OOIR: Observatory of International Research

Papers

(The TQCC of Biochimica et Biophysica Acta-Gene Regulatory Mechanisms is 7. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-06-01 to 2025-06-01.)

Article	Citations
From why to how; The gene expression knowledge commons	40
Bioinformatic meta-analysis of transcriptomics of developing Drosophila muscles identifies temporal regulatory transcription factors including a Notch effector	30
The plant nucleoplasmin AtFKBP43 needs its extended arms for histone interaction	26
Histone variant H2B.Z acetylation is necessary for maintenance of Toxoplasma gondii biological fitness	26
Rho-dependent transcription termination is the dominant mechanism in Mycobacterium tuberculosis	23
The nucleolus: Coordinating stress response and genomic stability	22
Editorial Board	21
Illuminating ligand-induced dynamics in nuclear receptors through MD simulations	21
Transcriptional landscape of long non-coding RNAs (lncRNAs) and its implication in viral diseases	20
UBE4A catalyzes NRF1 ubiquitination and facilitates DDI2-mediated NRF1 cleavage	18
HBO1, a MYSTerious KAT and its links to cancer	15
Genome-wide survey identifies TNNI2 as a target of KLF7 that inhibits chicken adipogenesis via downregulating FABP4	15
Epigenetic modification facilitates proline synthase PYCR1 aberrant expression in gastric cancer	13
Histone acetyltransferase 1 (HAT1) acetylates hypoxia-inducible factor 2 alpha (HIF2A) to execute hypoxia response	13
Dietary choline prevents high fat-induced disorder of hepatic cholesterol metabolism through SREBP-2/HNF-4α/CYP7A1 pathway in a freshwater teleost yellow catfish Pelteobagrus fulvidraco	13
The gene regulation knowledge commons: the action area of GREEKC	12
Dealing with different conceptions of pollution in the Gene Regulation Knowledge Commons	12
Editorial Board	12
Proteomic approaches to study ubiquitinomics	11
Post-translational modifications of lysine-specific demethylase 1	11
Editorial Board	10
R-loop and its functions at the regulatory interfaces between transcription and (epi)genome	10
N/C-degron pathways and inhibitor development for PROTAC applications	10
DDX5 (p68) orchestrates β-catenin, RelA and SP1 mediated MGMT gene expression in human colon cancer cells: Implication in TMZ chemoresistance	10
Differential requirements for different subfamilies of the mammalian SWI/SNF chromatin remodeling enzymes in myoblast cell cycle progression and expression of the Pax7 regulator	10

The versatility of the proteasome in gene expression and silencing: Unraveling proteolytic and non-proteolytic functions	10
Effective role of Curcumin on expression regulation of EZH2 histone methyltransferase as a dynamic epigenetic factor in osteogenic differentiation of human mesenchymal stem cells	10
The role of nucleotide opening dynamics in facilitated target search by DNA-repair proteins	10
Post translational modifications at the verge of plant-geminivirus interaction	10
The crucial role of small heat shock proteins in prostate cancer: mechanisms and new therapeutic perspectives	9
Regulatory systems of chicken alpha-globin gene domain suppress bidirectional transcription	9
Inflammation-induced nitric oxide suppresses PPARα expression and function via downregulation of Sp1 transcriptional activity in adipocytes	9
Quantitative proteomics revealed the transition of ergosterol biosynthesis and drug transporters processes during the development of fungal fluconazole resistance	9
Editorial Board	9
The N-degron pathway: From basic science to therapeutic applications	9
Differences and similarities in recognition of co-factors by Taf14	8
The moonlighting of RAD23 in DNA repair and protein degradation	8
Ser392 phosphorylation modulated a switch between p53 and transcriptional condensates	8
WT1 regulates HOXB9 gene expression in a bidirectional way	8
Polycomb repressive complex 1 initiates and maintains tailless repression in Drosophila embryo	8
METTL3 activates PERK-eIF2α dependent coelomocyte apoptosis by targeting the endoplasmic reticulum degradation-related protein SEL1L in echinoderms	8
Insight into the mechanism of AML del(9q) progression: hnRNP K targets the myeloid master regulators CEBPA (C/EBPα) and SPI1 (PU.1)	8
Machine learning based analysis of single-cell data reveals evidence of subject-specific single-cell gene expression profiles in acute myeloid leukaemia patients and healthy controls	8
The yeast mRNA-binding protein Cth2 post-transcriptionally modulates ergosterol biosynthesis in response to iron deficiency	8
The mechanism of UP1 binding and unfolding of human telomeric DNA G-quadruplex	8
Specific DNA features of the RNA polymerase I core promoter element targeted by core factor	8
Sirtuin4 impacts mitochondrial homeostasis in pancreatic cancer cells by reducing the stability of AlkB homolog 1 via deacetylation of the HRD1-SEL1L complex	8
EBV infection alters DNA methylation in primary human colon cells: A path to inflammation and carcinogenesis?	8
Disruption of the gene regulatory programme in neurodevelopmental disorders	7
The presence of an intron relieves gene repression caused by promoter-proximal four-bp specific sequences in yeast	7
MicroRNA-27a-3p targeting Vangl1 and Vangl2 inhibits cell proliferation in mouse granulosa cells	7
UPS regulation of gene expression and genome integrity	7
Unraveling the battle for lysine: A review of the competition among post-translational modifications	7
Allelic variation within the major APOE CpG island affects its methylation in the brain of targeted replacement mice expressing human APOE	7
Influence of cell volume on the gene transcription rate	7
Human stem cell-specific epigenetic signatures control transgene expression	7
The fine-tuned crosstalk between lysine acetylation and the circadian rhythm	7
AutoFAIR-A portal for automating FAIR assessments for bioinformatics resources	7
KDM5A noncanonically binds antagonists MLL1/2 to mediate gene regulation and promotes epithelial to mesenchymal transition	7