Annals of Applied Statistics

Article	Citations
Composite mixture of log-linear models with application to psychiatric studies	29
A compositional model to assess expression changes from single-cell RNA-seq data	28
Latent variable models for multivariate dyadic data with zero inflation: Analysis of intergenerational exchanges of family support	21
Inferring synergistic and antagonistic interactions in mixtures of exposures	21
Likelihood-based bacterial identification approach for bimicrobial mass spectrometry data	18
Multilevel time-series models for small area estimation at different frequencies and domain levels	17
ALPHA: Audit that learns from previously hand-audited ballots	17
Modeling the social media relationships of Irish politicians using a generalized latent space stochastic blockmodel	17
Accurate estimation of rare cell-type fractions from tissue omics data via hierarchical deconvolution	17
Analysing the causal effect of London cycle superhighways on traffic congestion	17
A latent mixture model for heterogeneous causal mechanisms in Mendelian randomization	15
Predicting gender employment discrepancies: A multivariate Fay-Herriot model for transformed proportions	15
Graph link prediction in computer networks using Poisson matrix factorisation	15
Uncertainty quantification of a computer model for binary black hole formation	15
The risk of maternal complications after cesarean delivery: Near-far matching for instrumental variables study designs with large observational datasets	14
Statistical matching and subclassification with a continuous dose: Characterization, algorithm, and application to a health outcomes study	14
Sequential Monte Carlo for sampling balanced and compact redistricting plans	14
Two-sample tests for multivariate repeated measurements of histogram objects with applications to wearable device data	13
Zero-inflated quantile rank-score based test (ZIQRank) with application to scRNA-seq differential gene expression analysis	13
Control charts for dynamic process monitoring with an application to air pollution surveillance	13
Modeling panels of extremes	13
Dirichlet-tree multinomial mixtures for clustering microbiome compositions	13
On the fair comparison of optimization algorithms in different machines	12
Unsupervised streaming anomaly detection for instrumented infrastructure	12
Markov-modulated Hawkes processes for modeling sporadic and bursty event occurrences in social interactions	12

Marginally calibrated response distributions for end-to-end learning in autonomous driving	12
DeepMap: Deep learning-based single-cell data integration using iterative cell matching and structure preservation constraints	11
Testing for the causal mediation effects of multiple mediators using the kernel machine difference method in genome-wide epigenetic studies	11
A Bayesian decision framework for optimizing sequential combination antiretroviral therapy in people with HIV	10
Flexible multivariate spatiotemporal Hawkes process models of terrorism	10
Inference for stochastic kinetic models from multiple data sources for joint estimation of infection dynamics from aggregate reports and virological data	10
Real-time mechanistic Bayesian forecasts of COVID-19 mortality	10
Disentangling the structure of ecological bipartite networks from observation processes	9
Data-driven chimney fire risk prediction using machine learning and point process tools	9
Modeling cell populations measured by flow cytometry with covariates using sparse mixture of regressions	9
PoD-BIN: A probability of decision Bayesian interval design for time-to-event dose-finding trials with multiple toxicity grades	9
Identifying peer influence in therapeutic communities adjusting for latent homophily	9
Risk set matched difference-in-differences for the analysis of effect modification in an observational study on the impact of gun violence on health outcomes	9
Joint mixed membership modeling of multivariate longitudinal and survival data for learning the individualized disease progression	9
Partial-mastery cognitive diagnosis models	9
Semiparametric linear regression with an interval-censored covariate in the atherosclerosis risk in communities study	9
Bayesian hierarchical random-effects meta-analysis and design of phase I clinical trials	8
Global estimation and scenario-based projections of sex ratio at birth and missing female births using a Bayesian hierarchical time series mixture model	8
Approximate Bayesian inference for analysis of spatiotemporal flood frequency data	8
Randomization inference for cluster-randomized test-negative designs with application to Dengue studies: Unbiased estimation, partial compliance, and stepped-wedge design	8
A privacy-preserved and high-utility synthesis strategy for risk-based stratified subgroups of the Canadian scleroderma patient registry data	8
Variable screening and spatial smoothing in Fréchet regression with application to diffusion tensor imaging	8
Tensor quantile regression with low-rank tensor train estimation	7
Varying impacts of letters of recommendation on college admissions	7
Bayesian multivariate sparse functional principal components analysis with application to longitudinal microbiome multiomics data	7
Generalized theme dictionary models for association pattern discovery	7
Penalized joint models of high-dimensional longitudinal biomarkers and a survival outcome	7
EBiCop: Ensemble bivariate copulas for modeling multivariate cyber data breach risks	7
Predicting milk traits from spectral data using Bayesian probabilistic partial least squares regression	7
An efficient doubly-robust imputation framework for longitudinal dropout, with an application to an Alzheimer’s clinical trial	7
Latent level correlation modeling of multivariate discrete-valued financial time series	7
Continuous-time modelling of behavioural responses in animal movement	7
Latent conjunctive Bayesian network: Unify attribute hierarchy and Bayesian network for cognitive diagnosis	7
ANOPOW for replicated nonstationary time series in experiments	7
Modeling structure and country-specific heterogeneity in misclassification matrices of verbal autopsy-based cause of death classifiers	7
Corrigendum Modeling biomarker ratios with gamma distributed components	6
Early effects of 2014 U.S. Medicaid expansions on mortality: Design-based inference for impacts on small subgroups despite small-cell suppression	6
Readability prediction: How many features are necessary?	6
Nonparametric importance sampling for wind turbine reliability analysis with stochastic computer models	6
Leveraging cellphone-derived mobility networks to assess Covid-19 travel risk	6
An extension of estimating equations to model longitudinal medical cost trajectory with Medicare claims data linked to SEER cancer registry	6
Subbotin graphical models for extreme value dependencies with applications to functional neuronal connectivity	6
Using proxies to improve forecast evaluation	6
Communication network dynamics in a large organizational hierarchy	6
Postelection analysis of presidential election/poll data	6
Endogeneity and moments in time series momentum’s predictability test	6
Matrix completion methods for the total electron content video reconstruction	6
Outcome-guided disease subtyping by generative model and weighted joint likelihood in transcriptomic applications	6
Estimating COVID-19 vaccine protection rates via dynamic epidemiological models—a study of 10 countries	6
Social distancing and COVID-19: Randomization inference for a structured dose-response relationship	6

