Genome Biology and Evolution

Article	Citations
Mitonuclear Coevolution in Bumblebees (Bombus): Genomic Signatures and Its Role in Climatic Niche Adaptation	120
OrthoPhy: A Program to Construct Ortholog Data Sets Using Taxonomic Information	117
Genome Evolution and Introgression in the New Zealand mud Snails Potamopyrgus estuarinus and Potamopyrgus kaitunuparaoa	70
Diversity of Sex Chromosomes in Vertebrates: Six Novel Sex Chromosomes in Basal Haplochromines (Teleostei: Cichlidae)	60
Exploring the Natural Origins of SARS-CoV-2 in the Light of Recombination	53
Comprehensive Phylogenomics of Methylobacterium Reveals Four Evolutionary Distinct Groups and Underappreciated Phyllosphere Diversity	50
“Correcting” Gene Trees to be More Like Species Trees Frequently Increases Topological Error	46
Palaeognaths Reveal Evolutionary Ancestry of the Avian Major Histocompatibility Complex Class II	44
Impact of Phylogenetic Method Choice on Indel Analyses in HIV-1 Subtype B	44
High Polymorphism Levels of De Novo ORFs in a Yoruba Human Population	43
Genealogical Analyses of 3 Cultivated and 1 Wild Specimen of Vitis vinifera from Greece	38
Genomic Resources and Annotations for a Colonial Ascidian, the Light-Bulb Sea Squirt Clavelina lepadiformis	37
Filtration of Gene Trees From 9,000 Exons, Introns, and UCEs Disentangles Conflicting Phylogenomic Relationships in Tree Frogs (Hylidae)	35
Myxozoans (Cnidaria) do not Retain Key Oxygen-Sensing and Homeostasis Toolkit Genes	34
Highlight: Gene Cluster Reshuffling Drives Natural Sunscreen Evolution in Lichens	33
Multiple Domestication Centers of the Indian Pig Population	33
Correction to: Genome-Scale Data Reveal Deep Lineage Divergence and a Complex Demographic History in the Texas Horned Lizard (Phrynosoma cornutum) throughout the Southwestern and Central United	33
Nuclear and Mitochondrial Genome Assemblies for the Endangered Wood-Decaying Fungus Somion occarium	33
Genetic Analysis of Mingrelians Reveals Long-Term Continuity of Populations in Western Georgia (Caucasus)	31
The Nitroplast and Its Relatives Support a Universal Model of Features Predicting Gene Retention in Endosymbiont and Organelle Genomes	30
Discovery of New Genomic Configuration of Mating-Type Loci in the Largest Lineage of Lichen-Forming Fungi	30
Cis-regulatory Variation in Relation to Sex and Sexual Dimorphism in Drosophila melanogaster	29
Does Effective Population Size Govern Evolutionary Differences in Telomere Length?	29
Divergence in theSaccharomycesSpecies’ Heat Shock Response Is Indicative of Their Thermal Tolerance	29
Whole-Genome Sequences of Two Kazachstania barnettii Strains Isolated from Anthropic Environments	29

Technological Development and Advances for Constructing and Analyzing Plant Pangenomes	27
Ancient Sheep Genomes Reveal Four Millennia of North European Short-Tailed Sheep in the Baltic Sea Region	27
Ohnologs and SSD Paralogs Differ in Genomic and Expression Features Related to Dosage Constraints	26
Egg Yolk Protein Homologs Identified in Live-Bearing Sharks: Co-Opted in the Lecithotrophy-to-Matrotrophy Shift?	26
A Simulation Framework for Modeling the Within-Patient Evolutionary Dynamics of SARS-CoV-2	26
Calling Structural Variants with Confidence from Short-Read Data in Wild Bird Populations	25
Evolution of the Growth Hormone Gene Duplication in Passerine Birds	25
Evolution of Plant Conserved microRNAs After Whole-Genome Duplications	25
Highlight: Epigenetics HelpHydraGet Ahead	25
Population Genomics of Japanese Macaques (Macaca fuscata): Insights Into Deep Population Divergence and Multiple Merging Histories	25
Analyses of Transposable Elements in Arbuscular Mycorrhizal Fungi Support Evolutionary Parallels With Filamentous Plant Pathogens	25
