OOIR: Observatory of International Research

Papers

(The median citation count of Marine Genomics is 1. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-08-01 to 2025-08-01.)

Article	Citations
Complete genome sequence of the marine mangrove fungus Sarcopodium sp.QM3–1 confirmed its high potential for antimicrobial activity	25
Complete genome of Nocardioides aquaticus KCTC 9944T isolated from meromictic and hypersaline Ekho Lake, Antarctica	19
Bioactivity of bacteria associated with Red Sea nudibranchs and whole genome sequence of Nocardiopsis dassonvillei RACA-4	15
De novo transcriptome assembly of the Southern Ocean copepod Rhincalanus gigas sheds light on developmental changes in gene expression	14
Aquaculture omics: An update on the current status of research and data analysis	12
Editorial Board	11
De novo transcriptome assembly of the deep-sea hydrothermal vent, shrimp Rimicaris exoculate (Crustacea: Decapoda), from the south Mid-Atlantic Ridge	10
Complete genome sequence of Pseudoalteromonas sp. Xi13 capable of degrading κ-selenocarrageenan isolated from the floating ice of Southern Ocean	10
Complete genome of Pelagovum pacificum SM1903T isolated from the marine surface oligotrophic environment	10
The complete genome sequence of Shewanella inventionis D1489 reveals its potential for the production of eicosapentaenoic acid	10
Complete genome sequence of Polaribacter sejongensis NJDZ03 exhibiting diverse macroalgal polysaccharide-degrading activity	9
Genomic analysis of Thalassospira sp. SW-3-3 reveals its genetic potential for phthalate pollution remediation	9
Genomic analysis of Alteromonas sp. M12 isolated from the Mariana Trench reveals its role in dimethylsulfoniopropionate cycling	8
RNA-seq analysis of the mantle transcriptome from Mytilus edulis during a seasonal spawning event in deep and shallow water culture sites on the northeast coast of Newfoundland, Canada	8
Genomic analysis of Isoptericola halotolerans SM2308 reveals its potential involved in fucoidan degradation	8
Editorial Board	8
Complete genome of Polaribacter huanghezhanensis KCTC 32516T isolated from glaciomarine fjord sediment of Svalbard	8
Genomic characteristics of nine Nitrospirota metagenome-assembled genomes in deep-sea sediments from East Pacific polymetallic nodules zone	7
Complete genome sequence of Alteromonas sp. OM2203, a marine bacterium degrading Ulva prolifera polysaccharides	7
Complete genome analysis of copper resistant bacteria Pseudoalteromonas sp. CuT4–3 isolated from a deep-sea hydrothermal vent	7
Genomic analysis of Rhodopirellula sp. P2 reveals its role in fucoidan degradation	6
Complete genome sequence of the denitrifying Pseudomonas sp. strain DNDY-54 isolated from deep-sea sediment of ninety east ridge	6
De novo assembly and annotation of the whole transcriptome of Muraenesox cinereus	6
Genomic divergence and differential gene expression between crustacean ecotypes across a marine thermal gradient	6
Complete genome sequence of Psychrobacter cibarius AOSW16051, a trimeric autotransporter adhesin synthesizing bacterium isolated from the Baltic Sea	6

