Mobile DNA

Papers
(The median citation count of Mobile DNA is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-04-01 to 2025-04-01.)
ArticleCitations
The role of Smarcad1 in retroviral repression in mouse embryonic stem cells76
Software evaluation for de novo detection of transposons52
Marine vs. terrestrial: links between the environment and the diversity of Copia retrotransposon in metazoans41
The structural diversity of CACTA transposons in genomes of Chenopodium (Amaranthaceae, Caryophyllales) species: specific traits and comparison with the similar elements of angiosperms30
SINE jumping contributes to large-scale polymorphisms in the pig genomes24
Subfamily-specific differential contribution of individual monomers and the tether sequence to mouse L1 promoter activity22
RepEnTools: an automated repeat enrichment analysis package for ChIP-seq data reveals hUHRF1 Tandem-Tudor domain enrichment in young repeats20
Analysis of antibiotic resistance gene cassettes in a newly identified Salmonella enterica serovar Gallinarum strain in Korea20
Unbiased proteomic mapping of the LINE-1 promoter using CRISPR Cas917
Subcellular location of L1 retrotransposon-encoded ORF1p, reverse transcription products, and DNA sensors in lupus granulocytes15
CAULIFINDER: a pipeline for the automated detection and annotation of caulimovirid endogenous viral elements in plant genomes15
International congress on transposable elements (ICTE 2024) in Saint Malo: breaking down transposon waves and their impact14
Correction: Transposon-derived introns as an element shaping the structure of eukaryotic genomes12
Whole-genome analysis reveals the contribution of non-coding de novo transposon insertions to autism spectrum disorder11
Themes and variations on piRNA-guided transposon control10
Recurrent co-domestication of PIF/Harbinger transposable element proteins in insects10
The coevolution between APOBEC3 and retrotransposons in primates9
Teleost genomic repeat landscapes in light of diversification rates and ecology9
Telomeric retrotransposons show propensity to form G-quadruplexes in various eukaryotic species9
Response from Varani et al. to “Comment on ‘the IS6 family, a clinically important group of insertion sequences including IS26’ by Ruth M. Hall”9
Transposable elements in genomic architecture of Monilinia fungal phytopathogens and TE-driven DMI-resistance adaptation8
Targeted detection of endogenous LINE-1 proteins and ORF2p interactions8
A genome-wide study of ruminants uncovers two endogenous retrovirus families recently active in goats8
Generalized nuclear localization of retroelement transcripts8
Correction to: Upregulation of selected HERVW loci in multiple sclerosis8
Subtelomeric repeat expansion in Hydractinia symbiolongicarpus chromosomes8
SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution7
Differential regulation of transposable elements (TEs) during the murine submandibular gland development6
Identification of transposable element families from pangenome polymorphisms6
An intronic LINE-1 regulates IFNAR1 expression in human immune cells6
Evolutionary dynamics of the LTR-retrotransposon crapaud in the Podospora anserina species complex and the interaction with repeat-induced point mutations5
Long-read sequencing improves the genetic diagnosis of retinitis pigmentosa by identifying an Alu retrotransposon insertion in the EYS gene5
Evolution of Einkorn wheat centromeres is driven by the mutualistic interplay of two LTR retrotransposons5
Look4LTRs: a Long terminal repeat retrotransposon detection tool capable of cross species studies and discovering recently nested repeats5
Internal initiation of reverse transcription in a Penelope-like retrotransposon5
Expression of down-regulated ERV LTR elements associates with immune activation in human small-cell lung cancers4
SINE-derived satellites in scaled reptiles4
Accelerating de novo SINE annotation in plant and animal genomes4
Transposable elements as essential elements in the control of gene expression4
The fifth Japanese meeting on biological function and evolution through interactions between hosts and transposable elements4
Comprehensive analysis of both long and short read transcriptomes of a clonal and a seed-propagated model species reveal the prerequisites for transcriptional activation of autonomous and non-autonomo4
A beginner’s guide to manual curation of transposable elements4
Multiple horizontal transfers of a Helitron transposon associated with a parasitoid wasp3
Genomic analysis reveals the role of integrative and conjugative elements in plant pathogenic bacteria3
Proceedings of the inaugural Dark Genome Symposium: November 20223
Upregulation of selected HERVW loci in multiple sclerosis3
Genomic approaches to trace the history of human brain evolution with an emerging opportunity for transposon profiling of ancient humans3
Retro-miRs: novel and functional miRNAs originating from mRNA retrotransposition3
SETMAR, a case of primate co-opted genes: towards new perspectives3
Characterization of transposable elements within the Bemisia tabaci species complex2
A systematic screen for co-option of transposable elements across the fungal kingdom2
Exploration of the regulatory relationship between KRAB-Zfp clusters and their target transposable elements via a gene editing strategy at the cluster specific linker-associated sequences by CRISPR-Ca2
Correction: A beginner’s guide to manual curation of transposable elements2
Reproducible evaluation of transposable element detectors with McClintock 2 guides accurate inference of Ty insertion patterns in yeast2
Multiple horizontal transfer events of a DNA transposon into turtles, fishes, and a frog2
On the origin of the P-element invasion in Drosophila simulans2
Eco-evolutionary significance of domesticated retroelements in microbial genomes2
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