Genome Biology and Evolution

Article	Citations
Exploring the Natural Origins of SARS-CoV-2 in the Light of Recombination	84
Mutation Rates and Selection on Synonymous Mutations in SARS-CoV-2	82
Genomic Insights into Plastid Evolution	76
Long Reads Are Revolutionizing 20 Years of Insect Genome Sequencing	74
The Genomic Architecture and Evolutionary Fates of Supergenes	66
Effects of Synonymous Mutations beyond Codon Bias: The Evidence for Adaptive Synonymous Substitutions from Microbial Evolution Experiments	55
A Repertory of Rearrangements and the Loss of an Inverted Repeat Region in Passiflora Chloroplast Genomes	54
Continental-Scale Gene Flow Prevents Allopatric Divergence of Pelagic Freshwater Bacteria	52
Complete Mitochondrial Genome of a Gymnosperm, Sitka Spruce (Picea sitchensis), Indicates a Complex Physical Structure	50
Draft Genomes of Amaranthus tuberculatus, Amaranthus hybridus, and Amaranthus palmeri	49
Comparative Genomics and Pan-Genomics of the Myxococcaceae, including a Description of Five Novel Species: Myxococcus eversor sp. nov., Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllan	48
Chromosomal-Level Genome Assembly of the Sea Urchin Lytechinus variegatus Substantially Improves Functional Genomic Analyses	46
DrosoPhyla: Resources for Drosophilid Phylogeny and Systematics	45
The Coevolution of Fungal Mitochondrial Introns and Their Homing Endonucleases (GIY-YIG and LAGLIDADG)	44
Gene Body Methylation in Plants: Mechanisms, Functions, and Important Implications for Understanding Evolutionary Processes	43
The Iron-Responsive Genome of the Chiton Acanthopleura granulata	42
Viviparous Reptile Regarded to Have Temperature-Dependent Sex Determination Has Old XY Chromosomes	38
Long-Read Genome Assemblies Reveal Extraordinary Variation in the Number and Structure of MHC Loci in Birds	38
Comparative Genomics Underlines Multiple Roles of Profftella, an Obligate Symbiont of Psyllids: Providing Toxins, Vitamins, and Carotenoids	37
The Evolution of Comparative Phylogeography: Putting the Geography (and More) into Comparative Population Genomics	37
The Evolution of Chromosome Numbers: Mechanistic Models and Experimental Approaches	36
Causes and Consequences of Purifying Selection on SARS-CoV-2	36
Guppy Y Chromosome Integrity Maintained by Incomplete Recombination Suppression	33
A New Dinoflagellate Genome Illuminates a Conserved Gene Cluster Involved in Sunscreen Biosynthesis	32
Improved Reference Genome Uncovers Novel Sex-Linked Regions in the Guppy (Poecilia reticulata)	32

A Chromosome-Level Genome Assembly of Dendrobium Huoshanense Using Long Reads and Hi-C Data	32
Symbiotic and Nonsymbiotic Members of the Genus Ensifer (syn. Sinorhizobium) Are Separated into Two Clades Based on Comparative Genomics and High-Throughput Phenotyping	30
On the prospect of achieving accurate joint estimation of selection with population history	30
The Evolution of Phenotypic Plasticity in Response to Temperature Stress	29
Uneven Missing Data Skew Phylogenomic Relationships within the Lories and Lorikeets	29
Transposable Elements Contribute to Genome Dynamics and Gene Expression Variation in the Fungal Plant PathogenVerticillium dahliae	28
Transposable Element Mobilization in Interspecific Yeast Hybrids	28
Rampant Genome-Wide Admixture across theHeliconiusRadiation	28
Coxiella burnetii and Related Tick Endosymbionts Evolved from Pathogenic Ancestors	28
Stochastic Gain and Loss of Novel Transcribed Open Reading Frames in the Human Lineage	28
Evolution of Mutation Rate in Astronomically Large Phytoplankton Populations	27
Genome-Wide Analysis of Biosynthetic Gene Cluster Reveals Correlated Gene Loss with Absence of Usnic Acid in Lichen-Forming Fungi	27
