Genome Biology and Evolution

Article	Citations
Population Genomics of Japanese Macaques (Macaca fuscata): Insights Into Deep Population Divergence and Multiple Merging Histories	117
Technological Development and Advances for Constructing and Analyzing Plant Pangenomes	100
Discovery of New Genomic Configuration of Mating-Type Loci in the Largest Lineage of Lichen-Forming Fungi	65
Ancient Sheep Genomes Reveal Four Millennia of North European Short-Tailed Sheep in the Baltic Sea Region	64
The Nitroplast and Its Relatives Support a Universal Model of Features Predicting Gene Retention in Endosymbiont and Organelle Genomes	60
Exploring the Natural Origins of SARS-CoV-2 in the Light of Recombination	50
Whole-Genome Sequences of Two Kazachstania barnettii Strains Isolated from Anthropic Environments	48
Filtration of Gene Trees From 9,000 Exons, Introns, and UCEs Disentangles Conflicting Phylogenomic Relationships in Tree Frogs (Hylidae)	45
Comprehensive Phylogenomics of Methylobacterium Reveals Four Evolutionary Distinct Groups and Underappreciated Phyllosphere Diversity	43
A Simulation Framework for Modeling the Within-Patient Evolutionary Dynamics of SARS-CoV-2	42
Myxozoans (Cnidaria) do not Retain Key Oxygen-Sensing and Homeostasis Toolkit Genes	42
Ohnologs and SSD Paralogs Differ in Genomic and Expression Features Related to Dosage Constraints	41
Nuclear and Mitochondrial Genome Assemblies for the Endangered Wood-Decaying Fungus Somion occarium	40
“Correcting” Gene Trees to be More Like Species Trees Frequently Increases Topological Error	40
Multiple Domestication Centers of the Indian Pig Population	39
Divergence in theSaccharomycesSpecies’ Heat Shock Response Is Indicative of Their Thermal Tolerance	37
Does Effective Population Size Govern Evolutionary Differences in Telomere Length?	35
Genome Evolution and Introgression in the New Zealand mud Snails Potamopyrgus estuarinus and Potamopyrgus kaitunuparaoa	33
Diversity of Sex Chromosomes in Vertebrates: Six Novel Sex Chromosomes in Basal Haplochromines (Teleostei: Cichlidae)	32
OrthoPhy: A Program to Construct Ortholog Data Sets Using Taxonomic Information	31
Palaeognaths Reveal Evolutionary Ancestry of the Avian Major Histocompatibility Complex Class II	31
Egg Yolk Protein Homologs Identified in Live-Bearing Sharks: Co-Opted in the Lecithotrophy-to-Matrotrophy Shift?	31
Impact of Phylogenetic Method Choice on Indel Analyses in HIV-1 Subtype B	31
Genetic Analysis of Mingrelians Reveals Long-Term Continuity of Populations in Western Georgia (Caucasus)	30
Genealogical Analyses of 3 Cultivated and 1 Wild Specimen of Vitis vinifera from Greece	29

High Polymorphism Levels of De Novo ORFs in a Yoruba Human Population	29
Evolution of Plant Conserved microRNAs After Whole-Genome Duplications	29
Genomic Resources and Annotations for a Colonial Ascidian, the Light-Bulb Sea Squirt Clavelina lepadiformis	28
Correction to: Genome-Scale Data Reveal Deep Lineage Divergence and a Complex Demographic History in the Texas Horned Lizard (Phrynosoma cornutum) throughout the Southwestern and Central United	27
Highlight: Gene Cluster Reshuffling Drives Natural Sunscreen Evolution in Lichens	27
Mitonuclear Coevolution in Bumblebees (Bombus): Genomic Signatures and Its Role in Climatic Niche Adaptation	27
Cis-regulatory Variation in Relation to Sex and Sexual Dimorphism in Drosophila melanogaster	26
A Chromosome-Level Genome Assembly ofToona ciliata(Meliaceae)	26
Analysis of Sex Chromosome Evolution in the Clade Palaeognathae from Phased Genome Assembly	25
Genome Dynamics and Temperature Adaptation During Experimental Evolution of Obligate Intracellular Bacteria	25
Highlight: Epigenetics HelpHydraGet Ahead	25
