OOIR: Observatory of International Research

Papers

(The TQCC of Biochimica et Biophysica Acta-Gene Regulatory Mechanisms is 6. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-04-01 to 2025-04-01.)

Article	Citations
Editorial Board	32
DNA methylation of the promoter region at the CREB1 binding site is a mechanism for the epigenetic regulation of brain-specific PKMζ	28
Editorial Board	26
Rpb4/7, a key element of RNA pol II to coordinate mRNA synthesis in the nucleus with cytoplasmic functions in Saccharomyces cerevisiae	26
Sirtuin4 impacts mitochondrial homeostasis in pancreatic cancer cells by reducing the stability of AlkB homolog 1 via deacetylation of the HRD1-SEL1L complex	21
Rho-dependent transcription termination is the dominant mechanism in Mycobacterium tuberculosis	20
Dynamics of epigenetic control in plants via SET domain containing proteins: Structural and functional insights	20
Histone ubiquitination: Role in genome integrity and chromatin organization	19
DDX3X functionally and physically interacts with Estrogen Receptor-alpha	15
Editorial Board	14
Histone variant H2B.Z acetylation is necessary for maintenance of Toxoplasma gondii biological fitness	14
Ser392 phosphorylation modulated a switch between p53 and transcriptional condensates	13
From why to how; The gene expression knowledge commons	12
Chemical biology and pharmacology of histone lysine methylation inhibitors	11
The nucleolus: Coordinating stress response and genomic stability	11
UPS writes a new saga of SAGA	11
Insight into the mechanism of AML del(9q) progression: hnRNP K targets the myeloid master regulators CEBPA (C/EBPα) and SPI1 (PU.1)	10
Post-translational modifications in stress granule and their implications in neurodegenerative diseases	10
BCL11b interacts with RNA and proteins involved in RNA processing and developmental diseases	10
Post-translational regulation of proto-oncogene ZBTB7A expression by p53 status in cancer cells: HSP90-dependent stabilization vs. p53-KLHL20-ubiquitin proteasomal degradation	10
Damaged collagen detected by collagen hybridizing peptide as efficient diagnosis marker for early hepatic fibrosis	10
Bioinformatic meta-analysis of transcriptomics of developing Drosophila muscles identifies temporal regulatory transcription factors including a Notch effector	9
Transcriptional regulation of Znt family members znt4, znt5 and znt10 and their function in zinc transport in yellow catfish (Pelteobagrus fulvidraco)	9
Long noncoding RNAs in ubiquitination, protein degradation, and human diseases	9
EBV infection alters DNA methylation in primary human colon cells: A path to inflammation and carcinogenesis?	9

Illuminating ligand-induced dynamics in nuclear receptors through MD simulations	9
Inactivation of CbrAB two-component system hampers root colonization in rhizospheric strain of Pseudomonas aeruginosa PGPR2	8
The moonlighting of RAD23 in DNA repair and protein degradation	8
Analysis of the proximal promoter of the human colon-specific B4GALNT2 (Sda synthase) gene: B4GALNT2 is transcriptionally regulated by ETS1	8
Histone H4K20 monomethylation enables recombinant nucleosome methylation by PRMT1 in vitro	8
A GO catalogue of human DNA-binding transcription factors	8
From the comparative study of a circRNA originating from an mammalian ATXN2L intron to understanding the genesis of intron lariat-derived circRNAs	8
Cut from the same cloth: RNAs transcribed from regulatory elements	8
Selenoprotein F (SELENOF)-mediated AKT1-FOXO3a-PYGL axis contributes to selenium supranutrition-induced glycogenolysis and lipogenesis	8
METTL3 activates PERK-eIF2α dependent coelomocyte apoptosis by targeting the endoplasmic reticulum degradation-related protein SEL1L in echinoderms	8
Catching BETs by viruses	8
Alzheimer's disease-associated mutant ubiquitin (UBB+1) is secreted through an autophagosome-like vesicle-mediated unconventional pathway	7
Editorial Board	7
Multimerization of HIF enhances transcription of target genes containing the hypoxia ancillary sequence	7
Hereditary Vitamin D-Resistant Rickets (HVDRR) associated SNP variants of vitamin D receptor exhibit malfunctioning at multiple levels	7
The plant nucleoplasmin AtFKBP43 needs its extended arms for histone interaction	7
Reviewer Acknowledgement	7
The fine-tuned crosstalk between lysine acetylation and the circadian rhythm	7
Modulation of Krüppel-like factors (KLFs) interaction with their binding partners in cancers through acetylation and phosphorylation	7
The epigenetic regulation of the germinal center response	7
The presence of an intron relieves gene repression caused by promoter-proximal four-bp specific sequences in yeast	7
Editorial Board	7
Editorial Board	7
Editorial Board	7
siRNA enrichment in Argonaute 2-depleted Blattella germanica	7
RNA thermometers in bacteria: Role in thermoregulation	6
Genome-wide survey identifies TNNI2 as a target of KLF7 that inhibits chicken adipogenesis via downregulating FABP4	6
Regulation of SARS-CoV-2 infection and antiviral innate immunity by ubiquitination and ubiquitin-like conjugation	6
The prediction of tumor and normal tissues based on the DNA methylation values of ten key sites	6
Integration of transcription coregulator complexes with sequence-specific DNA-binding factor interactomes	6
HBO1, a MYSTerious KAT and its links to cancer	6
Deep learning-based transcription factor activity for stratification of breast cancer patients	6
Dietary choline prevents high fat-induced disorder of hepatic cholesterol metabolism through SREBP-2/HNF-4α/CYP7A1 pathway in a freshwater teleost yellow catfish Pelteobagrus fulvidraco	6
Disruption of the gene regulatory programme in neurodevelopmental disorders	6
Epigenetic modification facilitates proline synthase PYCR1 aberrant expression in gastric cancer	6
Tumor-specific overexpression of histone gene, H3C14 in gastric cancer is mediated through EGFR-FOXC1 axis	6
WT1 regulates HOXB9 gene expression in a bidirectional way	6
UBE4A catalyzes NRF1 ubiquitination and facilitates DDI2-mediated NRF1 cleavage	6
Nucleo-cytoplasmic shuttling of RNA-binding factors: mRNA buffering and beyond	6