Sharp Increase of Problematic Mitogenomes of Birds: Causes, Consequences, and Remedies	27
CHH Methylation Islands: A Nonconserved Feature of Grass Genomes That Is Positively Associated with Transposable Elements but Negatively Associated with Gene-Body Methylation	27
The Order of Trait Emergence in the Evolution of Cyanobacterial Multicellularity	27
The Genetic Architecture of Emerging Fungicide Resistance in Populations of a Global Wheat Pathogen	26
Step-by-Step Evolution of Telomeres: Lessons from Yeasts	26
Digging into the Genomic Past of Swiss Honey Bees by Whole-Genome Sequencing Museum Specimens	26
Biased Gene Retention in the Face of Introgression Obscures Species Relationships	25
ADAR Editing in Viruses: An Evolutionary Force to Reckon with	25
Evolutionary Perspectives on Germline-Restricted Chromosomes in Flies (Diptera)	25
Ultralong Oxford Nanopore Reads Enable the Development of a Reference-Grade Perennial Ryegrass Genome Assembly	25
Multiple Invasions of Visitor, a DD41D Family of Tc1/mariner Transposons, throughout the Evolution of Vertebrates	24
How Can We Resolve Lewontin’s Paradox?	24
The Population-Specific Impact of Neandertal Introgression on Human Disease	24
Ubiquity and Origins of Structural Maintenance of Chromosomes (SMC) Proteins in Eukaryotes	24
Deep Learning in Population Genetics	24
A De Novo Transcriptome Assembly ofCeratopteris richardiiProvides Insights into the Evolutionary Dynamics of Complex Gene Families in Land Plants	24
Two Lineages of Pseudomonas aeruginosa Filamentous Phages: Structural Uniformity over Integration Preferences	24
Whole-Genome Transcriptome Analyses of Native Symbionts Reveal Host Coral Genomic Novelties for Establishing Coral–Algae Symbioses	24
Transcription, mRNA Export, and Immune Evasion Shape the Codon Usage of Viruses	24
Comparative Analysis of Genomic Repeat Content in Gomphocerine Grasshoppers Reveals Expansion of Satellite DNA and Helitrons in Species with Unusually Large Genomes	23
Phylogenomics Identifies a New Major Subgroup of Apicomplexans, Marosporida class nov., with Extreme Apicoplast Genome Reduction	23
Gene Duplications Trace Mitochondria to the Onset of Eukaryote Complexity	23
Dynamics in Secondary Metabolite Gene Clusters in Otherwise Highly Syntenic and Stable Genomes in the Fungal GenusBotrytis	23
Benchmarking Orthogroup Inference Accuracy: Revisiting Orthobench	23
The Dryas iulia Genome Supports Multiple Gains of a W Chromosome from a B Chromosome in Butterflies	22
Phylogenomic Analysis of Wolbachia Strains Reveals Patterns of Genome Evolution and Recombination	22
The Protector within: Comparative Genomics of APSE Phages across Aphids Reveals Rampant Recombination and Diverse Toxin Arsenals	22
The Genome of the Cauliflower Coral Pocillopora verrucosa	22
Genomic Evidence of an Ancient East Asian Divergence Event in Wild Saccharomyces cerevisiae	22
Impact of Transposable Elements on Methylation and Gene Expression across Natural Accessions of Brachypodium distachyon	21
Divergent Evolution of Mutation Rates and Biases in the Long-Term Evolution Experiment with Escherichia coli	21
Mutational Signatures of Replication Timing and Epigenetic Modification Persist through the Global Divergence of Mutation Spectra across the Great Ape Phylogeny	21
Coexpression Clusters and Allele-Specific Expression in Metabolism-Based Herbicide Resistance	21
The Simons Genome Diversity Project: A Global Analysis of Mobile Element Diversity	21
A High-Quality Reference Genome for a Parasitic Bivalve with Doubly Uniparental Inheritance (Bivalvia: Unionida)	21
Gene Duplications Are At Least 50 Times Less Frequent than Gene Transfers in Prokaryotic Genomes	21
Supersized Ribosomal RNA Expansion Segments in Asgard Archaea	21
