Genome Biology and Evolution

Article	Citations
Highlight—Epigenetics Virtual Issue: New Findings Amid Old Controversies	105
Multiple Domestication Centers of the Indian Pig Population	103
Transcriptomic Data Reveal Divergent Paths of Chitinase Evolution Underlying Dietary Convergence in Anteaters and Pangolins	96
Tandem Repeats Provide Evidence for Convergent Evolution to Similar Protein Structures	87
The Chromosome-level Genome of the Ctenophore Mnemiopsis leidyi A. Agassiz, 1865 Reveals a Unique Immune Gene Repertoire	81
Protein Quality Control is a Master Modulator of Molecular Evolution in Bacteria	59
Evolutionary and Functional Analysis of Monoamine Oxidase F: A Novel Member of the Monoamine Oxidase Gene Family	50
Erratum to: Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation	46
Correction to: Replication-Dependent Organization Constrains Positioning of Long DNA Repeats in Bacterial Genomes	42
Horizontal Transfer and Recombination Fuel Ty4 Retrotransposon Evolution in Saccharomyces	41
Population Genomics of Japanese Macaques (Macaca fuscata): Insights Into Deep Population Divergence and Multiple Merging Histories	39
Chromosomal-Level Reference Genome of the Neotropical Tree Jacaranda mimosifolia D. Don	38
Nuclear and Mitochondrial Genome Assemblies for the Endangered Wood-Decaying Fungus Somion occarium	38
Hawaiian Nysius Insects Rely on an Obligate Symbiont with a Reduced Genome That Retains a Discrete Nutritional Profile to Match Their Plant Seed Diet	37
Correction to: Genome-Scale Data Reveal Deep Lineage Divergence and a Complex Demographic History in the Texas Horned Lizard (Phrynosoma cornutum) throughout the Southwestern and Central United	37
The Transposable Element Environment of Human Genes Differs According to Their Duplication Status and Essentiality	36
Adaptive Evolution in TRIF Leads to Discordance between Human and Mouse Innate Immune Signaling	36
Chromosome-Level Genome Assembly of the Green Peafowl (Pavo muticus)	35
Correction to: Strong Parallel Differential Gene Expression Induced by Hatchery Rearing Weakly Associated with Methylation Signals in Adult Coho Salmon (O. kisutch)	35
Correction to: Nudivirus Remnants in the Genomes of Arthropods	34
De Novo-Whole Genome Assembly of the Roborovski Dwarf Hamster (Phodopus roborovskii) Genome: An Animal Model for Severe/Critical COVID-19	30
Correction to: Chromosome-Level Assemblies of the Pieris mannii Butterfly Genome Suggest Z-Origin and Rapid Evolution of the W Chromosome	30
Satellite-Like W-Elements: Repetitive, Transcribed, and Putative Mobile Genetic Factors with Potential Roles for Biology and Evolution of Schistosoma mansoni	30
New Perspectives on the Evolution of Within-Individual Genome Variation and Germline/Soma Distinction	30
Genome Sequence ofElaeagnus mollis, the First Chromosome-Level Genome of the Family Elaeagnaceae	28

Epigenetic and Genetic Population Structure is Coupled in a Marine Invertebrate	28
Rapid Adaptation Often Occurs through Mutations to the Most Highly Conserved Positions of the RNA Polymerase Core Enzyme	27
Discovery of New Genomic Configuration of Mating-Type Loci in the Largest Lineage of Lichen-Forming Fungi	27
Shared Patterns of Gene Expression and Protein Evolution Associated with Adaptation to Desert Environments in Rodents	27
Phylotranscriptomic Analyses of Mycoheterotrophic Monocots Show a Continuum of Convergent Evolutionary Changes in Expressed Nuclear Genes From Three Independent Nonphotosynthetic Lineages	26
Strong Parallel Differential Gene Expression Induced by Hatchery Rearing Weakly Associated with Methylation Signals in Adult Coho Salmon (O. kisutch)	26