Analyses of Transposable Elements in Arbuscular Mycorrhizal Fungi Support Evolutionary Parallels With Filamentous Plant Pathogens	24
New Genome Assemblies for Poeciliidae: A Foundation for Adaptation Studies	24
T Residues Preceded by Runs of G Are Hotspots of T→G Mutation in Bacteria	24
Calling Structural Variants with Confidence from Short-Read Data in Wild Bird Populations	23
Genomic Insights into Fertilization: Tracing PLCZ1 Orthologs Across Amphibian Lineages	23
Fine-Scale Map Reveals Highly Variable Recombination Rates Associated with Genomic Features in the Eurasian Blackcap	23
Corrigendum to: Intraspecific Transcriptome Variation and Sex-Biased Expression in Anopheles Arabiensis	23
Evolution of the Growth Hormone Gene Duplication in Passerine Birds	23
Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826T, a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer	22
Genetic Drift and Host-Adaptive Features Likely Underlie the Cladogenesis of Insect-Associated Lachnospiraceae	22
Complete Genome Sequencing of a NovelGloeobacterSpecies from a Waterfall Cave in Mexico	22
Population Genetics of Reproductive Genes in Haplodiploid Species	22
Chromosome-Level Genome Assembly of the Viviparous Eelpout Zoarces viviparus	21
On the Origin and Evolution of Microbial Mercury Methylation	21
Editor's Note on: Can a Y chromosome degenerate in an evolutionary instant? A commentary on Fong et al. 2023	21
Genetic Signatures of Positive Selection in Human Populations Adapted to High Altitude in Papua New Guinea	21
Highlight: Tardigrades and the Science of Extreme Survival	21
Parallel Independent Losses of G-Type Lysozyme Genes in Hairless Aquatic Mammals	20
Erratum to: Genomic analyses unveil helmeted guinea fowl (Numida meleagris) domestication in West Africa	20
The Evolution of Comparative Phylogeography: Putting the Geography (and More) into Comparative Population Genomics	20
Extensive Recombination-driven Coronavirus Diversification Expands the Pool of Potential Pandemic Pathogens	19
De Novo Genome Assemblies From Two Indigenous Americans from Arizona Identify New Polymorphisms in Non-Reference Sequences	19
Genome-wide Evidence of Host Specialization in Wild and Farmland Populations of the Fungal Leaf Spot Pathogen, Cercospora beticola	19
The Evolution and Characterization of the RNA Interference Pathways in Lophotrochozoa	19
Comparative Analysis of Transposable Element Evolution in Crustaceans	19
Erratum to: The Transposable Element Environment of Human Genes Differs According to Their Duplication Status and Essentiality	19
A High Frequency of Chromosomal Duplications in Unicellular Algae Is Compensated by Translational Regulation	19
Highlight: The Surprising Endurance of DNA's Smallest Repeats	19
ZW Sex Chromosome Differentiation in Palaeognathous Birds Is Associated with Mitochondrial Effective Population Size but Not Mitochondrial Genome Size or Mutation Rate	19
Genomic Adaptations to an Endoparasitic Lifestyle in the Morphologically Atypical CrustaceanSacculina carcini(Cirripedia: Rhizocephala)	19
The Structure of Simple Satellite Variation in the Human Genome and Its Correlation With Centromere Ancestry	18
Genomic Data Reveal Diverse Biological Characteristics of Scleractinian Corals and Promote Effective Coral Reef Conservation	18
Chromosome-Scale Genomes of the Flightless Caterpillar Hunter Beetles Calosoma tepidum and Calosoma wilkesii From British Columbia (Coleoptera: Carabidae)	18
Evolution of an Alternative Genetic Code in the Providencia Symbiont of the Hematophagous Leech Haementeria acuecueyetzin	18
Parameter Scaling in Population Genetics Simulations may Introduce Unintended Background Selection: Considerations for Scaled Simulation Design	18
It Took Me a While to Figure out What Science I Really Wanted to Do	18