Large-Scale Phylogenetic Analysis of Trypanosomatid Adenylate Cyclases Reveals Associations with Extracellular Lifestyle and Host–Pathogen Interplay	20

Are Geckos Special in Sex Determination? Independently Evolved Differentiated ZZ/ZW Sex Chromosomes in Carphodactylid Geckos	20
Inferring the Deep Past from Molecular Data	20
The Evolutionary Origins of Extreme Halophilic Archaeal Lineages	20
A New High-Quality Draft Genome Assembly of the Chinese Cordyceps Ophiocordyceps sinensis	20
Whole-Genome Sequence Data Suggest Environmental Adaptation of Ethiopian Sheep Populations	20
Not Frozen in the Ice: Large and Dynamic Rearrangements in the Mitochondrial Genomes of the Antarctic Fish	20
A Path toward SARS-CoV-2 Attenuation: Metabolic Pressure on CTP Synthesis Rules the Virus Evolution	20
Chromosome-Level Reference Genomes for Two Strains of Caenorhabditis briggsae: An Improved Platform for Comparative Genomics	19
Evolutionary and Comparative Analysis of Bacterial Nonhomologous End Joining Repair	19
Genomic Signatures of Honey Bee Association in an Acetic Acid Symbiont	19
Plastid Genome Evolution in the Subtribe Calypsoinae (Epidendroideae, Orchidaceae)	19
Fitness Effects of Mutations: An Assessment of PROVEAN Predictions Using Mutation Accumulation Data	19
piRNA and Transposon Dynamics in Drosophila: A Female Story	19
Rapid Spread of Mutant Alleles in Worldwide SARS-CoV-2 Strains Revealed by Genome-Wide Single Nucleotide Polymorphism and Variation Analysis	19
Brain Transcriptomics of Wild and Domestic Rabbits Suggests That Changes in Dopamine Signaling and Ciliary Function Contributed to Evolution of Tameness	18
Selective Sweeps in a Nutshell: The Genomic Footprint of Rapid Insecticide Resistance Evolution in the Almond Agroecosystem	18
Anomalous Phylogenetic Behavior of Ribosomal Proteins in Metagenome-Assembled Asgard Archaea	18
A Chromosome—Level Genome Assembly of the Spotted Scat (Scatophagus argus)	18
At the Root of T2R Gene Evolution: Recognition Profiles of Coelacanth and Zebrafish Bitter Receptors	18
A Eukaryote-Wide Perspective on the Diversity and Evolution of the ARF GTPase Protein Family	18
The Tetragnatha kauaiensis Genome Sheds Light on the Origins of Genomic Novelty in Spiders	18
Rampant Nuclear Transfer and Substitutions of Plastid Genes in Passiflora	18
Predicted Input of Uncultured Fungal Symbionts to a Lichen Symbiosis from Metagenome-Assembled Genomes	18
A Practical Guide to Design and Assess a Phylogenomic Study	18
The Genome Assembly and Annotation of the Apollo Butterfly Parnassius apollo, a Flagship Species for Conservation Biology	18
Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation	18
Recurrent Loss of abaA, a Master Regulator of Asexual Development in Filamentous Fungi, Correlates with Changes in Genomic and Morphological Traits	17
Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera	17
In-Depth Satellitome Analyses of 37 Drosophila Species Illuminate Repetitive DNA Evolution in the Drosophila Genus	17
Uniparental Genome Elimination in Australian Carp Gudgeons	17
Unbiased Subgenome Evolution in Allotetraploid Species ofEphedraand Its Implications for the Evolution of Large Genomes in Gymnosperms	17
Read between the Lines: Diversity of Nontranslational Selection Pressures on Local Codon Usage	17
Chromosomal-Level Genome Assembly of the Painted Sea Urchin Lytechinus pictus: A Genetically Enabled Model System for Cell Biology and Embryonic Development	17
Comparing Ultraconserved Elements and Exons for Phylogenomic Analyses of Middle American Cichlids: When Data Agree to Disagree	17
sangeranalyseR: Simple and Interactive Processing of Sanger Sequencing Data in R	17
Whole-Genome Comparisons of Ergot Fungi Reveals the Divergence and Evolution of Species within the Genus Claviceps Are the Result of Varying Mechanisms Driving Genome Evolution and Host Range E	17
