seed	12
More Than a Stick in the Mud: Eelgrass Leaf and Root Bacterial Communities Are Distinct From Those on Physical Mimics	12
Dust sprinkling as an effective method for infecting layer chickens with wild‐type SalmonellaTyphimurium and changes in host gut microbiota	12
Paracoccus kondratievae produces poly(3‐hydroxybutyrate) under elevated temperature conditions	12
Population structure and pathogen interaction of Escherichia coli in freshwater: Implications of land‐use for water quality and public health in Aotearoa New Zealand	11
Unveiling Short‐Scale Responses: How Pico‐ and Nanoeukaryotic Plankton Navigate Environmental Variability in a Coastal Upwelling System	11
Issue Information	11
Unravelling Intrinsic and Extrinsic Factors Shaping the Rich Communities on Lizard Skin	11
A new metabolic trait in an acetogen: Mixed acid fermentation of fructose in a methylene‐tetrahydrofolate reductase mutant of Acetobacterium woodii	11
Year‐Round Quantification, Structure and Dynamics of Epibacterial Communities From Diverse Macroalgae Reveal a Persistent Core Microbiota and Strong Host Specificities	11
Dehalococcoides mccartyi strain NIT01 grows more stably in vessels made of pure titanium rather than the stainless alloy SUS304	11
Issue Information	11
Metabolic versatility of aerobic methane‐oxidizing bacteria under anoxia in aquatic ecosystems	10
Whole‐cell studies of substrate and inhibitor specificity of isoprene monooxygenase and related enzymes	10
Conserved infections and reproductive phenotypes of Wolbachia symbionts in Asian tortrix moths	10
How do high phosphate concentrations affect soil microbial communities after a century of ecosystem self‐reclamation?	10
Synergistic mechanisms of humic acid and biomineralization in cadmium remediation using Lysinibacillus fusiformis	10
Trophic interrelationships of bacteria are important for shaping soil protist communities	10
Insights Into the Mondia Whitei Microbiome Across Geographic Regions in Eastern Africa	10
Issue Information	10
Symbioses of alvinocaridid shrimps from the South West Pacific: No chemosymbiotic diets but conserved gut microbiomes	10
Issue Information	10
Evidence of a putative CO2 delivery system to the chromatophore in the photosynthetic amoeba Paulinella	9
Seasonal Transition in the Dominance of Photoautotrophic and Heterotrophic Protists in the Photic Layer of a Subtropical Marine Ecosystem	9
Genome‐resolved metagenomics identifies novel active microbes in biogeochemical cycling within methanol‐enriched soil	9
Wolbachia in Antarctic terrestrial invertebrates: Absent or undiscovered?	9
Temporal and Spatial Survey on the Abundance of Amoebae and Bacteria in an Estuary and the Role of Environmental Parameters	9
Genome‐resolved metagenomics revealed novel microbial taxa with ancient metabolism from macroscopic microbial mat structures inhabiting anoxic deep reefs of a Maldivian Blue Hole	9
Isolation and Characterisation of Bacteria From an Extremely High Boron and Salinity‐Tolerant Puccinellia distans (Jacq.) Parl. Rhizosphere and Their Potential Impact on the Growth o	9
Issue Information	8
A quantitative sequencing method using synthetic internal standards including functional and phylogenetic marker genes	8
Issue Information	8
O‐acetylesterase activity of Bifidobacterium bifidum sialidase facilities the liberation of sialic acid and encourages the proliferation of sialic acid scavenging Bifidobacterium brev	8
New bacterial strains for ibuprofen biodegradation: Drug removal, transformation, and potential catabolic genes	8
Wolbachia modify host cell metabolite profiles in response to short‐term temperature stress	8
Global expansion of Vibrio spp. in hot water	8
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‘Candidatus Gromoviella agglomerans’, a novel intracellular Holosporaceae parasite of the ciliate Paramecium showing marked genome reduction	8
In silico analysis of diversity, specificity and molecular evolution of Stenotrophomonas phages	8
Withdrawn: The two‐component system RstAB regulates production of a polysaccharide capsule with a role in virulence in the marine pathogen Photobacterium damselae subsp. damselae<	8
Desert plants, arbuscular mycorrhizal fungi and associated bacteria: Exploring the diversity and role of symbiosis under drought	8
In it together: Candida–bacterial oral biofilms and therapeutic strategies	8

Influence of Plant Species and De‐Icing Salt on Microbial Communities in Bioretention	7
Acid stress in microbes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	7
The Effects of Humidity and Seasonality on Foliar and Root Mycobiomes of Betula pendula	7
The impacts of water quality on the amphibian chytrid fungal pathogen: A systematic review	7