Alternative Mutational Architectures Producing Identical M-Matrices can Lead to Different Patterns of Evolutionary Divergence	17
ORFans in Mitochondrial Genomes of Marine Polychaete Polydora	17
Haplotype-Resolved, Chromosome-Level Assembly of White Clover (Trifolium repens L., Fabaceae)	17

Challenges in Assembling the Dated Tree of Life	17
Emilia Huerta-Sanchez	17
Examining the Effects of Hibernation on Germline Mutation Rates in Grizzly Bears	17
Highlight: Unraveling the Origins of LUCA and LECA on the Tree of Life	17
Convergent Evolution and Predictability of Gene Copy Numbers Associated with Diets in Mammals	17
Cytogenetic Analysis of the Fish Genus Carassius Indicates Divergence, Fission, and Segmental Duplication as Drivers of Tandem Repeat and Microchromosome Evolution	17
Signatures of Selection on Mitonuclear Integrated Genes Uncover Hidden Mitogenomic Variation in Fur Seals	17
Global Emergence and Dissemination of Neisseria gonorrhoeae ST-9363 Isolates with Reduced Susceptibility to Azithromycin	17
Selection on the Fly: Short-Term Adaptation to an Altered Sexual Selection Regime inDrosophila pseudoobscura	17
Where Are the Formerly Y-linked Genes in the Ryukyu Spiny Rat that has Lost its Y Chromosome?	17
Conserved Noncoding Elements Evolve Around the Same Genes Throughout Metazoan Evolution	17
Comparative Analysis of Mitochondrial Genomes in Gryllidea (Insecta: Orthoptera): Implications for Adaptive Evolution in Ant-Loving Crickets	17
Impact of Heat Stress on Transposable Element Expression and Derived Small RNAs in Drosophila subobscura	16
Paralogous Gene Recruitment in Multiple Families Constitutes Genetic Architecture and Robustness of Pod Dehiscence in Legumes	16
Characterization of Single-Cell Cis-regulatory Elements Informs Implications for Cell Differentiation	16
Extensive Loss and Gain of Conserved Noncoding Elements During Early Teleost Evolution	16
Chromosome-Level Assemblies of Three Candidatus Liberibacter solanacearum Vectors: Dyspersa apicalis (Förster, 1848), Dyspersa pallida (Burckhardt, 1986), and Trioza urticae	16
High Stability of the Epigenome inDrosophilaInterspecific Hybrids	16
A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern	16
The Birth-and-Death Evolution of Cytochrome P450 Genes in Bees	16
Discovery of Paralogous GnRH and Corazonin Signaling Systems in an Invertebrate Chordate	16
Unveiling the Virome of Wild Birds: Exploring CRESS-DNA Viral Dark Matter	16
Exploring the Relationship Between Gene Expression and Low-Frequency Somatic Mutations in Arabidopsis with Duplex Sequencing	16
Comparative Population Genomics of Cryptic Speciation and Adaptive Divergence in Bicknell’s and Gray-Cheeked Thrushes (Aves:Catharus bicknelliandCatharus minimus)	16
The “Bipartite” Structure of the First Genome of Ampelomyces quisqualis, a Common Hyperparasite and Biocontrol Agent of Powdery Mildews, May Point to Its Evolutionary Origin from Plant Pathogen	16
Ubiquity and Origins of Structural Maintenance of Chromosomes (SMC) Proteins in Eukaryotes	15
Genomic Sequence and Transcriptome Analysis of the Medicinal Fungus Keithomyces neogunnii	15
Nanopore Sequencing of Amoebophrya Species Reveals Novel Collection of Bacteria Putatively Associated With Karlodinium veneficum	15
Accurate Detection of Convergent Mutations in Large Protein Alignments With ConDor	15
Small but Mitey: A Gapless Telomere-to-Telomere Assembly of an Unidentified Mite With a Streamlined Genome	15
Diverse Gene Regulatory Mechanisms Alter Rattlesnake Venom Gene Expression at Fine Evolutionary Scales	15
Nonsystematic Reporting Biases of the SARS-CoV-2 Variant Mu Could Impact Our Understanding of the Epidemiological Dynamics of Emerging Variants	15