High-Quality Reference Genome for an Arid-Adapted Mammal, the Banner-Tailed Kangaroo Rat (Dipodomys spectabilis)	26
Transcription, mRNA Export, and Immune Evasion Shape the Codon Usage of Viruses	26
Evolution of Bacterial Interspecies Hybrids with Enlarged Chromosomes	26
Gene Structure-Based Homology Search Identifies Highly Divergent Putative Effector Gene Family	25
Evaluating Causes of Current Genetic Gradients of Modern Humans of the Iberian Peninsula	25
Seascape Genomics and Phylogeography of the Sailfish (Istiophorus platypterus)	25
Contrasting Modes of Mitochondrial Genome Evolution in Sister Taxa of Wood-Eating Marine Bivalves (Teredinidae and Xylophagaidae)	25
Highlight: Gene Cluster Reshuffling Drives Natural Sunscreen Evolution in Lichens	25
A Chromosome—Level Genome Assembly of the Spotted Scat (Scatophagus argus)	24
Origins and Evolution of Human Tandem Duplicated Exon Substitution Events	24
The First Annotated Genome Assembly of Macrophomina tecta Associated with Charcoal Rot of Sorghum	24
Ultralong Oxford Nanopore Reads Enable the Development of a Reference-Grade Perennial Ryegrass Genome Assembly	24
The Effect of Developmental Pleiotropy on the Evolution of Insect Immune Genes	24
Origin and Evolution of the Cannabinoid Oxidocyclase Gene Family	23
The Presence of Ancient Core Genes Reveals Endogenization from Diverse Viral Ancestors in Parasitoid Wasps	23
Near-Chromosomal-Level Genome Assembly of the Sea Urchin Echinometra lucunter, a Model for Speciation in the Sea	22
Unsupervised Deep Learning Can Identify Protein Functional Groups from Unaligned Sequences	22
Comparative Genomics of the World's Smallest Mammals Reveals Links to Echolocation, Metabolism, and Body Size Plasticity	22
Evolution of the Insect PPK Gene Family	22
Flatworm Transcriptomes Reveal Widespread Parasitism by Histophagous Ciliates	21
Tracing the Evolution of Human Gene Regulation and Its Association with Shifts in Environment	21
Duplications and Retrogenes Are Numerous and Widespread in Modern Canine Genomic Assemblies	21
Patterns of Genomic Diversity in a Fig-Associated Close Relative of Caenorhabditis elegans	21
Fundamental Patterns of Structural Evolution Revealed by Chromosome-Length Genomes of Cactophilic Drosophila	20
Genome Assembly and Annotation of the Dark-Branded Bushbrown Butterfly Mycalesis mineus (Nymphalidae: Satyrinae)	20
The Nitroplast and Its Relatives Support a Universal Model of Features Predicting Gene Retention in Endosymbiont and Organelle Genomes	20
Parthenogenetic Stick Insects Exhibit Signatures of Preservation in the Molecular Architecture of Male Reproduction	20
No Signs of Adaptations for High Flight Intensity in the Mitochondrial Genome of Birds	20
Cis-regulatory Variation in Relation to Sex and Sexual Dimorphism in Drosophila melanogaster	20
Chromosome-Level Assembly and Annotation of the Genome of the Endangered Giant Patagonian Bumble Bee Bombus dahlbomii	20
Unraveling the Molecular Basis of Stabilizing Selection by Experimental Evolution	20
A Small Genome amidst the Giants: Evidence of Genome Reduction in a Small Tubulinid Free-Living Amoeba	20
Chromosome Structural Rearrangements in Invasive Haplodiploid Ambrosia Beetles Revealed by the Genomes of Euwallacea fornicatus (Eichhoff) and Euwallacea similis (Ferrari) (Coleoptera, C	20
Filtration of Gene Trees From 9,000 Exons, Introns, and UCEs Disentangles Conflicting Phylogenomic Relationships in Tree Frogs (Hylidae)	19
ADAR Editing in Viruses: An Evolutionary Force to Reckon with	19
A Reference Genome Assembly for the Spotted Flycatcher (Muscicapa striata)	19
A Long-Standing Hybrid Population Between Pacific and Atlantic Herring in a Subarctic Fjord of Norway	19
