Annals of Applied Statistics

Article	Citations
Latent variable models for multivariate dyadic data with zero inflation: Analysis of intergenerational exchanges of family support	33
Likelihood-based bacterial identification approach for bimicrobial mass spectrometry data	24
Composite mixture of log-linear models with application to psychiatric studies	23
Inferring synergistic and antagonistic interactions in mixtures of exposures	22
Analysing the causal effect of London cycle superhighways on traffic congestion	20
ALPHA: Audit that learns from previously hand-audited ballots	19
Accurate estimation of rare cell-type fractions from tissue omics data via hierarchical deconvolution	18
Factor-assisted learning of ultrahigh-dimensional covariates with distributed functional and scalar mixtures with applications to the Avon Longitudinal Study of Parents and Children	18
Predicting gender employment discrepancies: A multivariate Fay-Herriot model for transformed proportions	17
Multilevel time-series models for small area estimation at different frequencies and domain levels	17
Modeling the social media relationships of Irish politicians using a generalized latent space stochastic blockmodel	16
Uncertainty quantification of a computer model for binary black hole formation	16
Zero-inflated quantile rank-score based test (ZIQRank) with application to scRNA-seq differential gene expression analysis	15
The risk of maternal complications after cesarean delivery: Near-far matching for instrumental variables study designs with large observational datasets	15
Two-sample tests for multivariate repeated measurements of histogram objects with applications to wearable device data	15
Modeling panels of extremes	15
Sequential Monte Carlo for sampling balanced and compact redistricting plans	14
Graph link prediction in computer networks using Poisson matrix factorisation	14
A latent mixture model for heterogeneous causal mechanisms in Mendelian randomization	14
Control charts for dynamic process monitoring with an application to air pollution surveillance	12
DeepMap: Deep learning-based single-cell data integration using iterative cell matching and structure preservation constraints	11
Dirichlet-tree multinomial mixtures for clustering microbiome compositions	11
Statistical matching and subclassification with a continuous dose: Characterization, algorithm, and application to a health outcomes study	11
Data-driven chimney fire risk prediction using machine learning and point process tools	10
Joint mixed membership modeling of multivariate longitudinal and survival data for learning the individualized disease progression	10

Marginally calibrated response distributions for end-to-end learning in autonomous driving	10
Variable screening and spatial smoothing in Fréchet regression with application to diffusion tensor imaging	10
Identifying peer influence in therapeutic communities adjusting for latent homophily	10
Penalized joint models of high-dimensional longitudinal biomarkers and a survival outcome	10
A Bayesian decision framework for optimizing sequential combination antiretroviral therapy in people with HIV	10
On the fair comparison of optimization algorithms in different machines	10
Flexible multivariate spatiotemporal Hawkes process models of terrorism	10
Approximate Bayesian inference for analysis of spatiotemporal flood frequency data	9
Risk set matched difference-in-differences for the analysis of effect modification in an observational study on the impact of gun violence on health outcomes	9
Real-time mechanistic Bayesian forecasts of COVID-19 mortality	9
Inference for stochastic kinetic models from multiple data sources for joint estimation of infection dynamics from aggregate reports and virological data	9
Disentangling the structure of ecological bipartite networks from observation processes	9
PoD-BIN: A probability of decision Bayesian interval design for time-to-event dose-finding trials with multiple toxicity grades	9
Bayesian hierarchical random-effects meta-analysis and design of phase I clinical trials	9
Semiparametric linear regression with an interval-censored covariate in the atherosclerosis risk in communities study	9
Randomization inference for cluster-randomized test-negative designs with application to Dengue studies: Unbiased estimation, partial compliance, and stepped-wedge design	9
Testing for the causal mediation effects of multiple mediators using the kernel machine difference method in genome-wide epigenetic studies	8
EBiCop: Ensemble bivariate copulas for modeling multivariate cyber data breach risks	8
An efficient doubly-robust imputation framework for longitudinal dropout, with an application to an Alzheimer’s clinical trial	8
Markov-modulated Hawkes processes for modeling sporadic and bursty event occurrences in social interactions	8
Modeling cell populations measured by flow cytometry with covariates using sparse mixture of regressions	8
Latent level correlation modeling of multivariate discrete-valued financial time series	8