Highlight: Tardigrades and the Science of Extreme Survival	24
Editor's Note on: Can a Y chromosome degenerate in an evolutionary instant? A commentary on Fong et al. 2023	24
Genome Dynamics and Temperature Adaptation During Experimental Evolution of Obligate Intracellular Bacteria	23
New Genome Assemblies for Poeciliidae: A Foundation for Adaptation Studies	23
Genetic Signatures of Positive Selection in Human Populations Adapted to High Altitude in Papua New Guinea	23
Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826T, a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer	23
Genomic Insights into Fertilization: Tracing PLCZ1 Orthologs Across Amphibian Lineages	23
Population Genetics of Reproductive Genes in Haplodiploid Species	22
T Residues Preceded by Runs of G Are Hotspots of T→G Mutation in Bacteria	22
Chromosome-Level Genome Assembly of the Viviparous Eelpout Zoarces viviparus	22
Fine-Scale Map Reveals Highly Variable Recombination Rates Associated with Genomic Features in the Eurasian Blackcap	21
Complete Genome Sequencing of a NovelGloeobacterSpecies from a Waterfall Cave in Mexico	21
A Chromosome-Level Genome Assembly ofToona ciliata(Meliaceae)	21
On the Origin and Evolution of Microbial Mercury Methylation	21
Genetic Drift and Host-Adaptive Features Likely Underlie the Cladogenesis of Insect-Associated Lachnospiraceae	21
Corrigendum to: Intraspecific Transcriptome Variation and Sex-Biased Expression in Anopheles Arabiensis	21
Highlight: Unraveling the Origins of LUCA and LECA on the Tree of Life	20
Selection on the Fly: Short-Term Adaptation to an Altered Sexual Selection Regime inDrosophila pseudoobscura	20
Chromosome-Scale Genomes of the Flightless Caterpillar Hunter Beetles Calosoma tepidum and Calosoma wilkesii From British Columbia (Coleoptera: Carabidae)	20
De Novo Genome Assemblies From Two Indigenous Americans from Arizona Identify New Polymorphisms in Non-Reference Sequences	20
Global Emergence and Dissemination of Neisseria gonorrhoeae ST-9363 Isolates with Reduced Susceptibility to Azithromycin	20
Alternative Mutational Architectures Producing Identical M-Matrices can Lead to Different Patterns of Evolutionary Divergence	20
The Structure of Simple Satellite Variation in the Human Genome and Its Correlation With Centromere Ancestry	20
ZW Sex Chromosome Differentiation in Palaeognathous Birds Is Associated with Mitochondrial Effective Population Size but Not Mitochondrial Genome Size or Mutation Rate	20
Convergent Evolution and Predictability of Gene Copy Numbers Associated with Diets in Mammals	20
Highlight: The Surprising Endurance of DNA's Smallest Repeats	20
It Took Me a While to Figure out What Science I Really Wanted to Do	20
The Evolution and Characterization of the RNA Interference Pathways in Lophotrochozoa	19
Evolution of an Alternative Genetic Code in the Providencia Symbiont of the Hematophagous Leech Haementeria acuecueyetzin	19
Genomic Adaptations to an Endoparasitic Lifestyle in the Morphologically Atypical CrustaceanSacculina carcini(Cirripedia: Rhizocephala)	19
Genome-wide Evidence of Host Specialization in Wild and Farmland Populations of the Fungal Leaf Spot Pathogen, Cercospora beticola	18
ORFans in Mitochondrial Genomes of Marine Polychaete Polydora	18
Phylogenomic analysis of deep-branching telonemid	18
Examining the Effects of Hibernation on Germline Mutation Rates in Grizzly Bears	18
Haplotype-Resolved, Chromosome-Level Assembly of White Clover (Trifolium repens L., Fabaceae)	18
A High Frequency of Chromosomal Duplications in Unicellular Algae Is Compensated by Translational Regulation	18
Identification of Y-chromosome Turnover in Newts Fails to Support a Sex Chromosome Origin for the Triturus Balanced Lethal System	18
