OOIR: Observatory of International Research

Papers

(The median citation count of Biochimica et Biophysica Acta-Gene Regulatory Mechanisms is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-08-01 to 2026-08-01.)

Article	Citations
Bioinformatic meta-analysis of transcriptomics of developing Drosophila muscles identifies temporal regulatory transcription factors including a Notch effector	88
Rho-dependent transcription termination is the dominant mechanism in Mycobacterium tuberculosis	42
The plant nucleoplasmin AtFKBP43 needs its extended arms for histone interaction	34
Histone variant H2B.Z acetylation is necessary for maintenance of Toxoplasma gondii biological fitness	32
In Cereibacter sphaeroides, expression of flagellin FlaA is posttranscriptionally controlled by the 5′ untranslated region of its mRNA and the regulatory proteins FlaF, FlbT and FlbR	29
Illuminating ligand-induced dynamics in nuclear receptors through MD simulations	29
Circular RNAs in animals: Biogenesis, function and cell fate control	28
The nucleolus: Coordinating stress response and genomic stability	23
Transposon insertion causes ctnnb2 transcript instability that results in the maternal effect zebrafish ichabod (ich) mutation	23
Editorial Board	23
HBO1, a MYSTerious KAT and its links to cancer	21
UBE4A catalyzes NRF1 ubiquitination and facilitates DDI2-mediated NRF1 cleavage	21
Epigenetic modification facilitates proline synthase PYCR1 aberrant expression in gastric cancer	21
Genome-wide survey identifies TNNI2 as a target of KLF7 that inhibits chicken adipogenesis via downregulating FABP4	20
Histone acetyltransferase 1 (HAT1) acetylates hypoxia-inducible factor 2 alpha (HIF2A) to execute hypoxia response	19
Dietary choline prevents high fat-induced disorder of hepatic cholesterol metabolism through SREBP-2/HNF-4α/CYP7A1 pathway in a freshwater teleost yellow catfish Pelteobagrus fulvidraco	19
Transcriptional landscape of long non-coding RNAs (lncRNAs) and its implication in viral diseases	18
Post-translational modifications of lysine-specific demethylase 1	17
Effective role of Curcumin on expression regulation of EZH2 histone methyltransferase as a dynamic epigenetic factor in osteogenic differentiation of human mesenchymal stem cells	16
Proteomic approaches to study ubiquitinomics	15
The versatility of the proteasome in gene expression and silencing: Unraveling proteolytic and non-proteolytic functions	15
The crucial role of small heat shock proteins in prostate cancer: mechanisms and new therapeutic perspectives	14
N/C-degron pathways and inhibitor development for PROTAC applications	14
DDX5 (p68) orchestrates β-catenin, RelA and SP1 mediated MGMT gene expression in human colon cancer cells: Implication in TMZ chemoresistance	14
Inflammation-induced nitric oxide suppresses PPARα expression and function via downregulation of Sp1 transcriptional activity in adipocytes	14

Estrogen produced in the retina by brain aromatase plays a significant role in zebrafish eye development	14
Editorial Board	14
The role of nucleotide opening dynamics in facilitated target search by DNA-repair proteins	14
The yeast mRNA-binding protein Cth2 post-transcriptionally modulates ergosterol biosynthesis in response to iron deficiency	13
Quantitative proteomics revealed the transition of ergosterol biosynthesis and drug transporters processes during the development of fungal fluconazole resistance	13
The mechanism of UP1 binding and unfolding of human telomeric DNA G-quadruplex	13
Specific DNA features of the RNA polymerase I core promoter element targeted by core factor	13
The N-degron pathway: From basic science to therapeutic applications	13
Differences and similarities in recognition of co-factors by Taf14	13
Post translational modifications at the verge of plant-geminivirus interaction	13
EBV infection alters DNA methylation in primary human colon cells: A path to inflammation and carcinogenesis?	12
Sirtuin4 impacts mitochondrial homeostasis in pancreatic cancer cells by reducing the stability of AlkB homolog 1 via deacetylation of the HRD1-SEL1L complex	12
RNA-protein interaction techniques - A historical and comparative analysis	12
Insight into the mechanism of AML del(9q) progression: hnRNP K targets the myeloid master regulators CEBPA (C/EBPα) and SPI1 (PU.1)	12
The Catsper3 promoter activity is regulated by the cAMP-Response Element Modulator tau (CREMτ) and the cAMP-Response Element Binding protein 1A (CREBA) transcription factors	12
Allelic variation within the major APOE CpG island affects its methylation in the brain of targeted replacement mice expressing human APOE	11
METTL3 activates PERK-eIF2α dependent coelomocyte apoptosis by targeting the endoplasmic reticulum degradation-related protein SEL1L in echinoderms	11
Machine learning based analysis of single-cell data reveals evidence of subject-specific single-cell gene expression profiles in acute myeloid leukaemia patients and healthy controls	11
The moonlighting of RAD23 in DNA repair and protein degradation	11
The fine-tuned crosstalk between lysine acetylation and the circadian rhythm	11
The presence of an intron relieves gene repression caused by promoter-proximal four-bp specific sequences in yeast	11
Nuclear export block of tyrosine-phosphorylated STAT1 facilitates rapid responsiveness to interferon-γ stimuli at the expense of signal strength	11
NMN alleviates oxidative stress damage in alopecia areata by activating SIRT7 and promoting glutamine metabolism	10
UPS regulation of gene expression and genome integrity	10
Disruption of the gene regulatory programme in neurodevelopmental disorders	10
Navigating the tumor landscape: VEGF, MicroRNAs, and the future of cancer treatment	10
Proteomic analysis reveals distinct gene regulatory functions of the paralogs MAGOH and MAGOHB in cell proliferation	10
Unraveling the battle for lysine: A review of the competition among post-translational modifications	10
MicroRNA-27a-3p targeting Vangl1 and Vangl2 inhibits cell proliferation in mouse granulosa cells	9
Protein post-translational modifications: A key factor in colorectal cancer resistance mechanisms	9
Expression of two forms of the calcium/calmodulin-dependent protein kinase Cmk2 is differentially regulated in response to calcium stress in budding yeast	9
Ubiquitination is a major modulator for the activation of inflammasomes and pyroptosis	9
GLI1, a novel target of the ER stress regulator p97/VCP, promotes ATF6f-mediated activation of XBP1	9
Expression of CMK2 is controlled by the general stress-response transcriptional factor Msn2 through a single STRE site in budding yeast	9
Human stem cell-specific epigenetic signatures control transgene expression	9
KDM5A noncanonically binds antagonists MLL1/2 to mediate gene regulation and promotes epithelial to mesenchymal transition	8
Metabolic substrates, histone modifications, and heart failure	8
Influence of cell volume on the gene transcription rate	8
Transcriptional responses of three slc39a/zip members (zip4, zip5 and zip9) and their roles in Zn metabolism in grass carp (Ctenopharyngodon idella)	8
Epigenetic oncogenesis, biomarkers and emerging chemotherapeutics for breast cancer	7
Isolation and characterisation of promoters from mouse genome to drive post-meiotic germ cell-specific robust gene expression for functional genomics studies	7
An epitope-tagged Swd2 reveals the different requirements of Swd2 concentration in H3K4 methylation and viability	7
The functions of FOXP transcription factors and their regulation by post-translational modifications	7
Insights into the target-directed miRNA degradation mechanism in Drosophila ovarian cell culture	7
Regulation of c-Kit gene transcription selectively by bisacridine derivative through promoter dual i-motif structures	7
A novel endoplasmic reticulum adaptation is critical for the long-lived Caenorhabditis elegans rpn-10 proteasomal mutant	7
Iron restriction increases the expression of a cytotoxic cysteine proteinase TvCP2 by a novel mechanism of tvcp2 mRNA alternative polyadenylation in Trichomonas vaginalis	6
Chromatin structure meets cryo-EM: Dynamic building blocks of the functional architecture	6
Editorial Board	6
Identification of a novel alternatively spliced isoform of the ribosomal uL10 protein	6