Convergent Evolution Has Led to the Loss of Claw Proteins in Snakes and Worm Lizards	15
Chromosome-Scale Genome Assembly and Annotation of Allotetraploid Annual Bluegrass (Poa annua L.)	15
Population Genomics of Giant Mice from the Faroe Islands: Hybridization, Colonization, and a Novel Challenge to Identifying Genomic Targets of Selection	15
Low Mutation Rate and Atypical Mutation Spectrum in Prasinoderma coloniale: Insights From an Early Diverging Green Lineage	15
Size Matters: Genome Size Dynamics Driven by Copy Number Variation in a Green Alga	15
Evolution of Transient Receptor Potential (TRP) Ion Channels in Antarctic Fishes (Cryonotothenioidea) and Identification of Putative Thermosensors	15
Linked-Read Sequencing of Eight Falcons Reveals a Unique Genomic Architecture in Flux	15
Lessons from Extremophiles: Functional Adaptations and Genomic Innovations across the Eukaryotic Tree of Life	15
Novel High-Quality Amoeba Genomes Reveal Widespread Codon Usage Mismatch Between Giant Viruses and Their Hosts	15
Highlight: Microbial Manipulators of Insect Sexual Reproduction	15
Inferring the Selective History of CNVs Using a Maximum Likelihood Model	14
Selection and Gene Duplication Associated With High-Elevation Diversification in Pristimantis, the Largest Terrestrial Vertebrate Genus	14
Can a Y Chromosome Degenerate in an Evolutionary Instant? A Commentary on Fong et al. 2023	14
The Impact of Sample Size and Population History on Observed Mutational Spectra: A Case Study in Human and Chimpanzee Populations	14
Evolutionary Genomics of Sister Species Differing in Effective Population Sizes and Recombination Rates	14
Genomic Signatures of a Major Adaptive Event in the Pathogenic Fungus Melampsora larici-populina	14
Adaptive Potential of Epigenetic Switching During Adaptation to Fluctuating Environments	14
Cell Compartment is a Predictor of Protein Rate of Evolution, but not in the Manner Expected: Evidence Against the Extended Complexity Hypothesis	14
Genome-Wide Demographic Analyses of Balaenid Whales Revealed Complex History of Gene Flow Associated with Past Climate Oscillation	14
Arthropod Phylotranscriptomics With a Special Focus on the Basal Phylogeny of the Myriapoda	14
Genome-Scale Data Reveal Deep Lineage Divergence and a Complex Demographic History in the Texas Horned Lizard (Phrynosoma cornutum) throughout the Southwestern and Central United States	13
Sexual Antagonism and Sex Determination in Three Syngnathid Species Alongside a Male Pregnancy Gradient	13
The Effect of the Presence and Absence of DNA Repair Genes on the Rate and Pattern of Mutation in Bacteria	13
Genetic Diversity in Chimpanzee Transcriptomics Does Not Represent Wild Populations	13
Emerging SARS-CoV-2 Diversity Revealed by Rapid Whole-Genome Sequence Typing	13
Domestication Reduces Plant Immune Receptor Gene Repertoires Across Lineages	13
Correction to: Editorial 2024	12
Draft Genome of Akame (Lates Japonicus) Reveals Possible Genetic Mechanisms for Long-Term Persistence and Adaptive Evolution with Low Genetic Diversity	12
Chromosome-Level Genome Assemblies of Two Hypnales (Mosses) Reveal High Intergeneric Synteny	12
Genome-Scale Analysis Reveals Extensive Diversification of Voltage-Gated K+ Channels in Stem Cnidarians	12
Infections by Transovarially Transmitted DMelSV in Drosophila Have No Impact on Ovarian Transposable Element Transcripts but Increase Their Amounts in the Soma	12
Examining the Effects of Temperature on the Evolution of Bacterial tRNA Pools	12
Making a Pathogen? Evaluating the Impact of Protist Predation on the Evolution of Virulence in Serratia marcescens	12
Gene Duplication, Shifting Selection, and Dosage Balance of Silicon Transporter Proteins in Marine and Freshwater Diatoms	12