Isolation and genome sequencing of a novel lytic Pseudoalteromonas phage SL20	6
Genome analysis of the heterotrophic microalga Thraustochytrium sp. TN22 to identify genes involved in exopolysaccharide and carotenoid biosynthesis pathways	6
Editorial Board	6
Genomic analysis of Vibrio sp. D3 reveals its role in marine sulfur cycling	6
Editorial Board	6
Complete genome sequence of Vibrio sinus, a potential contributor to collagen degradation	5
Complete genome analysis of Bacillus subtilis TY-1 reveals its biocontrol potential against tobacco bacterial wilt	5
Genomic analysis of a marine alphaproteobacterium Sagittula sp. strain MA-2 that carried eight plasmids	5
Iso-Seq assembly and functional annotation of full-length transcriptome of turbot (Scophthalmus maximus) during bacterial infection	5
Genomic insights into secondary metabolites of pharmaceutical utility for Hyphococcus flavus MCCC 1K03223T, isolated from bathypelagic seawater	5
Genome analysis of a new biosurfactants source: The Antarctic bacterium Psychrobacter sp. TAE2020	5
Genomic analysis of Cobetia sp. D5 reveals its role in marine sulfur cycling	4
Genomic analysis of Marinobacter flavimaris ZYH30 reveals its role in marine dimethylsulfide cycling	4
A first look at the ‘repeatome’ of Benedenia humboldti, a major pathogen in yellowtail aquaculture: Repetitive element characterization, nuclear rRNA operon assembly, and microsatellite discovery	4
First certain record of Demospongiae class (Porifera) alien species from the Mediterranean Sea	4
Transcriptome responses in copepods Calanus finmarchicus, Calanus glacialis and Calanus hyperboreus exposed to phenanthrene and benzo[a]pyrene	4
Complete genome sequence of the novel Antarctic Oceanisphaera sp. IT1–181 that carried five plasmids	4
A first annotated genome sequence for Haliotis midae with genomic insights into abalone evolution and traits of economic importance	4
Genomic analysis of Sulfitobacter sp. PM12 reveals its role in betaine metabolism	4
Effects of sampling and storage procedures on 16S rDNA amplicon sequencing results of kelp microbiomes	4
Genome analysis of Salinimicrobium sp. 3283s, a deep-sea bacterium isolated from the sediments of South China Sea, China	4
Complete genome sequence of Halomonas alkaliantarctica MSP3 isolated from marine sediment, Jeju Island	4
Complete genome sequence of Rhodoferax sp. PAMC 29310 from a marine sediment of the East Siberian Sea	4
Transcriptomic responses of saline-adapted Nile tilapia (Oreochromis niloticus) to rearing in both saline and freshwater	3
Genomic profiling of biosynthetic potentials of medicinal secondary metabolites for ‘Aliisedimentitalea scapharcae’ KCTC 42119T, isolated from ark shell	3
Genomic insights into Marinobacterium sediminicola CGMCC 1.7287T: A polyhydroxyalkanoate-producing bacterium isolated from marine sediment	3
Transcriptome analysis of the ink sac and brain tissues from Sepiella inermis: A resource for discovering genes related to the inking of cephalopods	3
Complete genome analysis of type strain of a novel bacterial family Temperatibacteraceae fam. nov., isolated from surface seawater	3
Complete genome analysis of deep-sea hydrothermal sulfur-oxidizing bacterium Sulfitobacter sp. TCYB15 associated with mussel Bathymodiolus marisindicus and insights into its habitat adaptation	3
Complete genome sequence of pectin-degrading Flavobacteriaceae bacterium GSB9	3
Complete genome sequence of marine Roseobacter lineage member Monaibacterium sp. ALG8 with six plasmids isolated from seawater around brown algae	3
Mining Chromodoris quadricolor symbionts for biosynthesis of novel secondary metabolites	3
Editorial Board	3
Genome sequencing and comparative genomics analysis of Halomonas sp. MT13 reveal genetic adaptation to deep-sea environment	3
Bimodal distribution of seafloor microbiota diversity and function are associated with marine aquaculture	3
Complete genome sequence analysis of Bacillus velezensis A5, a promising biocontrol agent from the Pacific Ocean	3
The complete genome sequence of Stenotrophomonas sp. P2112 for genome mining of polyvinyl chloride degrading enzymes	3
Complete genome sequence of Kordiimonas pumila N18T sheds light on biogeochemical roles of the genus Kordiimonas	3
Complete genome sequence of Shewanella marisflavi ECSMB14101, a red pigment synthesizing bacterium isolated from the East China Sea	3
Genome analysis of Rossellomorea sp. y25, a deep sea bacterium isolated from the sediments of South China Sea	3
Complete genome sequence and Carbohydrate Active Enzymes (CAZymes) repertoire of Gilvimarinus sp. DA14 isolated from the South China Sea	2
Complete genome sequence of Halomonas boliviensis strain kknpp38, a chlorine-resistant bacterium isolated from the early-stage marine biofilm	2
Editorial Board	2
Complete genome sequence of a denitrifying bacterium Halomonas sp. SS10-MC5 isolated from hydrothermal vent of Indian Ocean	2
Complete genome sequence of marine Roseobacter lineage member Ruegeria sp. YS9 with five plasmids isolated from red algae	2
De novo assembly and annotation of the transcriptome of the endangered seagrass Zostera capensis: Insights from differential gene expression under thermal stress	2
Metagenomic profiling of host-associated bacteria from 8 datasets of the red alga Porphyra purpurea with MetaPhlAn3	2
Editorial Board	2
Genomic analysis of Marinomonas algicola SM1966T reveals its role in marine sulfur cycling	2
Complete genome sequence of Streptomyces sp. HNA39, a new cyclizidine producer isolated from a South China Sea sediment	2