Latent conjunctive Bayesian network: Unify attribute hierarchy and Bayesian network for cognitive diagnosis	8
A privacy-preserved and high-utility synthesis strategy for risk-based stratified subgroups of the Canadian scleroderma patient registry data	8
Tensor quantile regression with low-rank tensor train estimation	8
Bayesian multivariate sparse functional principal components analysis with application to longitudinal microbiome multiomics data	8
Nonparametric importance sampling for wind turbine reliability analysis with stochastic computer models	7
Pairwise nonlinear dependence analysis of genomic data	7
Clustering and meta-analysis using a mixture of dependent linear tail-free priors	7
Varying impacts of letters of recommendation on college admissions	7
Endogeneity and moments in time series momentum’s predictability test	7
An extension of estimating equations to model longitudinal medical cost trajectory with Medicare claims data linked to SEER cancer registry	7
Matrix completion methods for the total electron content video reconstruction	7
ANOPOW for replicated nonstationary time series in experiments	7
Generalized theme dictionary models for association pattern discovery	7
Continuous-time modelling of behavioural responses in animal movement	7
Modelling extremes of spatial aggregates of precipitation using conditional methods	7
Leveraging cellphone-derived mobility networks to assess Covid-19 travel risk	7
Predicting milk traits from spectral data using Bayesian probabilistic partial least squares regression	7
Modeling structure and country-specific heterogeneity in misclassification matrices of verbal autopsy-based cause of death classifiers	7
Postelection analysis of presidential election/poll data	7
Bidimensional linked matrix factorization for pan-omics pan-cancer analysis	7
Estimation and inference for exposure effects with latency in the Cox proportional hazards model in the presence of exposure measurement error	6
Subbotin graphical models for extreme value dependencies with applications to functional neuronal connectivity	6
Early effects of 2014 U.S. Medicaid expansions on mortality: Design-based inference for impacts on small subgroups despite small-cell suppression	6
Social distancing and COVID-19: Randomization inference for a structured dose-response relationship	6
Compressed spectral screening for large-scale differential correlation analysis with application in selecting Glioblastoma gene modules	6
Individual dynamic prediction for cure and survival based on longitudinal biomarkers	6
Communication network dynamics in a large organizational hierarchy	6
Using proxies to improve forecast evaluation	6

Estimating COVID-19 vaccine protection rates via dynamic epidemiological models—a study of 10 countries	6
Multiple imputation of hierarchical nonlinear time series data with an application to school enrollment data	6
Assessing treatment effect through compliance score in randomized trials with noncompliance	6
Association and causation: Attributes and effects of judges in equal employment opportunity commission litigation outcomes	6
Comparing baseball players across eras via novel Full House Modeling	6
Readability prediction: How many features are necessary?	6
Corrigendum Modeling biomarker ratios with gamma distributed components	6
Outcome-guided disease subtyping by generative model and weighted joint likelihood in transcriptomic applications	6
Distributed subsampling and quasi decorrelated score for cluster data: An application to Beijing multisite air quality	6
Probabilistic HIV recency classification—a logistic regression without labeled individual level training data	6
A three-state coupled Markov switching model for COVID-19 outbreaks across Quebec based on hospital admissions	6
Tracking hematopoietic stem cell evolution in a Wiskott–Aldrich clinical trial	5
Tensor regression for incomplete observations with application to longitudinal studies	5
Estimating Covid-19 transmission time using Hawkes point processes	5
A latent variable approach for modeling relational data with multiple receivers	5
Graph-aware modeling of brain connectivity networks	5
A Bayesian record linkage approach to applications in tree demography using overlapping LiDAR scans	5
Causal inference for the effect of mobility on COVID-19 deaths	5
Semiparametric estimation for dynamic networks with shifted connecting intensities	5
TEAM: A multiple testing algorithm on the aggregation tree for flow cytometry analysis	5
Contrastive latent variable modeling with application to case-control sequencing experiments	5
Nested conformal prediction sets for classification with applications to probation data	5
Parameter calibration in wake effect simulation model with stochastic gradient descent and stratified sampling	5
Functional clustering for longitudinal associations between social determinants of health and stroke mortality in the U.S.	5