Chromosome-Scale Assembly of Capsella orientalis, Maternal Progenitor of Cosmopolitan Allotetraploid C. bursa-pastoris	12
Experimental Evaluation of a Direct Fitness Effect of the De Novo Evolved Mouse Gene Pldi	12
High-Resolution Estimates of Crossover and Noncrossover Recombination from a Captive Baboon Colony	12
Discovering Intron Gain Events in Humans Through Large-Scale Evolutionary Comparisons	12
Comparative Population Genomics of Arctic Sled Dogs Reveals a Deep and Complex History	12
Genetic Variation in Jamaican Populations of the Coffee Berry Borer, Hypothenemus hampei	12
The Legacy of Infectious Disease Exposure on the Genomic Diversity of Indigenous Southern Mexicans	12
Ancient Loss of Catalytic Selenocysteine Spurred Convergent Adaptation in a Mammalian Oxidoreductase	12
Sequencing Bait: Nuclear and Mitogenome Assembly of an Abundant Coastal Tropical and Subtropical Fish,Atherinomorus stipes	12
A Genome for Edith’s Checkerspot Butterfly: An Insect with Complex Host-Adaptive Suites and Rapid Evolutionary Responses to Environmental Changes	12
The Effect of Methodological Considerations on the Construction of Gene-Based Plant Pan-genomes	12
Plethora of New Marsupial Genomes Informs Our Knowledge of Marsupial MHC Class II	12
Mitochondrial Variation in Anopheles gambiae and Anopheles coluzzii: Phylogeographic Legacy and Mitonuclear Associations With Metabolic Resistance to Pathogens and Insecticides	12
Populations, Traits, and Their Spatial Structure in Humans	12

Examination of Gene Loss in the DNA Mismatch Repair Pathway and Its Mutational Consequences in a Fungal Phylum	12
Elucidating the Molecular Mechanisms of Sex Ratio Distortion Mediated by Cytoplasmic Symbionts	12
Opportunistic Bacteria of Grapevine Crown Galls Are Equipped with the Genomic Repertoire for Opine Utilization	12
Mitogenomics and mitochondrial gene phylogeny decipher the evolution ofSaccharomycotinayeasts	12
LukProt: A Database of Eukaryotic Predicted Proteins Designed for Investigations of Animal Origins	12
Modeling Substitution Rate Evolution across Lineages and Relaxing the Molecular Clock	11
Conserved Genes in Highly Regenerative Metazoans Are Associated with Planarian Regeneration	11
Small genome size ensures adaptive flexibility for an alpine ginger	11
Rapid Adaptation Often Occurs through Mutations to the Most Highly Conserved Positions of the RNA Polymerase Core Enzyme	11
The First Annotated Genome Assembly of Macrophomina tecta Associated with Charcoal Rot of Sorghum	11
Telomere-to-telomere Genome Assembly of the Clubroot Pathogen Plasmodiophora Brassicae	11
Potential Role of DNA Methylation as a Driver of Plastic Responses to the Environment Across Cells, Organisms, and Populations	11
Chromosome Structural Rearrangements in Invasive Haplodiploid Ambrosia Beetles Revealed by the Genomes of Euwallacea fornicatus (Eichhoff) and Euwallacea similis (Ferrari) (Coleoptera, C	11
C. Brandon Ogbunu(gafor)	11
Epigenetic and Genetic Population Structure is Coupled in a Marine Invertebrate	11
Genome Assembly of the Nematode Rhabditoides Inermis From a Complex Microbial Community	11
Chromosome-Level Assembly and Annotation of the Genome of the Endangered Giant Patagonian Bumble Bee Bombus dahlbomii	11
Epigenetic and Genetic Differentiation Between Coregonus Species Pairs	11
Divergence and Selection in a Cryptic Species Complex (Geonoma undata: Arecaceae) in the Northern Andes of Colombia	11
Clustering of Sex-Biased Genes and Transposable Elements in the Genome of the Medaka FishOryzias latipes	11
Comparing Small and Large Genomes Within Monogonont Rotifers	11
The Genome of Plasmodium gonderi: Insights into the Evolution of Human Malaria Parasites	11
