Proteomics Clinical Applications

Article	Citations
Revealing the changes of IgG subclass‐specific N‐glycosylation in colorectal cancer progression by high‐throughput assay	34
Characterisation of Platelet Releasate Proteome in Relapsing‐Remitting Multiple Sclerosis Reveals Dysregulation of Inflammatory Signalling and Extracellular Vesicle Dynamics	24
In Search of Candidate Protein Biomarkers Related to COVID‐19 in Solid Tissues and Non‐Blood Fluids: An Update	23
Activity‐Based Proteome Profiling of Serum Serine Hydrolases: Application in Pediatric Abusive Head Trauma	13
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Front Cover	13
Masthead: Proteomics 1'23	11
Editorial Board: Proteomics 3'23	11
Front Cover	11
Identification of a serum biomarker signature associated with metastatic prostate cancer	10
Tape stripped stratum corneum samples are suitable for diagnosis and comprehensive proteomic investigation in mycosis fungoides	10
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Protein sample preparation for tissue distribution study	9
Current advances in antibody‐based serum biomarker studies: From protein microarray to phage display	9
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Proteoglycans in breast cancer, identification and characterization by LC‐MS/MS assisted proteomics approach: A review	8
Editorial Board: Proteomics 4'21	8
Biomarkers for the central nervous system complications of sickle cell disease: are we there yet?	8
Masthead: Proteomics 6'23	7
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Cerebrospinal fluid proteins in idiopathic intracranial hypertension: An exploratory SWATH proteomics analysis	7
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Association analysis of hepatocellular carcinoma‐related hub proteins and hub genes	6
Editorial Board: Proteomics 1'24	6
Development of multiple reaction monitoring (MRM) assays to identify Brucella abortus proteins in the serum of humans and livestock	6

Comparative proteomics of saliva of healthy and gingivitis individuals from Rio de Janeiro	5
Front Cover	5
Screening of novel biomarkers for acute kidney transplant rejection using DIA‐MS based proteomics	5
Understanding LC/MS‐Based Metabolomics: A Detailed Reference for Natural Product Analysis	5
The functional roles of m6A modification in prostate cancer	5
Quantitative proteomics analysis identifies salivary biomarkers for early detection of pregnancy loss in a Singaporean cohort—A pilot study	5
Proteomic study of apheresis platelets made HLA class I deficient for transfusion of refractory patients	5
Plasma proteomics identify potential severity biomarkers from COVID‐19 associated network	4
Proteomic analysis of human articular cartilage unravels the dyscoagulation in osteoarthritis and the potential value of serpinA5 as a biomarker for osteoarthritis	4
Identification of a potential prognostic plasma biomarker of acute ischemic stroke via untargeted LC‐MS metabolomics	4
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Parallel accumulation‐serial fragmentation method for in‐depth proteomic analysis of bronchoalveolar lavage fluid collected from patients with nonsmall cell lung cancer	4
Integration of the cancer cell secretome and transcriptome reveals potential noninvasive diagnostic markers for bladder cancer	4
Optimised plasma sample preparation and LC‐MS analysis to support large‐scale proteomic analysis of clinical trial specimens: Application to the Fenofibrate Intervention and Event Lowering in Diabetes	4
Mass Spectrometric and Artificial Intelligence‐Based Identification of the Secretome of Plasmodium falciparum Merozoites to Provide Novel Candidates for Vaccine Development Pipeline	4
On the Ocean of Biomarkers for the Precise Diagnosis and Prognosis of Lung Diseases	4
Proteomic insights into Helcococcus kunzii in a diabetic foot ulcer‐like environment	4
Immunoproteomic Identification of Noncarbohydrate Antigens Eliciting Graft‐Specific Adaptive Immune Responses in Patients with Bovine Pericardial Bioprosthetic Heart Valves	4
Urinary collagen peptides: Source of markers for bone metabolic processes in kidney transplant recipients	4
Protein profiles in plasma: Development from infancy to 5 years of age	4