Acidophilic sulphate‐reducing bacteria: Diversity, ecophysiology, and applications	7
Identification of ESBL‐Producing Enterobacterales From Vegetable Plants: Preliminary Findings From a Small Cross‐Sectional Study in a Rural Area of Madagascar	7
Seasonal Host Shifts for Legionella Within an Industrial Water‐Cooling System	7
Ecology and Pathogenicity for Honey Bee Brood of Recently Described Paenibacillus melissococcoides and Comparison With Paenibacillus dendritiformis, Paenibacillus thiaminolyticus	7
Carbon dioxide fixation by microbes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	7
Is the gut microbiome of insects a potential source to meet UN sustainable development goals to eliminate plastic pollution?	7
Microbiome Composition in a Common Mediterranean Bryozoan Following an Unprecedented Marine Heatwave	7
Increased Nutrient Levels Enhance Bacterial Exopolysaccharides Production in the Context of Algae	7
Unique episymbiotic relationship between Candidatus Patescibacteria and Zoogloea in activated sludge flocs at a municipal wastewater treatment plant	6
The contribution of beneficial wheat seed fungal communities beyond disease‐causing fungi: Advancing heritable mycobiome‐based plant breeding	6
Nitrogen Fixation Potential in Bathypelagic Sediment of the Ice‐Covered Arctic Ocean Revealed Through Long‐Term Stable Isotope Incubations	6
Microbes controlling plant pathogens	6
Novel angular naphthopyrone formation by Arp1p dehydratase involved in Aspergillus fumigatus melanin biosynthesis	6
The Functional Role of Fungi and Bacteria in Sulfur Cycling During Kelp (Ecklonia Radiata) Degradation: Unconventional Use of PiCrust2	6
Pyricularia oryzae enhances Streptomyces griseus growth via non‐volatile alkaline metabolites	6
Enhancing Biodiversity‐Function Relationships in Field Retting: Towards Key Microbial Indicators for Retting Control	6
Climate change and antibiotic resistance: A scoping review	6
The interactions and hierarchical effects of long‐term agricultural stressors on soil bacterial communities	6
Direct Evidence of Microbial Sunscreen Production by Scum‐Forming Cyanobacteria in the Baltic Sea	6
Small RNAs in the Antarctic bacterium Pseudomonas extremaustralis responsive to oxygen availability and oxidative stress	6
Urbanisation and Lockdown Impact on Airborne Fungal Communities in Tropical Landscapes: A Comparative Study of Urban and Peri‐Urban Environments	6
Differential requirement for RecFOR pathway components in Thermus thermophilus	6
Bacterial rather than fungal diversity and community assembly drive soil multifunctionality in a subtropical forest ecosystem	6
Effects of 5‐year experimental warming in the Alpine belt on soil Archaea: Multi‐omics approaches and prospects	6
Phagotrophy in the nitrogen‐fixing haptophyte Braarudosphaera bigelowii	6
Bacterial symbionts of the precious coral Corallium rubrum are differentially distributed across colony‐specific compartments and differ among colormorphs	5
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Transinfected Wolbachia strains induce a complex of cytoplasmic incompatibility phenotypes: Roles of CI factor genes	5
Persistent tissue‐specific resident microbiota in oysters across a broad geographical range	5
Microbes and hydrothermal environments: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	5
High‐affinity amide‐lanthanide adsorption to gram‐positive soil bacteria	5
Cereal leaf beetle‐associated bacteria enhance the survival of their host upon insecticide treatments and respond differently to insecticides with different modes of action	5
Subtle changes in topsoil microbial communities of drained forested peatlands after prolonged drought	5
Utilization of lasso peptides for biodegradation of polycyclic aromatic hydrocarbons	5
Microbial diversity in the arid and semi‐arid soils of Botswana	5
CORRIGENDUM	5
Investigation of Suitable, Readily Available, Sources of Sulfate‐Reducing Bacteria Inoculum, and Evaluation of Sulfate Reduction Rates Achieved at Different pHs	5
Inactivation of siderophore iron‐chelating moieties by the fungal wheat root symbiont Pyrenophora biseptata	5
The potential of bacterial microcompartment architectures for phytonanotechnology	5
Nutrients mediate caffeine inhibition of Escherichia coli	5
At what cost? The impact of bacteriophage resistance on the growth kinetics and protein synthesis of Escherichia coli	5
Whole‐genome sequence analysis of Staphylococcus aureus from retail fish acknowledged the incidence of highly virulent ST672‐MRSA‐IVa/t1309, an emerging Indian clone, in Assam, India	5
Genomic Characterisation of Limosilactobacillus fermentum CRL2085 Unveiling Probiotic Traits for Application in Cattle Feed	5