Genetic Analysis of Mingrelians Reveals Long-Term Continuity of Populations in Western Georgia (Caucasus)	19
Breaking Genetic Barriers: Understanding the Limits of Horizontal Gene Transfer	19
Tracing Homopolymers in Oikopleura dioica's Mitogenome	19
Evolution of Metabolome and Transcriptome Supports a Hierarchical Organization of Adaptive Traits	19
Signatures of Extreme Longevity: A Perspective from Bivalve Molecular Evolution	19
Patchy Distribution of GTPases of Immunity-Associated Proteins (GIMAP) within Cnidarians and Dinoflagellates Suggests a Complex Evolutionary History	18
Phylogenomics of the Ecdysteroid Kinase-like (EcKL) Gene Family in Insects Highlights Roles in Both Steroid Hormone Metabolism and Detoxification	18

Chromosome-Level Assemblies of the Pieris mannii Butterfly Genome Suggest Z-Origin and Rapid Evolution of the W Chromosome	18
Genomic Divergence and the Evolution of Ecotypes in Bottlenose Dolphins (Genus Tursiops)	18
Single-Cell RNA Sequencing Reveals Microevolution of the Stickleback Immune System	18
Enrichment of Non-B-Form DNA at D. melanogaster Centromeres	18
Assessing the Presence of Recent Adaptation in the Human Genome With Mixture Density Regression	18
Divergence in theSaccharomycesSpecies’ Heat Shock Response Is Indicative of Their Thermal Tolerance	18
OrthoPhy: A Program to Construct Ortholog Data Sets Using Taxonomic Information	17
Ohnologs and SSD Paralogs Differ in Genomic and Expression Features Related to Dosage Constraints	17
Impacts of Sex Ratio Meiotic Drive on Genome Structure and Function in a Stalk-Eyed Fly	17
The Rhodoexplorer Platform for Red Algal Genomics and Whole-Genome Assemblies for Several Gracilaria Species	17
40th Anniversary Virtual Issues: F-statistics and Population Structure	17
DNA Transposons Favor De Novo Transcript Emergence Through Enrichment of Transcription Factor Binding Motifs	17
Retention of an Endosymbiont for the Production of a Single Molecule	17
Early Divergence and Gene Exchange Highways in the Evolutionary History of Mesoaciditogales	17
Large Phylogenomic Data sets Reveal Deep Relationships and Trait Evolution in Chlorophyte Green Algae	17
Chromosome-Level Genome Assembly for the Angiosperm Silene conica	17
Genomic Resources and Annotations for a Colonial Ascidian, the Light-Bulb Sea Squirt Clavelina lepadiformis	17
A Chromosome-level Genome Assembly of the Highly Heterozygous Sea UrchinEchinometrasp. EZ Reveals Adaptation in the Regulatory Regions of Stress Response Genes	17
Mobile Gene Sequence Evolution within Individual Human Gut Microbiomes Is Better Explained by Gene-Specific Than Host-Specific Selective Pressures	16
Chromosome-level Genome Assembly ofEuphorbia peplus, a Model System for Plant Latex, Reveals that Relative Lack of Ty3 Transposons Contributed to Its Small Genome Size	16
Reduction of ribosomal expansion segments in yeast species of the Magnusiomyces/Saprochaete clade	16
The Genome of Plasmodium gonderi: Insights into the Evolution of Human Malaria Parasites	16
C. Brandon Ogbunu(gafor)	16
Genealogical Analyses of 3 Cultivated and 1 Wild Specimen of Vitis vinifera from Greece	16
Long-Read–Based Hybrid Genome Assembly and Annotation of Snow Algal Strain CCCryo 101-99 (cf. Sphaerocystis sp., Chlamydomonadales)	16
Horizontal Transposon Transfer and Their Ecological Drivers: The Case of Flower-breeding Drosophila	16
Diversity of Sex Chromosomes in Vertebrates: Six Novel Sex Chromosomes in Basal Haplochromines (Teleostei: Cichlidae)	16
What Determines Levels of Mitochondrial Genetic Diversity in Birds?	16
Whole-Genome Duplications and the Diversification of the Globin-X Genes of Vertebrates	16
The Chromosome-Level Genome ofTriplophysa dalaica(Cypriniformes: Cobitidae) Provides Insights into Its Survival in Extremely Alkaline Environment	15