NtcA, LexA and heptamer repeats involved in the multifaceted regulation of DNA repair genes recF, recO and recR in the cyanobacterium Nostoc PCC7120	6
The cellular pathways that maintain the quality control and transport of diverse potassium channels	6
Editorial Board	6
Role of RNA helicases in circRNA biogenesis and regulation	6
Damaged collagen detected by collagen hybridizing peptide as efficient diagnosis marker for early hepatic fibrosis	5
Editorial Board	5
Functional characterization of promoter regions in selenoprotein synthesis-relevant genes (sbp2, eefsec and sepsecs) and their selenium-dependent regulation in yellow catfish Pelteobagrus fulvidraco	5
Effects of disease severity on RNA integrity measures in necrotising soft tissue infection as a possible source of research bias: An observational cohort study	5
TET enzymes: Involvement in cancer development and therapeutical perspectives	5
UPS writes a new saga of SAGA	5
The essential link: How STAT3 connects tumor metabolism to immunity	5
Editorial Board	5
DNA-PKcs as an upstream mediator of OCT4-induced MYC activation in small cell lung cancer	5
Growth rate is related to elongation of RNA polymerase II transcription in Saccharomyces cerevisiae	5
Exercise as an epigenetic modifier of cancer-associated inflammation: Unraveling the DNA methylation, histone modification, and non-coding RNA circuitry	5
miR-149-3p–mediated TIMP3 restoration suppresses tumor aggressiveness in sorafenib-resistant liver cancer cell	5
Characterization of divergent promoters PmaiA and Phyd from Gordonia: Co-expression and regulation by CRP	5
MOV10-mediated alternative splicing regulates mesangial cell proliferation in diabetic kidney disease	5
Zinc controls operator affinity of human transcription factor YY1 by mediating dimerization via its N-terminal region	5
Editorial Board	5
Editorial Board	4
Editorial Board	4
New roles for elongation factors in RNA polymerase II ubiquitylation and degradation	4
H3K56 acetylation affects Candida albicans morphology and secreted soluble factors interacting with the host	4
Novel splice variants of LINC00963 suppress colorectal cancer cell proliferation via miR-10a/miR-143/miR-217/miR-512-mediated regulation of PI3K/AKT and Wnt/β-catenin signaling pathways	4
LncRNA-mediated orchestrations of alternative splicing in the landscape of breast cancer	4
Competitive binding of TET1 and DNMT3A/B cooperates the DNA methylation pattern in human embryonic stem cells	4
The cAMP receptor protein, SyCRP1 acts as a transcriptional repressor of CO2-concentrating mechanism genes at high inorganic carbon levels in Synechocystis PCC 6803	4
Editorial Board	4
Normalization of gene counts affects principal components-based exploratory analysis of RNA-sequencing data	4
Incautious design of shRNAs for stable overexpression of miRNAs could result in generation of undesired isomiRs	4
Crosstalk between circular RNAs and the STAT3 signaling pathway in human cancer	4
A putative PIWIL/piRNA–OTX2 network: An emerging model for epigenetic regulation of cancer stemness in retinoblastoma	4