Masthead: Proteomics 5'24	4
Quantitative proteomic analysis of bronchoalveolar lavage fluids from patients with small cell lung cancers	4
Front Cover	3
A comparative study of data‐dependent acquisition and data‐independent acquisition in proteomics analysis of clinical lung cancer tissues constrained by blood contamination	3
Masthead: Proteomics 5'23	3
Front Cover	3
Editorial Board: Proteomics 6'21	3
Front Cover	3
Plasma proteome profiling using tandem mass tag labeling technology reveals potential biomarkers for Parkinson's disease: a preliminary study	3
A comparative proteomic analysis for non‐invasive early prediction of hypoxic‐ischemic injury in asphyxiated neonates	3
Integrated glycomics strategy for galactosylated‐N‐glycans recognized by Bandeiraea Simplicifolia Lectin I in salivary proteins associated with lung cancer	3
Causal Effects From Kidney Function to Plasma Proteome: Integrated Observational and Mendelian Randomization Analysis With >50,000 UK Biobank Participants	3
Discovery and validation of serum glycoprotein biomarkers for high grade serous ovarian cancer	3
Valosin‐containing protein (VCP/p97) is prognostically unfavorable in pediatric AML, and negatively correlates with unfolded protein response proteins IRE1 and GRP78: A report from the Children's Onco	3
Front Cover	2
Proteomics and Metabolomics Study on the Responses of Sertoli Cells Infected With Brucella and Its bvfA‐Deletion Strains	2
Design of experiments approach for systematic optimization of a single‐shot diaPASEF plasma proteomics workflow applicable for high‐throughput	2
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Proteomics reveals unique plasma signatures in constitutional thinness	2
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Editorial Board: Proteomics 6'24	2
Masthead: Proteomics 2'23	2
Subcellular proteomics insights into Alzheimer's disease development	2
dRama: Differential Ramachandran Plot as a Tool to Analyze Subtle Changes in Protein Secondary Structure	2
Masthead: Proteomics 4'22	2
Editorial Board: Proteomics 6'22	2
Potential functionality of Cutibacterium acnes extracellular vesicles in atopic dermatitis and acne vulgaris: A comparative proteomic analysis	2
Front Cover	2
Editorial Board: Proteomics 4'22	2
Masthead: Proteomics 2–3'21	2

Are mass spectrometry imaging‐based diagnostics becoming reality?	2
ECMHA‐PP: A Breast Cancer Prognosis Prediction Model Based on Energy‐Constrained Multi‐Head Self‐Attention	2
Front Cover	2
Serum proteomics profiling identifies a preliminary signature for the diagnosis of early‐stage lung cancer	2
Comprehensive profiling of the human fecal proteome from IBD patients with DIA‐MS enables evaluation of disease‐relevant proteins	2
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Amniotic fluid metabolomics identifies impairment of glycerophospholipid and amino acid metabolism during congenital Zika syndrome development	1
Editorial Board: Proteomics 4'24	1
Proteomics of ZIKV infected amniotic fluids of microcephalic fetuses reveals extracellular matrix and immune system dysregulation	1
Liver Tissue Proteins Improve the Accuracy of Plasma Proteins as Biomarkers in Diagnosing Metabolic Dysfunction‐Associated Steatohepatitis	1
Application of Proteomics in Maternal and Neonatal Health: Advancements and Future Directions	1
iTRAQ and two‐dimensional‐LC‐MS/MS reveal NAA10 is a potential biomarker in esophageal squamous cell carcinoma	1
Fast and straightforward simultaneous quantification of multiple apolipoproteins in human serum on a high‐throughput LC‐MS/MS platform	1
Associations of inflammation‐related proteome with demographic and clinical characteristics of people with HIV in South Africa	1
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Proteomic landscape of primary and metastatic brain tumors for heterogeneity discovery	1
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Detection of recombinant Spike protein in the blood of individuals vaccinated against SARS‐CoV‐2: Possible molecular mechanisms	1
Proteomics of azoospermia: Towards the discovery of reliable markers for non‐invasive diagnosis	1
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A protein microarray‐based serum proteomic investigation reveals distinct autoantibody signature in colorectal cancer	1