Comparative Analysis of Transposable Element Evolution in Crustaceans	18
Parameter Scaling in Population Genetics Simulations may Introduce Unintended Background Selection: Considerations for Scaled Simulation Design	18

Extensive Recombination-driven Coronavirus Diversification Expands the Pool of Potential Pandemic Pathogens	18
Genomic Data Reveal Diverse Biological Characteristics of Scleractinian Corals and Promote Effective Coral Reef Conservation	18
Characterization of Single-Cell Cis-regulatory Elements Informs Implications for Cell Differentiation	17
Ubiquity and Origins of Structural Maintenance of Chromosomes (SMC) Proteins in Eukaryotes	17
Emilia Huerta-Sanchez	17
Genomic Sequence and Transcriptome Analysis of the Medicinal Fungus Keithomyces neogunnii	17
Chromosome-Level Assemblies of Three Candidatus Liberibacter solanacearum Vectors: Dyspersa apicalis (Förster, 1848), Dyspersa pallida (Burckhardt, 1986), and Trioza urticae	17
A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern	17
Nanopore Sequencing of Amoebophrya Species Reveals Novel Collection of Bacteria Putatively Associated With Karlodinium veneficum	17
Challenges in Assembling the Dated Tree of Life	17
Impact of Heat Stress on Transposable Element Expression and Derived Small RNAs in Drosophila subobscura	17
Exploring the Relationship Between Gene Expression and Low-Frequency Somatic Mutations in Arabidopsis with Duplex Sequencing	17
Extensive Loss and Gain of Conserved Noncoding Elements During Early Teleost Evolution	17
Convergent Evolution Has Led to the Loss of Claw Proteins in Snakes and Worm Lizards	17
Evolution of Transient Receptor Potential (TRP) Ion Channels in Antarctic Fishes (Cryonotothenioidea) and Identification of Putative Thermosensors	17
Signatures of Selection on Mitonuclear Integrated Genes Uncover Hidden Mitogenomic Variation in Fur Seals	16
Where Are the Formerly Y-linked Genes in the Ryukyu Spiny Rat that has Lost its Y Chromosome?	16
Cytogenetic Analysis of the Fish Genus Carassius Indicates Divergence, Fission, and Segmental Duplication as Drivers of Tandem Repeat and Microchromosome Evolution	16
Linked-Read Sequencing of Eight Falcons Reveals a Unique Genomic Architecture in Flux	16
Nonsystematic Reporting Biases of the SARS-CoV-2 Variant Mu Could Impact Our Understanding of the Epidemiological Dynamics of Emerging Variants	16
High Stability of the Epigenome inDrosophilaInterspecific Hybrids	16
Comparative Population Genomics of Cryptic Speciation and Adaptive Divergence in Bicknell’s and Gray-Cheeked Thrushes (Aves:Catharus bicknelliandCatharus minimus)	16
Conserved Noncoding Elements Evolve Around the Same Genes Throughout Metazoan Evolution	16
Lessons from Extremophiles: Functional Adaptations and Genomic Innovations across the Eukaryotic Tree of Life	15
The Genome Sequence of the Hemlock Woolly Adelgid, Adelges tsugae Annand 1924	15
Genomic Signatures of a Major Adaptive Event in the Pathogenic Fungus Melampsora larici-populina	15
Discovery of Paralogous GnRH and Corazonin Signaling Systems in an Invertebrate Chordate	15
The Birth-and-Death Evolution of Cytochrome P450 Genes in Bees	15
Evolutionary Genomics of Sister Species Differing in Effective Population Sizes and Recombination Rates	15
Chromosome-Scale Genome Assembly and Annotation of Allotetraploid Annual Bluegrass (Poa annua L.)	15
Unveiling the Virome of Wild Birds: Exploring CRESS-DNA Viral Dark Matter	15
Paralogous Gene Recruitment in Multiple Families Constitutes Genetic Architecture and Robustness of Pod Dehiscence in Legumes	15
Diverse Gene Regulatory Mechanisms Alter Rattlesnake Venom Gene Expression at Fine Evolutionary Scales	14