Chromosome-Scale Genome Assembly of the Solitary Parasitoid Wasp Microplitis manilae Ashmead, 1904 (Braconidae: Microgastrinae)	15
Selection Maintains Protein Interactome Resilience in the Long-Term Evolution Experiment with Escherichia coli	15
Homoeolog Inference Methods Requiring Bidirectional Best Hits or Synteny Miss Many Pairs	15
First Annotated Genome of a Mandibulate Moth, Neomicropteryx cornuta, Generated Using PacBio HiFi Sequencing	15
High-Quality Genome Assembly and Comprehensive Transcriptome of the Painted Lady ButterflyVanessa cardui	15
Highlight: Birds Take tRNA Efficiency to New Heights	15
Convergent Adaptation in Mitochondria of Phylogenetically Distant Birds: Does it Exist?	15
A Broad Survey of Gene Body and Repeat Methylation in Cnidaria Reveals a Complex Evolutionary History	15
The Genome of the Haptophyte Diacronema lutheri (Pavlova lutheri, Pavlovales): A Model for Lipid Biosynthesis in Eukaryotic Algae	15
Conservation of a DNA Replication Motif among Phylogenetically Distant Budding Yeast Species	15
High Polymorphism Levels of De Novo ORFs in a Yoruba Human Population	14
Does Effective Population Size Govern Evolutionary Differences in Telomere Length?	14
Unveiling the Genetic History of the Maniq, a Primary Hunter-Gatherer Society	14
One Cell, Two Gears: Extensive Somatic Genome Plasticity Accompanies High Germline Genome Stability in Paramecium	14
Insertion–Deletion Events Are Depleted in Protein Regions with Predicted Secondary Structure	14
Genome Assembly of the Nematode Rhabditoides Inermis From a Complex Microbial Community	14
Whole-Genome Sequencing ofAcer catalpifoliumReveals Evolutionary History of Endangered Species	14
Editorial	14
Phylogenomic Analyses of 2,786 Genes in 158 Lineages Support a Root of the Eukaryotic Tree of Life between Opisthokonts and All Other Lineages	14
Investigating the Impact of Whole-Genome Duplication on Transposable Element Evolution in Teleost Fishes	14
Nucleotide Usage Biases Distort Inferences of the Species Tree	14
A Simulation Framework for Modeling the Within-Patient Evolutionary Dynamics of SARS-CoV-2	14
Pleiotropic Enhancers are Ubiquitous Regulatory Elements in the Human Genome	14
Highlight: Yellow is the New Black for Gobi Desert Lizards	14
De Novo Genome Assembly and Annotation of Leptosia nina Provide New Insights into the Evolutionary Dynamics of Genes Involved in Host-Plant Adaptation of Pierinae Butterflies	14
De Novo Genome Assembly and Annotation for the Synanthropic Webbing Clothes Moth (Tineola bisselliella): A Globally Distributed, Economically Important Pest	13
Highlight: A Deep Dive into the Adaptive Radiation of Clownfish	13
THI1 Gene Evolutionary Trends: A Comprehensive Plant-Focused Assessment via Data Mining and Large-Scale Analysis	13
Palaeognaths Reveal Evolutionary Ancestry of the Avian Major Histocompatibility Complex Class II	13
Telomere-to-telomere Genome Assembly of the Clubroot Pathogen Plasmodiophora Brassicae	13
Egg Yolk Protein Homologs Identified in Live-Bearing Sharks: Co-Opted in the Lecithotrophy-to-Matrotrophy Shift?	13
Efficient and Highly Continuous Chromosome-Level Genome Assembly of the First Chameleon Genome	13
Parallel Spectral Tuning of a Cone Visual Pigment Provides Evidence for Ancient Deep-Sea Adaptations in Cetaceans	13
Campylobacter fetus Plasmid Diversity: Comparative Analysis of Fully Sequenced Plasmids and Proposed Classification Scheme	13
Signatures of Adaptation, Constraints, and Potential Redundancy in the Canonical Immune Genes of a Key Pollinator	13
Evolution of MHC IIB Diversity Across Cichlid Fish Radiations	13