Exploring Microbiological Dynamics in a Salt Cavern for Potential Hydrogen Storage Use	5
Genetic Drivers of Plant Root Colonisation by the Biocontrol Agent Pseudomonas protegensPf‐5	5
Discovery of a new bacterium, Microbacterium betulae sp. nov., in birch wood associated with hypersensitivity pneumonitis in woodworkers	5
Cocaine esterase occurrence in global wastewater microbiomes and potential for biotransformation of novel psychoactive substances	5
Overwintering Does Not Affect Microbiota Diversity in Halyomorpha halys: Implications for Its Ecology and Management	5
Phthalate hydrolase: distribution, diversity and molecular evolution	5
National‐scale distribution of protists associated with sorghum leaves and roots	5
Bioavailable Dissolved Organic Carbon Serves as a Key Regulator of Phosphorus Dynamics in Stream Biofilms	5
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Bacterial epiphyte and endophyte communities of seagrass Thalassia hemprichii: the impact of feed extract solution	4
Functional genome mining and taxono‐genomics reveal eco‐physiological traits and species distinctiveness of aromatic‐degrading Pseudomonas bharatica sp. nov.	4
Biotechnological Potential of a Novel Strain of Fusarium proliferatum, a Terrestrial Fungus Adapted to Marine Environment	4
The ‘microbiome counterattack’: Insights on the soil and root‐associated microbiome in diverse chickpea and lentil genotypes after an erratic rainfall event	4
Inducible Volatile Chemical Signalling Drives Antifungal Activity of Trichoderma hamatum GD12 During Confrontation With the Pathogen Sclerotinia sclerotiorum	4
Temporal and Depth‐Driven Variability of Pelagic Bacterial Communities in Lake Erie: Biofilm and Plankton Dynamics	4
The etherase system of Novosphingobium sp. MBES04 functions as a sensor of lignin fragments through phenylpropanone production to induce specific transcriptional responses	4
Halomonas alkaliantarctica as a platform for poly(3‐hydroxybutyrate‐co‐3‐hydroxyvalerate) production from biodiesel‐derived glycerol	4
The Digestive Microbiome Diversity of the Least Killifish, Heterandria formosa, and Its Implications for Host Adaptability to Varying Trophic Levels	4
Surveillance of influenza A and B viruses from community and hospital wastewater treatment plants	4
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Plastic‐Microbial BioRemediation DB: A Curated Database for Multi‐Omics Applications	4
Niche selection in bacterioplankton: A study of taxonomic composition and single‐cell characteristics in an acidic reservoir	4
Efficiency and specificity ofCARD‐FISHprobes in detection of marine vibrios	4
Strategies of organic phosphorus recycling by soil bacteria: acquisition, metabolism, and regulation	4
On the Difficulty to Detect Carbapenem Resistance in the Environment: Characterisation of Escherichia coli With Reduced Carbapenem Susceptibility Isolated in a French River	4
HSP104 and HSP20‐L Are Required by Aspergillus nidulans in Response to Attack by Fungivorous Springtail Sinella curviseta	4
Effects of different short‐term tillage managements on rhizosphere soil autotrophic CO2‐fixing bacteria in a double‐cropping rice paddy field	4
Zoonotic bacterial and parasitic intestinal pathogens in foxes, raccoons and other predators from eastern Germany	4
Light‐dependent niche differentiation in two mixotrophic bacterivores	4
Microbial diversity and associated metabolic potential in the supraglacial habitat of a fast‐retreating glacier: a case study of Patsio glacier, North‐western Himalaya	4
Microbial community metabolism	4
Physiological response mechanism of heavy metal‐resistant endophytic fungi isolated from the roots of Polygonatum kingianum	4
Comparative analysis of enzymatic profiles and biofilm formation in clinical and environmental Candida kefyr isolates	4

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Metagenomic airborne resistome from urban hot spots through the One Health lens	4
Bacteria on the foundational kelp in kelp forest ecosystems: Insights from culturing, whole genome sequencing and metabolic assays	4
The Effect of Larval Exposure to Plastic Pollution on the Gut Microbiota of the Major Malaria Vector Anopheles arabiensis Patton (Diptera: Culicidae)	4
Environmental processes and health implications potentially mediated by dust‐borne bacteria	4
Potential for homoacetogenesis via the Wood–Ljungdahl pathway in Korarchaeia lineages from marine hydrothermal vents	4
How do phytophagous insects affect phyllosphere fungi? Tracking fungi from milkweed to monarch caterpillar frass reveals communities dominated by fungal yeast	4
In vitro interactions between Bradyrhizobium spp. and Tuber magnatum mycelium	4
Strengthen or Weaken: Evolutionary Directions of Cross‐Feeding After Formation	4