Size Matters: Genome Size Dynamics Driven by Copy Number Variation in a Green Alga	14
Accurate Detection of Convergent Mutations in Large Protein Alignments With ConDor	14
Can a Y Chromosome Degenerate in an Evolutionary Instant? A Commentary on Fong et al. 2023	14
Inferring the Selective History of CNVs Using a Maximum Likelihood Model	14
Highlight: Microbial Manipulators of Insect Sexual Reproduction	14
Low Mutation Rate and Atypical Mutation Spectrum in Prasinoderma coloniale: Insights From an Early Diverging Green Lineage	14
The Impact of Sample Size and Population History on Observed Mutational Spectra: A Case Study in Human and Chimpanzee Populations	14
Genome-Wide Demographic Analyses of Balaenid Whales Revealed Complex History of Gene Flow Associated with Past Climate Oscillation	14
Adaptive Potential of Epigenetic Switching During Adaptation to Fluctuating Environments	14
Cell Compartment is a Predictor of Protein Rate of Evolution, but not in the Manner Expected: Evidence Against the Extended Complexity Hypothesis	14
Arthropod Phylotranscriptomics With a Special Focus on the Basal Phylogeny of the Myriapoda	14
The Effect of Methodological Considerations on the Construction of Gene-Based Plant Pan-genomes	13
Genome-Scale Analysis Reveals Extensive Diversification of Voltage-Gated K+ Channels in Stem Cnidarians	13
Selection and Gene Duplication Associated With High-Elevation Diversification in Pristimantis, the Largest Terrestrial Vertebrate Genus	13
The Effect of the Presence and Absence of DNA Repair Genes on the Rate and Pattern of Mutation in Bacteria	13
Conserved Genes in Highly Regenerative Metazoans Are Associated with Planarian Regeneration	13
Epigenetic and Genetic Differentiation Between Coregonus Species Pairs	13
Sexual Antagonism and Sex Determination in Three Syngnathid Species Alongside a Male Pregnancy Gradient	13
High-Resolution Estimates of Crossover and Noncrossover Recombination from a Captive Baboon Colony	13
Mitogenomics and mitochondrial gene phylogeny decipher the evolution ofSaccharomycotinayeasts	13
Small but Mitey: A Gapless Telomere-to-Telomere Assembly of an Unidentified Mite With a Streamlined Genome	13
Population Genomics of Giant Mice from the Faroe Islands: Hybridization, Colonization, and a Novel Challenge to Identifying Genomic Targets of Selection	13
Opportunistic Bacteria of Grapevine Crown Galls Are Equipped with the Genomic Repertoire for Opine Utilization	13
Discovering Intron Gain Events in Humans Through Large-Scale Evolutionary Comparisons	13
Elucidating the Molecular Mechanisms of Sex Ratio Distortion Mediated by Cytoplasmic Symbionts	13
Draft Genome of Akame (Lates Japonicus) Reveals Possible Genetic Mechanisms for Long-Term Persistence and Adaptive Evolution with Low Genetic Diversity	13
Novel High-Quality Amoeba Genomes Reveal Widespread Codon Usage Mismatch Between Giant Viruses and Their Hosts	13
Genetic Diversity in Chimpanzee Transcriptomics Does Not Represent Wild Populations	13
Ancient Loss of Catalytic Selenocysteine Spurred Convergent Adaptation in a Mammalian Oxidoreductase	12
The Legacy of Infectious Disease Exposure on the Genomic Diversity of Indigenous Southern Mexicans	12
Comparative Population Genomics of Arctic Sled Dogs Reveals a Deep and Complex History	12
Experimental Evaluation of a Direct Fitness Effect of the De Novo Evolved Mouse Gene Pldi	12
Making a Pathogen? Evaluating the Impact of Protist Predation on the Evolution of Virulence in Serratia marcescens	12
Sequencing Bait: Nuclear and Mitogenome Assembly of an Abundant Coastal Tropical and Subtropical Fish,Atherinomorus stipes	12
Plethora of New Marsupial Genomes Informs Our Knowledge of Marsupial MHC Class II	12