Complete genome of Rossellomorea sp. DA94, an agarolytic and orange-pigmented bacterium isolated from mangrove sediment of the South China Sea	2
Shotgun metagenomic analysis of bacterial symbionts associated with “Chromodoris quadricolor” mantle	2
The complete genome sequence of Pseudomonas chengduensis BC1815 for genome mining of PET degrading enzymes	2
Complete genome and carbohydrate-active enzymes of Arenibacter antarcticus KCTC 52924T isolated from deep sea sediment of Ross Sea, Antarctica	2
Editorial Board	1
Complete genome sequence of marine photoheterotophic bacterium Erythrobacter sp. JK5	1
Genomic analysis of Marinomonas profundi M1K-6T reveals its adaptation to deep-sea environment of the Mariana Trench	1
Complete genome sequence of Devosia beringensis S02T, a type strain with genes involved in deoxynivalenol degradation	1
Metagenomic and Recombination Analyses of Antimicrobial Resistance Genes from Recreational Waters of Black Sea Coastal Areas and Other Marine Environments Unveil Extensive Evidence for Their both Intr	1
Complete genome sequence of Crassaminicella sp. 143-21，isolated from a deep-sea hydrothermal vent	1
Complete genome sequence of piezotolerant Stutzerimonas kunmingensis 7850S isolated from the sediment of the Mariana Trench	1
Editorial Board	1
Complete genome of Mycolicibacterium phocaicum RL-HY01, a PAEs-degrading marine bacterial strain isolated from Zhanjiang Bay, China	1
Characterization of Chaetoceros lorenzianus-infecting DNA virus-derived promoters of genes from open reading frames of unknown function in Phaeodactylum tricornutum	1
Complete genome sequence of a nitrate reducing bacteria, Algoriphagus sp. Y33 isolated from the water of the Indian Ocean	1
Editorial Board	1
Whole-genome sequencing of Pseudomonas sp. TAE6080, a strain capable of inhibiting Staphylococcus epidermidis biofilm	1
ROS-dependent cell death of Heterosigma akashiwo induced by algicidal bacterium Hahella sp. KA22	1
De novo assembly and annotation of the pantranscriptome of Astyanax lacustris on the liver and pituitary-gonadal axis	1
Editorial Board	1
Complete genome sequence of Metabacillus sp. cB07, a bacterium inducing settlement and metamorphosis of coral larvae	1
Complete genome sequence of Pseudoalteromonas lipolytica M7NS11, a chitinolytic bacterium isolated from the New Britain Trench	1
Complete genome sequence of Roseivivax marinus strain TCYB24 with quorum sensing system reveal the adaptive mechanism against deep-sea hydrothermal environment	1
Genomic analysis of Pseudoalteromonas sp. M58 reveals its role in chitin biodegradation	1
The complete genome sequence of the planctomycetotal bacterium Bremerella sp. P1 with abundant genes involved in polysaccharide degradation	1
Transcriptomic response of intertidal brittle star Ophiothrix exigua to seasonal variation	1
Complete genome analysis reveals secondary metabolite biosynthetic capabilities of Streptomyces sp. R527F isolated from the Arctic Ocean	1
Transcriptomic analysis of Nodal – and BMP- associated genes during development to the juvenile seastar in Parvulastra exigua (Asterinidae)	1
The complete genome sequence of Acinetobacter sp. P1332, a tetrodotoxin-producing bacteria	1
The complete genome sequence of proteases-producing Shewanella sp. H8 isolated from Antarctica	1
Complete genome sequence of Kushneria phosphatilytica YCWA18T reveals the P-solubilizing activity of the genus Kushneria	1
Exploring the potential of mRNA for taxonomic delineation of marine benthic eukaryotes	1