Complex discontinuity designs using covariates: Impact of school grade retention on later life outcomes in Chile	5
Deconvolution analysis of spatial transcriptomics by multiplicative-additive Poisson-gamma models	5
Spatial predictions on physically constrained domains: Applications to Arctic sea salinity data	5
Pan-disease clustering analysis of the trend of period prevalence	5
Computationally efficient Bayesian unit-level models for non-Gaussian data under informative sampling with application to estimation of health insurance coverage	5
Network method for voxel-pair-level brain connectivity analysis under spatial-contiguity constraints	5
Temporal network influence model with application to the COVID-19 population flow network	5
Latent subgroup identification in image-on-scalar regression	5
Assessing aquatic toxicity assessment via a clustered variance model	5
Bayesian model selection: Application to the adjustment of fundamental physical constants	5
Estimating product cannibalisation in wholesale using multivariate Hawkes processes with inhibition	5
Flexible instrumental variable models with Bayesian additive regression trees	5
Nonparametric causal decomposition of group disparities	5
Design-based inference for spatial experiments under unknown interference	5
Neural networks for extreme quantile regression with an application to forecasting of flood risk	4
Network differential connectivity analysis	4
Joint stochastic simulation of extreme coastal and offshore significant wave heights	4
Learn then test: Calibrating predictive algorithms to achieve risk control	4
A functional-data approach to the Argo data	4
Learning risk preferences in Markov decision processes: An application to the fourth down decision in the national football league	4
Regularized fingerprinting in detection and attribution of climate change with weight matrix optimizing the efficiency in scaling factor estimation	4
Estimating the effectiveness of permanent price reductions for competing products using multivariate Bayesian structural time series models	4
Nonparametric additive value functions: Interpretable reinforcement learning with an application to surgical recovery	4
Heterogeneous network analysis of disease clinical treatment measures via mining electronic medical record data	4
Bayesian local false discovery rate for sparse count data with application to the discovery of hotspots in protein domains	4
Benefits and costs of matching prior to a difference in differences analysis when parallel trends does not hold	4
Integrating Mendelian randomization with causal mediation analyses for characterizing direct and indirect exposure-to-outcome effects	4
Multivariate mixed membership modeling: Inferring domain-specific risk profiles	4
A Bayesian precision medicine framework for calibrating individualized therapeutic indices in cancer	4
Bayesian non-homogeneous hidden Markov model with variable selection for investigating drivers of seizure risk cycling	4
Statistical curve models for inferring 3D chromatin architecture	4
Scalable change-point and anomaly detection in cross-correlated data with an application to condition monitoring	4
A high-dimensional approach to measure connectivity in the financial sector	4
Modeling animal movement with directional persistence and attractive points	4
Design-based mapping of land use/land cover classes with bootstrap estimation of precision by nearest-neighbour interpolation	4
Spatial functional data modeling of plant reflectances	4
Structure learning for zero-inflated counts with an application to single-cell RNA sequencing data	4
Model-robust Bayesian design through generalised additive models for monitoring submerged shoals	4
Knockoffs with side information	4
CeCNN: Copula-enhanced convolutional neural networks in joint prediction of refraction error and axial length based on ultra-widefield fundus images	4
Multimodel ensemble analysis with neural network Gaussian processes	4
Learning common structures in a collection of networks. An application to food webs	4
Are made and missed different? An analysis of field goal attempts of professional basketball players via depth based testing procedure	4
Sparse block signal detection and identification for shared cross-trait association analysis	4
What makes forest-based heterogeneous treatment effect estimators work?	4
Inhomogeneous spatio-temporal point processes on linear networks for visitors’ stops data	4
How many refugees and migrants died trying to reach Europe? Joint population size and total estimation	4
Improved inference on risk measures for univariate extremes	4
Measuring information transfer between nodes in a brain network through spectral transfer entropy	4
Joint modeling of playing time and purchase propensity in massively multiplayer online role-playing games using crossed random effects	4
A Bayesian hierarchical model for combining multiple data sources in population size estimation	3
Is the price cap for gas useful? Evidence from European countries	3