Hawaiian Nysius Insects Rely on an Obligate Symbiont with a Reduced Genome That Retains a Discrete Nutritional Profile to Match Their Plant Seed Diet	11
RNA-sequencing Analysis of Hybrid Females Reveals a Dominance of Expression of Alleles From Outcrossing Species Over Those From Selfing Species	10
Phylogenomic Analyses of 2,786 Genes in 158 Lineages Support a Root of the Eukaryotic Tree of Life between Opisthokonts and All Other Lineages	10
Contrasting Genomic Evolution Between Domesticated and WildKluyveromyces lactisYeast Populations	10
Insertion–Deletion Events Are Depleted in Protein Regions with Predicted Secondary Structure	10
THI1 Gene Evolutionary Trends: A Comprehensive Plant-Focused Assessment via Data Mining and Large-Scale Analysis	10
Tracing the Evolution of Human Gene Regulation and Its Association with Shifts in Environment	10
Duplications and Retrogenes Are Numerous and Widespread in Modern Canine Genomic Assemblies	10
Tracing Homopolymers in Oikopleura dioica's Mitogenome	10
Chromosome-Level Genome Assembly of the Green Peafowl (Pavo muticus)	10
How Sequence Context-Dependent Mutability Drives Mutation Rate Variation in the Genome	10
Evolution of Metabolome and Transcriptome Supports a Hierarchical Organization of Adaptive Traits	10
Contrasting Modes of Mitochondrial Genome Evolution in Sister Taxa of Wood-Eating Marine Bivalves (Teredinidae and Xylophagaidae)	10
Phylotranscriptomic Analyses of Mycoheterotrophic Monocots Show a Continuum of Convergent Evolutionary Changes in Expressed Nuclear Genes From Three Independent Nonphotosynthetic Lineages	10
Nucleotide Usage Biases Distort Inferences of the Species Tree	10
Whole-Genome Duplications and the Diversification of the Globin-X Genes of Vertebrates	10
History of Diversification and Adaptation from North to South Revealed by Genomic Data: Guanacos from the Desert to Sub-Antarctica	10
Chromosome-Scale Genome Assembly of the Solitary Parasitoid Wasp Microplitis manilae Ashmead, 1904 (Braconidae: Microgastrinae)	10
Horizontal Transfer of Microbial Toxin Genes to Gall Midge Genomes	10
Aminoacyl-tRNA Synthetase Evolution within the Dynamic Tripartite Translation System of Plant Cells	10
Assessing the Presence of Recent Adaptation in the Human Genome With Mixture Density Regression	10
Alternative Modes of Introgression-Mediated Selection Shaped Crop Adaptation to Novel Climates	10
Campylobacter fetus Plasmid Diversity: Comparative Analysis of Fully Sequenced Plasmids and Proposed Classification Scheme	10
Flatworm Transcriptomes Reveal Widespread Parasitism by Histophagous Ciliates	10
De Novo Genome Assembly and Annotation for the Synanthropic Webbing Clothes Moth (Tineola bisselliella): A Globally Distributed, Economically Important Pest	10
Phylogeny and Expansion of Serine/Threonine Kinases in Phagocytotic Bacteria in the Phylum Planctomycetota	9
Inside the Shark Nursery: The Evolution of Live Birth in Cartilaginous Fish	9
Chromosome-Level Genome Assembly of the Australian Rainforest Tree Rhodamnia argentea (Malletwood)	9
The Site/Group Extended Data Format and Tools	9
The Linkage-Disequilibrium and Recombinational Landscape in Daphnia pulex	9
Rel/NF-κB Transcription Factors Emerged at the Onset of Opisthokonts	9
TIdeS: A Comprehensive Framework for Accurate Open Reading Frame Identification and Classification in Eukaryotic Transcriptomes	9
Selection Shapes the Genomic Landscape of Introgressed Ancestry in a Pair of Sympatric Sea Urchin Species	9
Structural Enzymology, Phylogenetics, Differentiation, and Symbolic Reflexivity at the Dawn of Biology	9
Brain Gene Expression of Foraging Behavior and Social Environment inCeratina calcarata	9
Exploring the Relationship of Transposable Elements and Ageing: Causes and Consequences	9