Examining the Effects of Temperature on the Evolution of Bacterial tRNA Pools	12
LukProt: A Database of Eukaryotic Predicted Proteins Designed for Investigations of Animal Origins	12
Chromosome-Scale Assembly of Capsella orientalis, Maternal Progenitor of Cosmopolitan Allotetraploid C. bursa-pastoris	12
Domestication Reduces Plant Immune Receptor Gene Repertoires Across Lineages	12
Gene Duplication, Shifting Selection, and Dosage Balance of Silicon Transporter Proteins in Marine and Freshwater Diatoms	12
Mitochondrial Variation in Anopheles gambiae and Anopheles coluzzii: Phylogeographic Legacy and Mitonuclear Associations With Metabolic Resistance to Pathogens and Insecticides	12
Populations, Traits, and Their Spatial Structure in Humans	12
Correction to: Editorial 2024	12
Piecing Together the History of Protein Folds From a Fragmented Evolutionary Record	12
Genetic Variation in Jamaican Populations of the Coffee Berry Borer, Hypothenemus hampei	12
Chromosome Structural Rearrangements in Invasive Haplodiploid Ambrosia Beetles Revealed by the Genomes of Euwallacea fornicatus (Eichhoff) and Euwallacea similis (Ferrari) (Coleoptera, C	11
Genome Assembly of the Nematode Rhabditoides Inermis From a Complex Microbial Community	11

Genome-Scale Data Reveal Deep Lineage Divergence and a Complex Demographic History in the Texas Horned Lizard (Phrynosoma cornutum) throughout the Southwestern and Central United States	11
THI1 Gene Evolutionary Trends: A Comprehensive Plant-Focused Assessment via Data Mining and Large-Scale Analysis	11
Chromosome-Level Genome Assemblies of Two Hypnales (Mosses) Reveal High Intergeneric Synteny	11
RNA-sequencing Analysis of Hybrid Females Reveals a Dominance of Expression of Alleles From Outcrossing Species Over Those From Selfing Species	11
Alternative Modes of Introgression-Mediated Selection Shaped Crop Adaptation to Novel Climates	11
Divergence and Selection in a Cryptic Species Complex (Geonoma undata: Arecaceae) in the Northern Andes of Colombia	11
Potential Role of DNA Methylation as a Driver of Plastic Responses to the Environment Across Cells, Organisms, and Populations	11
Nucleotide Usage Biases Distort Inferences of the Species Tree	11
Chromosome-Scale Genome Assembly of the Solitary Parasitoid Wasp Microplitis manilae Ashmead, 1904 (Braconidae: Microgastrinae)	11
Tracing Homopolymers in Oikopleura dioica's Mitogenome	11
Comparing Small and Large Genomes Within Monogonont Rotifers	11
Modeling Substitution Rate Evolution across Lineages and Relaxing the Molecular Clock	11
A Genome for Edith’s Checkerspot Butterfly: An Insect with Complex Host-Adaptive Suites and Rapid Evolutionary Responses to Environmental Changes	11
Insertion–Deletion Events Are Depleted in Protein Regions with Predicted Secondary Structure	11
Correction to: Genetic Diversity in Chimpanzee Transcriptomics Does Not Represent Wild Populations	11
Chromosome-Level Genome Assembly of the Green Peafowl (Pavo muticus)	10
Evolution of Metabolome and Transcriptome Supports a Hierarchical Organization of Adaptive Traits	10
Duplications and Retrogenes Are Numerous and Widespread in Modern Canine Genomic Assemblies	10
Phylogenomic Analyses of 2,786 Genes in 158 Lineages Support a Root of the Eukaryotic Tree of Life between Opisthokonts and All Other Lineages	10
Chromosome-Level Assembly and Annotation of the Genome of the Endangered Giant Patagonian Bumble Bee Bombus dahlbomii	10
Rapid Adaptation Often Occurs through Mutations to the Most Highly Conserved Positions of the RNA Polymerase Core Enzyme	10
Assessing the Presence of Recent Adaptation in the Human Genome With Mixture Density Regression	10