Scalable test of statistical significance for protein-DNA binding changes with insertion and deletion of bases in the genome	3
Subgroup identification and variable selection for treatment decision making	3
Functional factor modeling of brain connectivity	3
Permutation tests under a rotating sampling plan with clustered data	3

A deep neural network two-part model and feature importance test for semicontinuous data	3
Do forecasts of bankruptcy cause bankruptcy? A machine learning sensitivity analysis	3
Semiparametric bivariate hierarchical state space model with application to hormone circadian relationship	3
Bayesian learning of clinically meaningful sepsis phenotypes in northern Tanzania	3
A Bayesian panel vector autoregression to analyze the impact of climate shocks on high-income economies	3
A Bayesian accelerated failure time model for interval censored three-state screening outcomes	3
Markov random field models for vector-based representations of landscapes	3
Identifying boundaries in spatially continuous risk surfaces from spatially aggregated disease count data	3
Estimation of Gaussian directed acyclic graphs using partial ordering information with applications to DREAM3 networks and dairy cattle data	3
Estimating the average treatment effect in randomized clinical trials with all-or-none compliance	3
A spatial autoregressive random forest algorithm for small-area spatial prediction	3
Spatiotemporal wildfire modeling through point processes with moderate and extreme marks	3
Analysis of presence-only data via exact Bayes, with model and effects identification	3
Bayesian inference for partial orders from random linear extensions: Power relations from 12th century royal acta	3
Binned multinomial logistic regression for integrative cell-type annotation	3
Averaged Prediction Models (APM): Identifying causal effects in controlled pre-post settings with application to gun policy	3
Thompson sampling for zero-inflated count outcomes with an application to the Drink Less mobile health study	3
Analyzing environmental bioassays with spatial odds, risk, and survival probability ratio regressions	3
Estimating functional parameters for understanding the impact of weather and government interventions on COVID-19 outbreak	3
Ordinal probit functional outcome regression with application to computer-use behavior in rhesus monkeys	3
Predicting competitions by combining conditional logistic regression and subjective Bayes: An Academy Awards case study	3
Bayesian Cox regression for large-scale inference with applications to electronic health records	3
Bayesian decision theory for tree-based adaptive screening tests with an application to youth delinquency	3
Improving exoplanet detection power: Multivariate Gaussian process models for stellar activity	3
Network-level traffic flow prediction: Functional time series vs. functional neural network approach	3
Ice model calibration using semicontinuous spatial data	3
Doubly-online changepoint detection for monitoring health status during sports activities	3
Modeling trajectories using functional linear differential equations	3
Bayesian analysis of verbal autopsy data using factor models with age- and sex-dependent associations between symptoms	3
A flexible Bayesian framework to estimate age- and cause-specific child mortality over time from sample registration data	3
Manifold valued data analysis of samples of networks, with applications in corpus linguistics	3
The properties of covariate-adaptive randomization procedures with possibly unequal allocation ratio	3
A flexible sensitivity analysis approach for unmeasured confounding with multiple treatments and a binary outcome with application to SEER-Medicare lung cancer data	3
Network-based modeling of emotional expressions for multiple cancers via a linguistic analysis of an online health community	3
Federated learning of robust individualized decision rules with application to heterogeneous multihospital sepsis population	3
Estimating heterogeneous gene regulatory networks from zero-inflated single-cell expression data	3
The causal effect of a timeout at stopping an opposing run in the NBA	3
Truncated rank-based tests for two-part models with excessive zeros and applications to microbiome data	3
Bivariate hierarchical Bayesian model for combining summary measures and their uncertainties from multiple sources	3
A Riemann manifold model framework for longitudinal changes in physical activity patterns	3
Mediation analysis for associations of categorical variables: The role of education in social class mobility in Britain	2
Overlap violations in external validity: Application to Ugandan cash transfer programs	2
Bayesian mitigation of spatial coarsening for a Hawkes model applied to gunfire, wildfire and viral contagion	2
Semiparametric modeling of SARS-CoV-2 transmission using tests, cases, deaths, and seroprevalence data	2
Fast variable selection for distributional regression with application to continuous glucose monitoring data	2