Comparative Genomics Reveals Intra and Inter Species Variation in the Pathogenic Fungus Batrachochytrium dendrobatidis	9
Dynamic Birth and Death of Argonaute Gene Family Functional Repertoire Across Caenorhabditis Nematodes	9
Gene Loss may have Shaped the Cnidarian and Bilaterian Hox and ParaHox Complement	9
Molecular Basis of Eusocial Complexity: The Case of Worker Reproductivity in Bees	9
Segregating Complete Tf2 Elements Are Largely Neutral in Fission Yeast	9
Comprehensive Transcriptome Sequencing of Tanaidacea with Proteomic Evidences for Their Silk	9
Habitat-associated Genomic Variation in a Wall Lizard from an Oceanic Island	9
A Machine Learning Framework Identifies Plastid-Encoded Proteins Harboring C3 and C4 Distinguishing Sequence Information	9
Inferring the Demographic History of Aye-Ayes (Daubentonia madagascariensis) from High-Quality, Whole-Genome, Population-Level Data	9
The Early Evolution of Tudor Genes in Holozoa and How Their Distribution Was Influenced by Life History Traits in Metazoa	9
A Short-Term View of Protein Sequence Evolution from Salmonella	9
Dollo Parsimony Overestimates Ancestral Gene Content Reconstructions	9
Functional Compensation of Mouse Duplicates by their Paralogs Expressed in the Same Tissues	9
Chromosomal-Level Genome Assembly of the SpringtailTomocerus qinae(Collembola: Tomoceridae)	9
Re-examining Correlations Between Synonymous Codon Usage and Protein Bond Angles in Escherichia coli	9
Chromosome-Level Genome Assembly of the Asian Tramp Snail Bradybaena similaris (Stylommatophora: Camaenidae)	9
Monodopsis and Vischeria Genomes Shed New Light on the Biology of Eustigmatophyte Algae	9
Replication-Dependent Organization Constrains Positioning of Long DNA Repeats in Bacterial Genomes	9
Cell Type Resolved Expression of Duplicate Genes Retained From Whole Genome Duplication in Atlantic salmon	8
Chromosome-Level Genome Assembly and Annotation of Corallium rubrum: A Mediterranean Coral Threatened by Overharvesting and Climate Change	8
Mutational Signatures in Wild Type Escherichia coli Strains Reveal Predominance of DNA Polymerase Errors	8
Six Newly Sequenced Chloroplast Genomes From Quadriflagellate Chlamydomonadales (Chlorophyceae): Phylogeny and Comparative Genome Analyses	8
De Novo Long-Read Genome Assembly and Annotation of the Mosquito Gut-Dwelling Fungus, Smittium minutisporum	8
The First De Novo HiFi Genome Assemblies for Three Clownfish-hosting Sea Anemone Species (Anthozoa: Actiniaria)	8
A Chromosome-Level Genome Assembly and Annotation for theOecanthus rufescens(Orthoptera: Oecanthidae)	8
Maturases and Group II Introns in the Mitochondrial Genomes of the Deepest Jakobid Branch	8
scRNA-seq Reveals Novel Genetic Pathways and Sex Chromosome Regulation in Tribolium Spermatogenesis	8
IRplus: An Augmented Tool to Detect Inverted Repeats in Plastid Genomes	8
Genome Assembly and Population Sequencing Reveal Three Populations and Signatures of Insecticide Resistance ofTuta absolutain Latin America	8
The Evolution of Widespread Recombination Suppression on the Dwarf Hamster (Phodopus) X Chromosome	8
Evaluating the Performance of Widely Used Phylogenetic Models for Gene Expression Evolution	8
Convergent Evolution in a Murine Intestinal Parasite Rapidly Created the TGM Family of Molecular Mimics to Suppress the Host Immune Response	8
Pseudomonas putida Dynamics of Adaptation under Prolonged Resource Exhaustion	8
MATEdb2, a Collection of High-Quality Metazoan Proteomes across the Animal Tree of Life to Speed Up Phylogenomic Studies	8
Pervasive Mitochondrial tRNA Gene Loss in Clade B of Haplosclerid Sponges (Porifera, Demospongiae)	8
Reduced Efficacy of Selection on a Young Z Chromosome Region of Schistosoma japonicum	8
Chromosome-level Genome of the Muskrat (Ondatra zibethicus)	8