De Novo Genome Assembly and Annotation for the Synanthropic Webbing Clothes Moth (Tineola bisselliella): A Globally Distributed, Economically Important Pest	10
C. Brandon Ogbunu(gafor)	10
Epigenetic and Genetic Population Structure is Coupled in a Marine Invertebrate	10
Aminoacyl-tRNA Synthetase Evolution within the Dynamic Tripartite Translation System of Plant Cells	10
Small Genome Size Ensures Adaptive Flexibility for an Alpine Ginger	10
Contrasting Genomic Evolution Between Domesticated and WildKluyveromyces lactisYeast Populations	10
Telomere-to-telomere Genome Assembly of the Clubroot Pathogen Plasmodiophora Brassicae	10
The First Annotated Genome Assembly of Macrophomina tecta Associated with Charcoal Rot of Sorghum	10
Flatworm Transcriptomes Reveal Widespread Parasitism by Histophagous Ciliates	10
How Sequence Context-Dependent Mutability Drives Mutation Rate Variation in the Genome	10
Phylotranscriptomic Analyses of Mycoheterotrophic Monocots Show a Continuum of Convergent Evolutionary Changes in Expressed Nuclear Genes From Three Independent Nonphotosynthetic Lineages	10
Chromosome-Level Genome Assembly of the Australian Rainforest Tree Rhodamnia argentea (Malletwood)	10
Contrasting Modes of Mitochondrial Genome Evolution in Sister Taxa of Wood-Eating Marine Bivalves (Teredinidae and Xylophagaidae)	10
The Linkage-Disequilibrium and Recombinational Landscape in Daphnia pulex	10
History of Diversification and Adaptation from North to South Revealed by Genomic Data: Guanacos from the Desert to Sub-Antarctica	10
Campylobacter fetus Plasmid Diversity: Comparative Analysis of Fully Sequenced Plasmids and Proposed Classification Scheme	10
The Genome of Plasmodium gonderi: Insights into the Evolution of Human Malaria Parasites	10
The Early Evolution of Tudor Genes in Holozoa and How Their Distribution Was Influenced by Life History Traits in Metazoa	9
Dollo Parsimony Overestimates Ancestral Gene Content Reconstructions	9
Phylogeny and Expansion of Serine/Threonine Kinases in Phagocytotic Bacteria in the Phylum Planctomycetota	9
Gene Loss may have Shaped the Cnidarian and Bilaterian Hox and ParaHox Complement	9
Chromosomal-Level Genome Assembly of the SpringtailTomocerus qinae(Collembola: Tomoceridae)	9
Functional Compensation of Mouse Duplicates by their Paralogs Expressed in the Same Tissues	9
Rel/NF-κB Transcription Factors Emerged at the Onset of Opisthokonts	9
The Site/Group Extended Data Format and Tools	9
Habitat-associated Genomic Variation in a Wall Lizard from an Oceanic Island	9
Inside the Shark Nursery: The Evolution of Live Birth in Cartilaginous Fish	9
Chromosome-Level Genome Assembly of the Asian Tramp Snail Bradybaena similaris (Stylommatophora: Camaenidae)	9
Exploring the Relationship of Transposable Elements and Ageing: Causes and Consequences	9
Re-examining Correlations Between Synonymous Codon Usage and Protein Bond Angles in Escherichia coli	9
TIdeS: A Comprehensive Framework for Accurate Open Reading Frame Identification and Classification in Eukaryotic Transcriptomes	9
Replication-Dependent Organization Constrains Positioning of Long DNA Repeats in Bacterial Genomes	9
Comparative Genomics Reveals Intra and Inter Species Variation in the Pathogenic Fungus Batrachochytrium dendrobatidis	9
Brain Gene Expression of Foraging Behavior and Social Environment inCeratina calcarata	9
A Short-Term View of Protein Sequence Evolution from Salmonella	9
Selection Shapes the Genomic Landscape of Introgressed Ancestry in a Pair of Sympatric Sea Urchin Species	9
Structural Enzymology, Phylogenetics, Differentiation, and Symbolic Reflexivity at the Dawn of Biology	9
Segregating Complete Tf2 Elements Are Largely Neutral in Fission Yeast	9