A general framework for penalized mixed-effects multitask learning with applications on DNA methylation surrogate biomarkers creation	2
Multiscale spectral modelling for nonstationary time series within an ordered multiple-trial experiment	2
Robust sensible adversarial learning of deep neural networks for image classification	2
Bayesian model-based clustering for populations of network data	2
Predictive inference for travel time on transportation networks	2
Incorporating auxiliary information for improved statistical inference and its extensions to distributed algorithms with an application to personal credit	2
Has the Covid-19 outbreak capsized the predictive performance of Bayesian VAR models with cointegration and time-varying volatility?	2
Heterogeneous treatment and spillover effects under clustered network interference	2
Extended Beta models for poverty mapping. An application integrating survey and remote sensing data in Bangladesh	2
Land-use filtering for nonstationary spatial prediction of collective efficacy in an urban environment	2
Bayesian hierarchical modelling of sparse count processes in retail analytics	2
Support vector machine for dynamic survival prediction with time-dependent covariates	2
Detecting heterogeneous treatment effects with instrumental variables and application to the Oregon health insurance experiment	2
Estimating global and country-specific excess mortality during the Covid-19 pandemic	2
Balancing weights for region-level analysis: The effect of Medicaid expansion on the uninsurance rate among states that did not expand Medicaid	2
Integrative ecological regression analysis of U.S. county and state level COVID-19 death data for studying health disparity associations	2
Selecting subpopulations for causal inference in regression discontinuity designs	2
Sensitivity analysis of wind energy resources with Bayesian non-Gaussian and nonstationary functional ANOVA	2
A Bayesian approach to GRAPPA parallel fMRI image reconstruction increases SNR and power of task detection	2
Bayesian sparse vector autoregressive switching models with application to human gesture phase segmentation	2
Lagged couplings diagnose Markov chain Monte Carlo phylogenetic inference	2
A robust Bayesian meta-analysis for estimating the Hubble constant via time delay cosmography	2
Dynamic risk prediction for cervical precancer screening with continuous and binary longitudinal biomarkers	2
Athlete rating in multicompetitor games with scored outcomes via monotone transformations	2
Conditional functional clustering for longitudinal data with heterogeneous nonlinear patterns	2
Bayesian multiple instance classification based on hierarchical probit regression	2
Nonnegative tensor completion for dynamic counterfactual prediction on COVID-19 pandemic	2
Designing experiments for estimating an appropriate outlet size for a silo type problem	2
Bayesian data augmentation for recurrent events under intermittent assessment in overlapping intervals with applications to EMR data	2
A Bayesian group selection with compositional responses for analysis of radiologic tumor proportions and their genomic determinants	2
Flexible Bayesian spatial modeling for unknown missing data mechanism in survey analysis: An application to the Chinese general society survey	2
Detecting and modeling changes in a time series of proportions	2
Signal-noise ratio of genetic associations and statistical power of SNP-set tests	2
A framework for covariate-specific ROC curve estimation, with application to biometric recognition	2
The scalable birth–death MCMC algorithm for mixed graphical model learning with application to genomic data integration	2
An accumulation method for early fault warning and its application to wind turbine systems	2
Hierarchical Bayesian modeling of ocean heat content and its uncertainty	2
Bayesian joint modeling of high-dimensional discrete multivariate longitudinal data using generalized linear mixed models	2
Estimating animal utilization distributions from multiple data types: A joint spatiotemporal point process framework	2
Full Bayesian inference in hidden Markov models of plant growth	2
Higher criticism for discriminating word-frequency tables and authorship attribution	2
Inferring changes to the global carbon cycle with WOMBAT v2.0, a hierarchical flux-inversion framework	2
Bayesian inference for brain activity from functional magnetic resonance imaging collected at two spatial resolutions	2
Conex–Connect: Learning patterns in extremal brain connectivity from MultiChannel EEG data	2
Estimating life expectancy in the Canadian elderly population with dementia using prevalent cohort survival data	2
Estimating the likelihood of arrest from police records in presence of unreported crimes	2
Bayesian inference and dynamic prediction for multivariate longitudinal and survival data	2
Imputation scores	2
Quantile regression with a one-sided misclassified binary regressor	2
Large-scale multivariate sparse regression with applications to UK Biobank	2