Front Cover	1
Proteomics and bioinformatics investigations to improve serological diagnosis of canine brucellosis	1
Editorial Board: Proteomics 2'24	1
Editorial Board: Proteomics 5'22	1
Label‐free quantitative proteomic and phosphoproteomic analyses of renal biopsy tissues in membranous nephropathy	1
Advances in plasma proteomics: Call for papers for an upcoming special issue	1
Masthead: Proteomics 5'22	1
Pilot proteomic analysis of cerebrospinal fluid in Alzheimer's disease	1
Front Cover	1
Optimization of a lysis method to isolate periplasmic proteins from Gram‐negative bacteria for clinical mass spectrometry	0
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Analytical validation of a multi‐protein, serum‐based assay for disease activity assessments in multiple sclerosis	0
Robust subtyping of non‐small cell lung cancer whole sections through MALDI mass spectrometry imaging	0
Spindle apparatus coiled‐coil protein 1 (SPDL1) serves as a novel prognostic biomarker in triple‐negative breast cancer	0
The crosstalking of lactate‐Histone lactylation and tumor	0
Global Profiling of Protein Lactylation in Human Hippocampi	0
Proteomic and metabolomic characterization of bone, liver, and lung metastases in plasma of breast cancer patients	0
Masthead: Proteomics 3'24	0
Development of a protein microarray for profiling circulating autoantibodies in human diseases	0
Pilot proteomic study of locally advanced rectal cancer before and after neoadjuvant chemoradiotherapy indicates high metabolic activity in non‐responders' tumor tissue	0
BoxCar increases the depth and reproducibility of diabetic urinary proteome analysis	0
Intraoperative plasma proteomic changes in cardiac surgery: In search of biomarkers of post‐operative delirium	0
Proteomic analysis identified potential age‐associated prognostic biomarkers in pneumonia‐derived paediatric sepsis	0
Front Cover	0
Masthead: Proteomics 4'24	0
Profiling of proteome changes in plasma of HIV‐infected patients receiving antiretroviral therapy	0
Issue Information: Proteomics 1'25	0
TMT‐Based Quantitative Proteomic Profiling of Human Esophageal Cancer Cells Reveals the Potential Mechanism and Potential Therapeutic Targets Associated With Radioresistance	0
Editorial Board: Proteomics 3'24	0
Methods and clinical biomarker discovery for targeted proteomics using Olink technology	0
A novel micropeptide, Slitharin, exerts cardioprotective effects in myocardial infarction	0
Measuring fucosylated alpha‐fetoprotein in hepatocellular carcinoma: A comparison of μTAS and parallel reaction monitoring	0
Prognostic value of protein biomarkers in liver transplantation: A systematic review	0
Prospecting Specific Protein Patterns for High Body Mass Index (BMI), Metabolic Syndrome and Type 2 Diabetes in Saliva and Blood Plasma From a Brazilian Population	0
Two effective models based on comprehensive lipidomics and metabolomics can distinguish BC versus HCs, and TNBC versus non‐TNBC	0
Lipopolysaccharide‐regulated secretion of soluble and vesicle‐based proteins from a panel of colorectal cancer cell lines	0
The Contribution and Perspectives of Proteomics to Epithelial Ovarian Cancer	0
Masthead: Proteomics 1'24	0
Proteomics and phosphoproteomics analysis of vitreous in idiopathic epiretinal membrane patients	0
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Quantifying Protein Acetylation in Diabetic Nephropathy from Formalin‐Fixed Paraffin‐Embedded Tissue	0
Protein Network Alterations in G‐CSF Treated Severe Congenital Neutropenia Patients and Beneficial Effects of Oral Health Intervention	0
N‐glycosylation of disease‐specific haptoglobin for the early screening of diabetic retinopathy	0
A proteomic investigation of isogenic radiation resistant prostate cancer cell lines	0
Masthead: Proteomics 6'21	0
Qualitative and quantitative proteomic and metaproteomic analyses of healthy human urine sediment	0
Analysis of Unfolded Protein Response Activation in Colon Adenocarcinoma Epithelial Cells: A Proteomic Study	0
Differential Abundance of Protein Acylation in Mycobacterium tuberculosis Under Exposure to Nitrosative Stress	0