Comprehensive Transcriptome Sequencing of Tanaidacea with Proteomic Evidences for Their Silk	9
Inferring the Demographic History of Aye-Ayes (Daubentonia madagascariensis) from High-Quality, Whole-Genome, Population-Level Data	9
Dynamic Birth and Death of Argonaute Gene Family Functional Repertoire Across Caenorhabditis Nematodes	9
Six Newly Sequenced Chloroplast Genomes From Quadriflagellate Chlamydomonadales (Chlorophyceae): Phylogeny and Comparative Genome Analyses	8
Mutational Signatures in Wild Type Escherichia coli Strains Reveal Predominance of DNA Polymerase Errors	8
Molecular Basis of Eusocial Complexity: The Case of Worker Reproductivity in Bees	8
Phylogenetic Methods Meet Deep Learning	8
The First De Novo HiFi Genome Assemblies for Three Clownfish-hosting Sea Anemone Species (Anthozoa: Actiniaria)	8
scRNA-seq Reveals Novel Genetic Pathways and Sex Chromosome Regulation in Tribolium Spermatogenesis	8
Chromosome-Level Genome Assembly and Annotation of Corallium rubrum: A Mediterranean Coral Threatened by Overharvesting and Climate Change	8
Pseudomonas putida Dynamics of Adaptation under Prolonged Resource Exhaustion	8
A Machine Learning Framework Identifies Plastid-Encoded Proteins Harboring C3 and C4 Distinguishing Sequence Information	8
Global Environmental Factors Impact the Evolution of Adult Hemoglobins in Squamata Reptiles (Lizards and Snakes) and Terrestrial Turtles	8
Phylogenetic Relatedness Does not Predict Patterns of Parallel Transcriptome Adaptation in Drosophila	8
IRplus: An Augmented Tool to Detect Inverted Repeats in Plastid Genomes	8
Pervasive Mitochondrial tRNA Gene Loss in Clade B of Haplosclerid Sponges (Porifera, Demospongiae)	8
The Evolution of Widespread Recombination Suppression on the Dwarf Hamster (Phodopus) X Chromosome	8
From Trees to Traits: A Review of Advances in PhyloG2P Methods and Future Directions	8
Chromosome-Level Assembly and Annotation of the Grey Reef Shark (Carcharhinus amblyrhynchos) Genome	8
Maturases and Group II Introns in the Mitochondrial Genomes of the Deepest Jakobid Branch	8
The Mutational Road not Taken: Using Ancestral Sequence Resurrection to Evaluate the Evolution of Plant Enzyme Substrate Preferences	8
MATEdb2, a Collection of High-Quality Metazoan Proteomes across the Animal Tree of Life to Speed Up Phylogenomic Studies	8
Reduced Efficacy of Selection on a Young Z Chromosome Region of Schistosoma japonicum	8
Adaptive Regulation of Stopover Refueling during Bird Migration: Insights from Whole Blood Transcriptomics	7
Pooled, Long-read Sequencing for Structural Variant Characterization in Schistosome Populations	7
Chromosome-Level Assembly of Artemia franciscana Sheds Light on Sex Chromosome Differentiation	7
Long-Read Sequencing Reveals Rapid Evolution of Immunity- and Cancer-Related Genes in Bats	7
Expanding on Our Knowledge of Ecdysozoan Genomes: A Contiguous Assembly of the Meiofaunal Priapulan Tubiluchus corallicola	7
Genome-Wide Temporal Gene Expression Reveals a Post-Reproductive Shift in the Nematode Caenorhabditis briggsae	7
Selection for Early Reproduction Leads to Accelerated Aging and Extensive Metabolic Remodeling in Drosophila melanogaster	7
Base Composition, Codon Usage, and Patterns of Gene Sequence Evolution in Butterflies	7
Genomic Comparisons Reveal Selection Pressure and Functional Variation Between Nutritional Endosymbionts of Cave-Adapted and Epigean Hawaiian Planthoppers	7
Evolution of Dosage-Sensitive Genes by Tissue-Restricted Expression Changes	7
From macro to micro: De novo genomes of Aedes mosquitoes enable comparative genomics among close and distant relatives	7
Transcriptional Misexpression in Hybrids between Species Linked by Gene Flow Is Associated With Patterns of Sequence Divergence	7