Phylogenomics of Opsin Genes in Diptera Reveals Lineage-Specific Events and Contrasting Evolutionary Dynamics in Anopheles and Drosophila	16
Extensive Horizontal Gene Transfer within and between Species of Coagulase-Negative Staphylococcus	16
Pervasive Mitonuclear Coadaptation Underlies Fast Development in Interpopulation Hybrids of a Marine Crustacean	16
Evolution of the Insect PPK Gene Family	16
The Genome of the Poecilogonous Annelid Streblospio benedicti	16
Insights into Mus musculus Population Structure across Eurasia Revealed by Whole-Genome Analysis	16
The Presence of Ancient Core Genes Reveals Endogenization from Diverse Viral Ancestors in Parasitoid Wasps	16
Evidence for a Syncytial Origin of Eukaryotes from Ancestral State Reconstruction	16
Synteny-Based Genome Assembly for 16 Species ofHeliconiusButterflies, and an Assessment of Structural Variation across the Genus	16
Analysis of Paralogons, Origin of the Vertebrate Karyotype, and Ancient Chromosomes Retained in Extant Species	16
Lineage and Parent-of-Origin Effects in DNA Methylation of Honey Bees (Apis mellifera) Revealed by Reciprocal Crosses and Whole-Genome Bisulfite Sequencing	16
Large Phylogenomic Data sets Reveal Deep Relationships and Trait Evolution in Chlorophyte Green Algae	16
Genome-Scale Data Reveal Deep Lineage Divergence and a Complex Demographic History in the Texas Horned Lizard (Phrynosoma cornutum) throughout the Southwestern and Central United States	15
Plasmids Related to the Symbiotic Nitrogen Fixation Are Not Only Cooperated Functionally but Also May Have Evolved over a Time Span in Family Rhizobiaceae	15
Evolutionary History of Alpha Satellite DNA Repeats Dispersed within Human Genome Euchromatin	15
Mitochondrial Genome Evolution of Placozoans: Gene Rearrangements and Repeat Expansions	15
First Complete Genome Sequences of Janthinobacterium lividum EIF1 and EIF2 and Their Comparative Genome Analysis	15
Genetics and Material Culture Support Repeated Expansions into Paleolithic Eurasia from a Population Hub Out of Africa	15
Comparative Genomics Suggests Mechanisms of Genetic Adaptation toward the Catabolism of the Phenylurea Herbicide Linuron in Variovorax	15
Whole-Genome Sequencing Highlights Conservative Genomic Strategies of a Stress-Tolerant, Long-Lived Scleractinian Coral, Porites australiensis Vaughan, 1918	15
Complete Genome Sequence of the Polysaccharide-Degrading Rumen Bacterium Pseudobutyrivibrio xylanivorans MA3014 Reveals an Incomplete Glycolytic Pathway	15
Large-Scale Annotation and Evolution Analysis of MiRNA in Insects	15
Comparative Population Genetics in the Human Gut Microbiome	15
Reconstructing the History of Variation in Effective Population Size along Phylogenies	15
Comparative Proteomics of Octocoral and Scleractinian Skeletomes and the Evolution of Coral Calcification	15
De Novo Genome Assembly of Limpet Bathyacmaea lactea (Gastropoda: Pectinodontidae): The First Reference Genome of a Deep-Sea Gastropod Endemic to Cold Seeps	15
Comparative Transcriptomics across Nematode Life Cycles Reveal Gene Expression Conservation and Correlated Evolution in Adjacent Developmental Stages	15
Expression Evolution of Ancestral XY Gametologs across All Major Groups of Placental Mammals	15
A New Gene Family Diagnostic for Intracellular Biomineralization of Amorphous Ca Carbonates by Cyanobacteria	15
Alignment-Integrated Reconstruction of Ancestral Sequences Improves Accuracy	14
Chromosomal Inversion Polymorphisms in Two Sympatric Ascidian Lineages	14
Sequence of aCoxiellaEndosymbiont of the TickAmblyomma nuttalliSuggests a Pattern of Convergent Genome Reduction in theCoxiellaGenus	14