Increased Evolutionary Rate in the Z chromosome of Sympatric and Allopatric Species of Morpho Butterflies	13
Whole-Genome Sequences of Two Kazachstania barnettii Strains Isolated from Anthropic Environments	13
Aminoacyl-tRNA Synthetase Evolution within the Dynamic Tripartite Translation System of Plant Cells	13
Transcriptomic Sexual Conflict at Two Evolutionary Timescales Revealed by Experimental Evolution in Caenorhabditis elegans	13
Unusually Divergent Ubiquitin Genes and Proteins in Plasmodium Species	12
Genome Evolution and Introgression in the New Zealand mud Snails Potamopyrgus estuarinus and Potamopyrgus kaitunuparaoa	12
Unanticipated Loss of Inflammasomes in Birds	12
The Breeding Sex Ratio Interacts With Demographic History to Shape Comparative Patterns of Variation on the X Chromosome and the Autosomes	12
Contrasting Genomic Evolution Between Domesticated and WildKluyveromyces lactisYeast Populations	12
“Correcting” Gene Trees to be More Like Species Trees Frequently Increases Topological Error	12
Differential Gene Expression and Unbalanced Homeolog Expression Bias in 4 Million-Year-Old Allopolyploids of Nicotiana Section Repandae	12
Horizontal Transfer of Microbial Toxin Genes to Gall Midge Genomes	12
Ancient Sheep Genomes Reveal Four Millennia of North European Short-Tailed Sheep in the Baltic Sea Region	12
Stop Codon Usage as a Window into Genome Evolution: Mutation, Selection, Biased Gene Conversion and the TAG Paradox	12

An Extensive Survey of Vertebrate-specific, Nonvisual Opsins Identifies a Novel Subfamily, Q113-Bistable Opsin	12
The Evolution of Extreme Genetic Variability in a Parasite-Resistance Complex	12
Mitonuclear Interactions and the Origin of Macaque Societies	11
Clustering of Sex-Biased Genes and Transposable Elements in the Genome of the Medaka FishOryzias latipes	11
Comprehensive Phylogenomics of Methylobacterium Reveals Four Evolutionary Distinct Groups and Underappreciated Phyllosphere Diversity	11
Alternative Modes of Introgression-Mediated Selection Shaped Crop Adaptation to Novel Climates	11
Genetic Signatures of Positive Selection in Human Populations Adapted to High Altitude in Papua New Guinea	11
Exploring the Natural Origins of SARS-CoV-2 in the Light of Recombination	11
Our Tangled Family Tree: New Genomic Methods Offer Insight into the Legacy of Archaic Admixture	11
Comparing Small and Large Genomes Within Monogonont Rotifers	11
Technological Development and Advances for Constructing and Analyzing Plant Pangenomes	11
Evolution of Plant Conserved microRNAs After Whole-Genome Duplications	11
Evidence for a Syncytial Origin of Eukaryotes from Ancestral State Reconstruction	11
Myxozoans (Cnidaria) do not Retain Key Oxygen-Sensing and Homeostasis Toolkit Genes	11
Erratum to: Genomic analyses unveil helmeted guinea fowl (Numida meleagris) domestication in West Africa	11
How Sequence Context-Dependent Mutability Drives Mutation Rate Variation in the Genome	11
Bidirectional Introgression between Mus musculus domesticus and Mus spretus	11
Systematic Exploration of SARS-CoV-2 Adaptation to Vero E6, Vero E6/TMPRSS2, and Calu-3 Cells	11
Correction to: The Enigmatic Non-Transposon PIWI-interacting RNAs	11
Bivalves as Emerging Model Systems to Study the Mechanisms and Evolution of Sex Determination: A Genomic Point of View	11
Evolutionary Rate Shifts in Coding and Regulatory Regions Underpin Repeated Adaptation to Sulfidic Streams in Poeciliid Fishes	11
nf-LO: A Scalable, Containerized Workflow for Genome-to-Genome Lift Over	11
Controlling for Variable Transposition Rate with an Age-Adjusted Site Frequency Spectrum	11
The Mutational Road not Taken: Using Ancestral Sequence Resurrection to Evaluate the Evolution of Plant Enzyme Substrate Preferences	11