Characterization of the Metabolic Proteome of Serum From Patients With Diabetic Distal Symmetric Polyneuropathy	0
Comparative Profiling of Milk Somatic Cells Proteomes Revealed Key Players in Mammary Immune Mechanisms During Mastitis in Tropical Sahiwal (Bos indicus) Cows	0
Issue Information: Proteomics 2'25	0
Salivary Proteome Is Altered in Children With Small Area Thermal Burns	0
Editorial Board: Proteomics 5'23	0
Editorial Board: Proteomics 2'22	0

Proteomics Analysis of Human Chorionic Villi Reveals Dysregulated Pathways That Contribute to Recurrent Pregnancy Loss	0
Realm of proteomics in breast cancer management and drug repurposing to alleviate intricacies of treatment	0
Descriptive proteomics of paired human vocal fold and buccal mucosa tissue	0
Masthead: Proteomics 2'24	0
Quantitative comparison of the renal pelvic urine and bladder urine to examine modifications of the urine proteome by the lower urinary tract	0
Masthead: Proteomics 6'22	0
Comparisons of Whole Saliva and Cell Free Saliva by DIA‐Based Proteome Profiling	0
Integrating SWATH‐MS proteomics and transcriptome analysis to preliminarily identify three DEGs as biomarkers for proliferative diabetic retinopathy	0
Editorial Board: Proteomics 3'22	0
Editorial Board: Proteomics 2–3'21	0
Proteomic profiles of Zika virus‐infected placentas bearing fetuses with microcephaly	0
Editorial Board: Proteomics 1'22	0
Rare HER2 L796P missense mutation promotes the growth and oncogenic signaling in breast cancer cells	0
Screening of differentially expressed proteins in placentas from patients with late‐onset preeclampsia	0
Placental and plasma early predictive biomarkers for gestational diabetes mellitus	0
Integrated plasma proteomics and N‐glycoproteomics reveals alterations in the N‐glycosylation in Chinese hepatocellular carcinoma patients	0
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Masthead: Proteomics 1'22	0
Correction to “Identification of Novel Biomarkers for Frailty Diagnosis Via Serum Amino Acids Metabolomic Analysis Using UPLC‐MS/MS”	0
Advancements in Single‐Cell Proteomics and Mass Spectrometry‐Based Techniques for Unmasking Cellular Diversity in Triple Negative Breast Cancer	0
Masthead: Proteomics 4'23	0
Proteomic Analysis of Fibroblasts Exposed to Resin Composite Release	0
Research progress in protein microarrays: Focussing on cancer research	0
Registration of Image Modalities for Analyses of Tissue Samples Using 3D Image Modelling	0
Proteome of Renal Tubuli and Serum Differentiate Pre‐Existing Type 2 Diabetes and Post‐Transplant Diabetes in Kidney Transplant Recipients	0
Masthead: Proteomics 3'23	0
Human peripheral blood mononuclear cells as a valuable source of disease‐related biomarkers: Evidence from comparative proteomics studies	0
Plasma proteomics analysis of adolescent idiopathic scoliosis patients revealed by Quadrupole‐Orbitrap mass spectrometry	0
Comparing endocervical mucus proteome of humans and rhesus macaques	0
Plasma nontargeted peptidomics discovers potential biomarkers for major depressive disorder	0
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Editorial Board: Proteomics 5'21	0
Exosomal proteins as a source of biomarkers in colon cancer‐derived peritoneal carcinomatosis – A pilot study	0
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Identification of differentially expressed proteins between fused and open sutures in sagittal nonsyndromic craniosynostosis during suture development by quantitative proteomic analysis	0
Advances in plasma proteomics: Moving from technology to precision medicine	0
Proteomic changes of botulinum neurotoxin injection on muscle growth in children with spastic cerebral palsy	0
Editorial Board: Proteomics 4'23	0
Pressure Cycling Technology Combined With MicroLC‐SWATH Mass Spectrometry for the Analysis of Sex‐Related Differences Between Male and Female Cerebella: A Promising Approach to Investigating Proteomic	0
Proteomic analysis of extracellular vesicle cargoes mirror the cardioprotective effects of rivaroxaban in patients with venous thromboembolism	0
“Hide and seek”: Misleading transferrin variants in PMM2‐CDG complicate diagnostics	0
Proteomic profiling of human bone from different anatomical sites – A pilot study	0