Portiera Gets Wild: Genome Instability Provides Insights into the Evolution of Both Whiteflies and Their Endosymbionts	14
Diversity and Evolution of Pigment Types in MarineSynechococcusCyanobacteria	14
Multiple Genomic Events Altering Hominin SIGLEC Biology and Innate Immunity Predated the Common Ancestor of Humans and Archaic Hominins	14
Origin and Evolution of the Cannabinoid Oxidocyclase Gene Family	14
Molecular Evolution of Ultraviolet Visual Opsins and Spectral Tuning of Photoreceptors in Anemonefishes (Amphiprioninae)	14
Evolutionary Remodeling of the Cell Envelope in Bacteria of the Planctomycetes Phylum	14
Draft Genome Assemblies and Annotations of Agrypnia vestita Walker, and Hesperophylax magnus Banks Reveal Substantial Repetitive Element Expansion in Tube Case-Making Caddisflies (Insect	14
Genome-Wide Association and Selective Sweep Studies Reveal the Complex Genetic Architecture of DMI Fungicide Resistance inCercospora beticola	14
HyRAD-X Exome Capture Museomics Unravels Giant Ground Beetle Evolution	14
Only a Single Taxonomically Restricted Gene Family in the Drosophila melanogaster Subgroup Can Be Identified with High Confidence	14
The First Draft Genome Assembly of Snow Sheep (Ovis nivicola)	14
Evolution of a Record-Setting AT-Rich Genome: Indel Mutation, Recombination, and Substitution Bias	14

Nanopore Amplicon Sequencing Reveals Molecular Convergence and Local Adaptation of Rhodopsin in Great Lakes Salmonids	14
Genomic Analysis of the Only Blind Cichlid Reveals Extensive Inactivation in Eye and Pigment Formation Genes	14
Plastome Structural Evolution and Homoplastic Inversions in Neo-Astragalus (Fabaceae)	13
The Identification and Evolutionary Trends of the Solute Carrier Superfamily in Arthropods	13
Chemoreceptor Diversity in Apoid Wasps and Its Reduction during the Evolution of the Pollen-Collecting Lifestyle of Bees (Hymenoptera: Apoidea)	13
The Assembled and Annotated Genome of the Fairy-Ring Fungus Marasmius oreades	13
Our Tangled Family Tree: New Genomic Methods Offer Insight into the Legacy of Archaic Admixture	13
Complete Sequence of a 641-kb Insertion of Mitochondrial DNA in the Arabidopsis thaliana Nuclear Genome	13
Comparative Genomics of Strictly Vertically Transmitted, Feminizing Microsporidia Endosymbionts of Amphipod Crustaceans	13
Comparative Genomics Reveals Factors Associated with Phenotypic Expression of Wolbachia	13
Evolving Perspective on the Origin and Diversification of Cellular Life and the Virosphere	13
Reconstruction of Nitrogenase Predecessors Suggests Origin from Maturase-Like Proteins	13
Bumblebee Workers Show Differences in Allele-Specific DNA Methylation and Allele-Specific Expression	13
Mitochondrial DNA Sequence Diversity in Mammals: A Correlation between the Effective and Census Population Sizes	13
Genetic Adaptation in New York City Rats	13
Chromosome-Level Assembly of the Common Lizard (Zootoca vivipara) Genome	13
Ampliconic Genes on the Great Ape Y Chromosomes: Rapid Evolution of Copy Number but Conservation of Expression Levels	13
Single-Cell Transcriptomics of Abedinium Reveals a New Early-Branching Dinoflagellate Lineage	13
Transcriptome-Wide Comparisons and Virulence Gene Polymorphisms of Host-Associated Genotypes of the Cnidarian Parasite Ceratonova shasta in Salmonids	13
Evolutionary Plasticity of Mating-Type Determination Mechanisms inParamecium aureliaSibling Species	12
Chromosome-Level Genome Assembly of the Common Chaffinch (Aves: Fringilla coelebs): A Valuable Resource for Evolutionary Biology	12
The First Draft Genome of the Plasterer Bee Colletes gigas (Hymenoptera: Colletidae: Colletes)	12
A Novel Microbialite-Associated Phototrophic Chloroflexi Lineage Exhibiting a Quasi-Clonal Pattern along Depth	12