History of Diversification and Adaptation from North to South Revealed by Genomic Data: Guanacos from the Desert to Sub-Antarctica	11
Erratum to: Ultralong Oxford Nanopore Reads Enable the Development of a Reference-Grade Perennial Ryegrass Genome Assembly	11
Pharmacogenetic Variation in Neanderthals and Denisovans and Implications for Human Health and Response to Medications	11
Corrigendum to “Comparative genomics and pan-genomics of the Myxococcaceae, including a description of five novel species: Myxococcus eversor sp. nov., Myxococcus llanfairpwllgwyngyllgogeryc	10
Evolutionary Genetics and Admixture in African Populations	10
Genome Sequencing of a Gray Wolf from Peninsular India Provides New Insights into the Evolution and Hybridization of Gray Wolves	10
Chromosomal-Level Genome Assembly of the SpringtailTomocerus qinae(Collembola: Tomoceridae)	10
Rapid Genomic Evolution Drives the Diversification of Male Reproductive Genes in Dung Beetles	10
Genomic Insights into Fertilization: Tracing PLCZ1 Orthologs Across Amphibian Lineages	10
Multiple Displacement Amplification Facilitates SMRT Sequencing of Microscopic Animals and the Genome of the Gastrotrich Lepidodermella squamata (Dujardin 1841)	10
Ancient Adaptative Evolution of ACE2 in East Asians	10
Editor’s Note: A Naturally Heteroplasmic Clam Provides Clues about the Effects of Genetic Bottleneck on Paternal mtDNA	10
Protein–Protein Interactions Shape Genomic Autoimmunity in the Adaptively Evolving Rhino-Deadlock-Cutoff Complex	10
Effect of Different Types of Sequence Data on Palaeognath Phylogeny	10
The Adaptive Evolution of Leuciscus waleckii in Lake Dali Nur and Convergent Evolution of Cypriniformes Fishes Inhabiting Extremely Alkaline Environments	10
Ancestral Physical Stress and Later Immune Gene Family Expansions Shaped Bivalve Mollusc Evolution	10
Brain Gene Expression of Foraging Behavior and Social Environment inCeratina calcarata	10
A Short-Term View of Protein Sequence Evolution from Salmonella	10
The genome of the rayed Mediterranean limpet Patella caerulea (Linnaeus, 1758)	10
Functional Carbohydrate-Active Enzymes Acquired by Horizontal Gene Transfer from Plants in the Whitefly Bemisia tabaci	10
Corrigendum to: Intraspecific Transcriptome Variation and Sex-Biased Expression in Anopheles Arabiensis	10
A Chromosome-Level Genome Assembly of the Parasitic Wasp Chelonus formosanus Sonan 1932 (Hymenoptera: Braconidae)	10
Overdominant Mutations Restrict Adaptive Loss of Heterozygosity at Linked Loci	10
Inferring the Demographic History of Aye-Ayes (Daubentonia madagascariensis) from High-Quality, Whole-Genome, Population-Level Data	10
Variation in the Substitution Rates among the Human Mitochondrial Haplogroup U Sublineages	10
Genome Assembly of the Medicinal Plant Voacanga thouarsii	10
Population history across timescales in an urban archipelago	10
Intraspecific Variation in the Rates of Mutations Causing Structural Variation in Daphnia magna	10
Editor's Note on: Can a Y chromosome degenerate in an evolutionary instant? A commentary on Fong et al. 2023	10
Correction to: Inferring the Demographic History of Aye-Ayes (Daubentonia madagascariensis) from High-Quality, Whole-Genome, Population-Level Data	10
Genetics and Material Culture Support Repeated Expansions into Paleolithic Eurasia from a Population Hub Out of Africa	9
TheFoxGene Repertoire in the AnnelidOwenia fusiformisReveals Multiple Expansions of thefoxQ2Class in Spiralia	9
Gene Loss may have Shaped the Cnidarian and Bilaterian Hox and ParaHox Complement	9
Phylogenetic and Protein Structure Analyses Provide Insight into the Evolution and Diversification of the CD36 Domain “Apex” among Scavenger Receptor Class B Proteins across Eukarya	9