Label‐free quantitative proteomics identifies unique proteomes of clinical isolates of the Liverpool Epidemic Strain of Pseudomonas aeruginosa and laboratory strain PAO1	0
Integrative analysis of transcriptome and proteome profiles in primary and recurrent glioblastoma	0
Editorial Board: Proteomics 6'23	0
Comprehensive characterization of protein modifications using mass spectrometry and dry blood spots	0
Proteomic and lipidomic biomarkers in the diagnosis and progression of inflammatory bowel disease – a review	0
Masthead: Proteomics 2'22	0
Mass spectrometry‐based proteomic analysis of the effect of storage temperature on non‐invasively collected samples of human stratum corneum	0
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Masthead: Proteomics 5'21	0
Front Cover	0
Primary angle closure glaucoma is characterized by altered extracellular matrix homeostasis in the iris	0
Identification of potential extracellular vesicle protein markers altered in osteosarcoma from public databases	0
Plasma biomarkers for systemic inflammation in COVID‐19 survivors	0
Mass spectrometry‐based proteomic applications in dental implants research	0
Phosphoproteomics analysis of diabetic cardiomyopathy in aging‐accelerated mice and effects of D‐pinitol	0
MALDI mass spectrometry imaging unravels organ and amyloid‐type specific peptide signatures in pulmonary and gastrointestinal amyloidosis	0
Proteomics profiling of kidney brush border membrane from rats using LC‐MS/MS analysis	0
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Systemic Changes in Early Pregnancy in the Mare: An Integrated Proteomic Analysis of Blood Plasma, Histotroph, and Yolk Sac Fluid at Day 14 Post‐Ovulation	0
Quantitative proteomics analysis reveals novel insights into mechanisms of action of disulfiram (DSF)	0
Evaluation of autoantibody signatures in pituitary adenoma patients using human proteome arrays	0
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Bortezomib is significantly beneficial for de novo pediatric AML patients with low phosphorylation of the NF‐κB subunit RelA	0
Minimally Invasive Versus Invasive Proteomics: Urine and Blood Biomarkers in Coronary Artery Disease	0
Identification of novel biomarkers for frailty diagnosis via serum amino acids metabolomic analysis using UPLC‐MS/MS	0
Quantitative proteomics approach reveals novel biomarkers and pathological mechanism of keloid	0
Systematic evaluation of plasma signaling cascades by functional proteomics approaches: SARS‐CoV‐2 infection as model	0
Comparative salivary proteomics analysis of children with and without early childhood caries using the DIA approach: A pilot study	0
Front Cover	0
Tandem mass tag‐based quantitative proteomic analysis of cervical cancer	0
Editorial Board: Proteomics 1'23	0
Masthead: Proteomics 4'21	0
Proteomic Correlates of Vitamin D Supplementation in the Atherosclerosis Risk in Communities (ARIC) Study	0
Computational Insight in the Identification of Non‐Synonymous Single‐Nucleotide Polymorphism Affecting the Structure and Function of Interleukin‐4	0
Masthead: Proteomics 6'24	0
Editorial Board: Proteomics 2'23	0
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LC‐MS‐based urine metabolomics analysis of chronic subdural hematoma for biomarker discovery	0
Proteomic discovery in sickle cell disease: Elevated neurogranin levels in children with sickle cell disease	0
Is the proteomic composition of the salivary pellicle dependent on the substrate material?	0
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Editorial Board: Proteomics 5'24	0
Proteomic profiling of idiopathic Parkinson's disease primary patient cells by SWATH‐MS	0
Exploration of quantitative site‐specific serum O‐glycoproteomics with isobaric labeling for the discovery of putative O‐glycoprotein biomarkers	0
Intramural Administration of Translational Inhibitor Puromycin Upon Balloon Angioplasty Inhibits SMC Proliferation and Protein Synthesis–Vascular Proteome Profiling Analysis	0
Mass spectrometry‐based proteomic profiling of sonicate fluid differentiates Staphylococcus aureus periprosthetic joint infection from non‐infectious failure: A pilot study	0
Masthead: Proteomics 3'22	0
Investigating potential protein markers of cardiovascular disease in children with type 1 diabetes mellitus	0