Hybridization Dynamics and Extensive Introgression in theDaphnia longispinaSpecies Complex: New Insights from a High-QualityDaphnia galeataReference Genome	12
Large Genetic Diversity and Strong Positive Selection in F-Box and GPCR Genes among the Wild Isolates of Caenorhabditis elegans	12
Culture Volume Influences the Dynamics of Adaptation under Long-Term Stationary Phase	12
A Comprehensive Multi-Omic Approach Reveals a Relatively Simple Venom in a Diet Generalist, the Northern Short-Tailed Shrew, Blarina brevicauda	12
Evolution of recombination landscapes in diverging populations of bread wheat	12
Genome Stability Is in the Eye of the Beholder: CR1 Retrotransposon Activity Varies Significantly across Avian Diversity	12
The Birth-and-Death Evolution of Cytochrome P450 Genes in Bees	12
Genomic Rearrangements and Sequence Evolution across Brown Algal Organelles	12
The Effects of GC-Biased Gene Conversion on Patterns of Genetic Diversity among and across Butterfly Genomes	12
Chromosome-Level Genome Assembly of Chinese Sucker (Myxocyprinus asiaticus) Reveals Strongly Conserved Synteny Following a Catostomid-Specific Whole-Genome Duplication	12
New Insights into Mitochondrial–Nuclear Interactions Revealed through Analysis of Small RNAs	12
The Evolution of Interdependence in a Four-Way Mealybug Symbiosis	12
Enrichment of Non-B-Form DNA at D. melanogaster Centromeres	12
Testing sex-biased admixture origin of macaque species using autosomal and X-chromosomal genomic sequences	12
Genome-Wide Epigenetic Signatures of Adaptive Developmental Plasticity in the Andes	12
A Minimally Morphologically Destructive Approach for DNA Retrieval and Whole-Genome Shotgun Sequencing of Pinned Historic Dipteran Vector Species	12
Microhomologies Are Associated with Tandem Duplications and Structural Variation in Plant Mitochondrial Genomes	12
Contributions of cis- and trans-Regulatory Evolution to Transcriptomic Divergence across Populations in the Drosophila mojavensis Larval Brain	12
Clustering of Sex-Biased Genes and Transposable Elements in the Genome of the Medaka FishOryzias latipes	12
High-Resolution Estimates of Crossover and Noncrossover Recombination from a Captive Baboon Colony	12
Hunting for Beneficial Mutations: Conditioning on SIFT Scores When Estimating the Distribution of Fitness Effect of New Mutations	12
Multiple Horizontal Acquisitions of Plant Genes in the Whitefly Bemisia tabaci	12
Considering Genomic Scans for Selection as Coalescent Model Choice	11
The Genomic Signature of Allopatric Speciation in a Songbird Is Shaped by Genome Architecture (Aves: Certhia americana)	11
Population Genomics of the Maize Pathogen Ustilago maydis: Demographic History and Role of Virulence Clusters in Adaptation	11
The Phylogenetic Position of the Enigmatic, Polypodium hydriforme (Cnidaria, Polypodiozoa): Insights from Mitochondrial Genomes	11
Molecular Evolution of Ecological Specialisation: Genomic Insights from the Diversification of Murine Rodents	11
Bidirectional Introgression between Mus musculus domesticus and Mus spretus	11
Coordinated Gene Expression and Chromatin Regulation during Hydra Head Regeneration	11
High-Quality Genome Assembly and Comprehensive Transcriptome of the Painted Lady ButterflyVanessa cardui	11
Genomic Evidence for Convergent Molecular Adaptation in Electric Fishes	11
Defense Response in Brazilian Honey Bees (Apis mellifera scutellata × spp.) Is Underpinned by Complex Patterns of Admixture	11
Genic Selection Within Prokaryotic Pangenomes	11
A long-term conserved satellite DNA that remains unexpanded in several genomes of Characiformes fish is actively transcribed	11
Inferring Balancing Selection From Genome-Scale Data	11
Genomic Signature of Shifts in Selection and Alkaline Adaptation in Highland Fish	11