Inside the Shark Nursery: The Evolution of Live Birth in Cartilaginous Fish	9
CHD Chromatin Remodeling Protein Diversification Yields Novel Clades and Domains Absent in Classic Model Organisms	9
Deep Learning in Population Genetics	9
Genome Evolution in Plants: Complex Thalloid Liverworts (Marchantiopsida)	9
DrosoPhyla: Resources for Drosophilid Phylogeny and Systematics	9
Highlight: The Social Code—Deciphering the Genetic Basis of Hymenopteran Social Behavior	9
Chromosome-Level Genome Assembly of Callitettix versicolor (Rice Spittlebug)	9
Genomics, Population Divergence, and Historical Demography of the World's Largest and Endangered Butterfly, The Queen Alexandra's Birdwing	9
Rapid Evolution of Glycan Recognition Receptors Reveals an Axis of Host–Microbe Arms Races beyond Canonical Protein–Protein Interfaces	9
Maximum SNP FST Outperforms Full-Window Statistics for Detecting Soft Sweeps in Local Adaptation	9
A Machine Learning Framework Identifies Plastid-Encoded Proteins Harboring C3 and C4 Distinguishing Sequence Information	9
Functional Compensation of Mouse Duplicates by their Paralogs Expressed in the Same Tissues	9
Highlight: Reconciling Differences between Germline and Soma	9
Gene Body Methylation in Plants: Mechanisms, Functions, and Important Implications for Understanding Evolutionary Processes	9
Multiple Lineages of Nematode-Wolbachia Symbiosis in Supergroup F and Convergent Loss of Bacterioferritin in Filarial Wolbachia	8
Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation	8
Monodopsis and Vischeria Genomes Shed New Light on the Biology of Eustigmatophyte Algae	8
Population Genomics of Variegated Toad-Headed Lizard Phrynocephalus versicolor and Its Adaptation to the Colorful Sand of the Gobi Desert	8
In-Depth Satellitome Analyses of 37 Drosophila Species Illuminate Repetitive DNA Evolution in the Drosophila Genus	8
DNA Transposon Expansion is Associated with Genome Size Increase in Mudminnows	8
Establishment of Host–Algal Endosymbioses: Genetic Response to Symbiont Versus Prey in a Sponge Host	8
Comparative Transcriptomics Reveals Distinct Patterns of Gene Expression Conservation through Vertebrate Embryogenesis	8
Genome-Wide Discovery of Structural Variants Reveals Distinct Variant Dynamics for Two Closely Related Monilinia Species	8
A Chromosome-Level Genome Assembly ofToona ciliata(Meliaceae)	8
Parallel Independent Losses of G-Type Lysozyme Genes in Hairless Aquatic Mammals	8
Local Adaptation and the Evolution of Genome Architecture in Threespine Stickleback	8
Chromosome-Level Genome Assembly of Chinese Sucker (Myxocyprinus asiaticus) Reveals Strongly Conserved Synteny Following a Catostomid-Specific Whole-Genome Duplication	8
The Evolution of the Cytochrome c6 Family of Photosynthetic Electron Transfer Proteins	8
Taxonomic Uncertainty and the Anomaly Zone: Phylogenomics Disentangle a Rapid Radiation to Resolve Contentious Species (Gila robustaComplex) in the Colorado River	8
Highlight: Epigenetics HelpHydraGet Ahead	8
Genome Assembly and Evolutionary Analysis of the Mandarin Duck Aix galericulata Reveal Strong Genome Conservation among Ducks	8
Endosperm and Seed Transcriptomes Reveal Possible Roles for Small RNA Pathways in Wild Tomato Hybrid Seed Failure	8
HyRAD-X Exome Capture Museomics Unravels Giant Ground Beetle Evolution	8
Diploidy within a Haploid Genus of Entomopathogenic Fungi	8
A Chromosome-Level Genome of the Agile Gracile Mouse Opossum (Gracilinanus agilis)	8
Evolutionary Perspectives on Germline-Restricted Chromosomes in Flies (Diptera)	8
Concurrent Evolution of Antiaging Gene Duplications and Cellular Phenotypes in Long-Lived Turtles	8