OOIR: Observatory of International Research

Papers

(The TQCC of Marine Genomics is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-04-01 to 2025-04-01.)

Article	Citations
First transcriptome assembly of a new ciliate species (Protocruzia marianaensis) isolated from the Mariana Trench area	18
Complete genome sequence of Alteromonas marina OM2201, a marine bacterium degrading Ulva prolifera polysaccharides isolated from surface of the Yellow Sea	17
Complete genome sequence of the marine mangrove fungus Sarcopodium sp.QM3–1 confirmed its high potential for antimicrobial activity	17
Genomics analysis of Vreelandella piezotolerans V23 reveals its role in D-amino acids metabolism	14
Genomic analysis of Marinobacter flavimaris ZYH30 reveals its role in marine dimethylsulfide cycling	14
Metagenomic profiling of host-associated bacteria from 8 datasets of the red alga Porphyra purpurea with MetaPhlAn3	11
Genomic analysis of Cobetia sp. D5 reveals its role in marine sulfur cycling	10
Editorial Board	10
Complete genome of Mycolicibacterium phocaicum RL-HY01, a PAEs-degrading marine bacterial strain isolated from Zhanjiang Bay, China	10
Genomic analysis of Shewanella eurypsychrophilus YLB-09 reveals backgrounds related to its deep sea environment adaptation	10
Complete genome sequence of Roseivivax marinus strain TCYB24 with quorum sensing system reveal the adaptive mechanism against deep-sea hydrothermal environment	9
Genomic insights into secondary metabolites of pharmaceutical utility for Hyphococcus flavus MCCC 1K03223T, isolated from bathypelagic seawater	9
Regulation of gene expression during ontogeny of physiological function in the brackishwater amphipod Gammarus chevreuxi	8
Complete genome sequence of a novel Pseudomonas sp. IT1137 isolated from Antarctic intertidal sediment showing potential for alkane degradation at low temperatures	7
Editorial Board	7
Genome analysis of Salinimicrobium sp. 3283s, a deep-sea bacterium isolated from the sediments of South China Sea, China	7
Regulation of globin expression in Antarctic fish under thermal and hypoxic stress	7
Complete genome of Nocardioides aquaticus KCTC 9944T isolated from meromictic and hypersaline Ekho Lake, Antarctica	7
Comparative genomics and signatures of selection in North Atlantic eels	7
Editorial Board	7
Characterization and genomic analysis of a novel Pseudoalteromonas phage PS_L5	7
Genomic analysis of Marinimicrobium sp. C6131 reveals its genetic potential involved in chitin metabolism	7
De novo transcriptome assembly of the Southern Ocean copepod Rhincalanus gigas sheds light on developmental changes in gene expression	6
Complete genome sequence of a high cesium ion- tolerating bacterium Bacillus sp. Cs-700 isolated from the South China Sea sediment	6
Transcriptome responses in copepods Calanus finmarchicus, Calanus glacialis and Calanus hyperboreus exposed to phenanthrene and benzo[a]pyrene	6

The complete genome sequence of proteases-producing Shewanella sp. H8 isolated from Antarctica	6
De novo assembly and annotation of the transcriptome of the endangered seagrass Zostera capensis: Insights from differential gene expression under thermal stress	6
Effects of sampling and storage procedures on 16S rDNA amplicon sequencing results of kelp microbiomes	6
Genomic analysis of a marine alphaproteobacterium Sagittula sp. strain MA-2 that carried eight plasmids	6
Aquaculture omics: An update on the current status of research and data analysis	6
Transcriptome assemblies of two deep-sea octocorals Calyptrophora lyra and Chrysogorgia stellata from West Pacific seamount, Godin Guyot	6
Complete genome sequence of Marinomonas arctica BSI20414, a giant antifreeze protein-producing bacterium isolated from Arctic sea ice	6
Bioactivity of bacteria associated with Red Sea nudibranchs and whole genome sequence of Nocardiopsis dassonvillei RACA-4	6
Complete genome sequence of the 4-hydroxybenzoate-degrading bacterium Gymnodinialimonas sp. 57CJ19, a potential novel species from intertidal sediments	5
Genomic analysis of Sulfitobacter sp. PM12 reveals its role in betaine metabolism	5
A first annotated genome sequence for Haliotis midae with genomic insights into abalone evolution and traits of economic importance	5
Editorial Board	5
Complete genome sequence and Carbohydrate Active Enzymes (CAZymes) repertoire of Gilvimarinus sp. DA14 isolated from the South China Sea	5
Editorial Board	5
Editorial Board	5
Editorial Board	5
De novo transcriptome assembly of the deep-sea hydrothermal vent, shrimp Rimicaris exoculate (Crustacea: Decapoda), from the south Mid-Atlantic Ridge	4
Complete genome sequence of Janibaecter indicus YB324 from an Atlantic marine sediment	4
Editorial Board	4
Complete genome of Pelagovum pacificum SM1903T isolated from the marine surface oligotrophic environment	4
Transcriptome profiling of the early developmental stages in the giant mussel Choromytilus chorus exposed to delousing drugs	4
Complete genome sequence of Streptomyces sp. HNA39, a new cyclizidine producer isolated from a South China Sea sediment	4
Complete genome sequence of Halomonas boliviensis strain kknpp38, a chlorine-resistant bacterium isolated from the early-stage marine biofilm	4
Size and site specific transcriptomic responses of blue mussel (Mytilus edulis) to acute hypoxia	4
Transcriptomic investigation and biomarker discovery for zinc response in oysters Crassostrea gasar	4
De novo transcriptome sequencing of triton shell Charonia lampas sauliae: Identification of genes related to neurotoxins and discovery of genetic markers	4
The complete genome sequence of Shewanella inventionis D1489 reveals its potential for the production of eicosapentaenoic acid	4
Complete genome sequence of one novel marine Pseudomonas sp. BSw22131 growing with dimethylsulfoniopropionate (DMSP) as the sole carbon source	4
Complete genome sequence of Pseudoalteromonas sp. Xi13 capable of degrading κ-selenocarrageenan isolated from the floating ice of Southern Ocean	4
First certain record of Demospongiae class (Porifera) alien species from the Mediterranean Sea	4
Editorial Board	4
Editorial Board	4
Reference transcriptome assembly of a protogynous sex change fish, harlequin sandsmelt (Parapercis pulchella)	4