How Sequence Context-Dependent Mutability Drives Mutation Rate Variation in the Genome	11
nf-LO: A Scalable, Containerized Workflow for Genome-to-Genome Lift Over	11
Chromosome-Level Genome Assemblies of Two Hypnales (Mosses) Reveal High Intergeneric Synteny	11
Expanding the Menu: Are Polyphagy and Gene Family Expansions Linked across Lepidoptera?	11
New Environment, New Invaders—Repeated Horizontal Transfer of LINEs to Sea Snakes	11
Genome Assembly of the Ragweed Leaf Beetle: A Step Forward to Better Predict Rapid Evolution of a Weed Biocontrol Agent to Environmental Novelties	11
Postadmixture Selection on Chileans Targets Haplotype Involved in Pigmentation, Thermogenesis and Immune Defense against Pathogens	11
Ancestral Physical Stress and Later Immune Gene Family Expansions Shaped Bivalve Mollusc Evolution	11
Genetic Signatures of Evolution of the Pluripotency Gene Regulating Network across Mammals	11
Mitochondrial Genome Evolution in Pelagophyte Algae	11
Demographic History of the Brown Bear (Ursus arctos) on Hokkaido Island, Japan, Based on Whole-Genomic Sequence Analysis	10
Phylogenomics of the Epigenetic Toolkit Reveals Punctate Retention of Genes across Eukaryotes	10
Candidates for Balancing Selection inLeishmania donovaniComplex Parasites	10
Genomic Signatures of a Major Adaptive Event in the Pathogenic Fungus Melampsora larici-populina	10
Ancestral State Reconstructions Trace Mitochondria But Not Phagocytosis to the Last Eukaryotic Common Ancestor	10
Divergent Evolution of Early Terrestrial Fungi Reveals the Evolution of Mucormycosis Pathogenicity Factors	10
De novoAssembly and Comparative Analyses of Mitochondrial Genomes in Piperales	10
Examination of Gene Loss in the DNA Mismatch Repair Pathway and Its Mutational Consequences in a Fungal Phylum	10
Heterogeneous Mutation Rates and Spectra in Yeast Hybrids	10
The Dynamics, Causes, and Impacts of Mammalian Evolutionary Rates Revealed by the Analyses of Capybara Draft Genome Sequences	10
De Novo Genome Assembly and Annotation of an Andean Caddisfly, Atopsyche davidsoni Sykora, 1991, a Model for Genome Research of High-Elevation Adaptations	10
Fine-Scale Position Effects Shape the Distribution of Inversion Breakpoints in Drosophila melanogaster	10
Phylogenomic Analyses Show Repeated Evolution of Hypertrophied Lips Among Lake Malawi Cichlid Fishes	10
Drivers of Mating Type Composition inTetrahymena thermophila	10
Homology and Modular Evolution of CATCHR at the Origin of the Eukaryotic Endomembrane System	10
Consequences of Cryopreservation in Diverse Natural Isolates of Saccharomyces cerevisiae	10
Transcriptomic Signatures of Ageing Vary in Solitary and Social Forms of an Orchid Bee	10
A Naturally Heteroplasmic Clam Provides Clues about the Effects of Genetic Bottleneck on Paternal mtDNA	10
Taxonomic Uncertainty and the Anomaly Zone: Phylogenomics Disentangle a Rapid Radiation to Resolve Contentious Species (Gila robustaComplex) in the Colorado River	10
ΦX174 Attenuation by Whole-Genome Codon Deoptimization	9
Convergent Evolution and Structural Adaptation to the Deep Ocean in the Protein-Folding Chaperonin CCTα	9
Mutational Pressure Drives Differential Genome Conservation in Two Bacterial Endosymbionts of Sap-Feeding Insects	9
Chromosome-Level Genome Assembly of the Green Peafowl (Pavo muticus)	9
Phylogenomic Analyses of 2,786 Genes in 158 Lineages Support a Root of the Eukaryotic Tree of Life between Opisthokonts and All Other Lineages	9
The Missing Expression Level–Evolutionary Rate Anticorrelation in Viruses Does Not Support Protein Function as a Main Constraint on Sequence Evolution	9
Tracing the Evolution of Human Gene Regulation and Its Association with Shifts in Environment	9