Bidimensional linked matrix factorization for pan-omics pan-cancer analysis	6
Modelling extremes of spatial aggregates of precipitation using conditional methods	6
Pairwise nonlinear dependence analysis of genomic data	6
Estimation and inference for exposure effects with latency in the Cox proportional hazards model in the presence of exposure measurement error	6
Functional clustering for longitudinal associations between social determinants of health and stroke mortality in the U.S.	5
Tensor-variate finite mixture modeling for the analysis of university professor remuneration	5
Computationally efficient Bayesian unit-level models for non-Gaussian data under informative sampling with application to estimation of health insurance coverage	5
Comparing baseball players across eras via novel Full House Modeling	5
Probabilistic HIV recency classification—a logistic regression without labeled individual level training data	5
A latent variable approach for modeling relational data with multiple receivers	5
A three-state coupled Markov switching model for COVID-19 outbreaks across Quebec based on hospital admissions	5
Individual dynamic prediction for cure and survival based on longitudinal biomarkers	5
Nonparametric causal decomposition of group disparities	5
Tracking hematopoietic stem cell evolution in a Wiskott–Aldrich clinical trial	5
Assessing treatment effect through compliance score in randomized trials with noncompliance	5
Design-based inference for spatial experiments under unknown interference	5
Contrastive latent variable modeling with application to case-control sequencing experiments	5
Pan-disease clustering analysis of the trend of period prevalence	5
Association and causation: Attributes and effects of judges in equal employment opportunity commission litigation outcomes	5
TEAM: A multiple testing algorithm on the aggregation tree for flow cytometry analysis	5
Compressed spectral screening for large-scale differential correlation analysis with application in selecting Glioblastoma gene modules	5
Temporal network influence model with application to the COVID-19 population flow network	4
Parameter calibration in wake effect simulation model with stochastic gradient descent and stratified sampling	4
Semiparametric estimation for dynamic networks with shifted connecting intensities	4
Knockoffs with side information	4
Modeling animal movement with directional persistence and attractive points	4
Network differential connectivity analysis	4
Benefits and costs of matching prior to a difference in differences analysis when parallel trends does not hold	4
Multivariate mixed membership modeling: Inferring domain-specific risk profiles	4
Bayesian model selection: Application to the adjustment of fundamental physical constants	4
Network method for voxel-pair-level brain connectivity analysis under spatial-contiguity constraints	4
Estimating Covid-19 transmission time using Hawkes point processes	4
Latent subgroup identification in image-on-scalar regression	4
Tensor regression for incomplete observations with application to longitudinal studies	4
Improved inference on risk measures for univariate extremes	4
Joint modeling of playing time and purchase propensity in massively multiplayer online role-playing games using crossed random effects	4
Causal inference for the effect of mobility on COVID-19 deaths	4
Deconvolution analysis of spatial transcriptomics by multiplicative-additive Poisson-gamma models	4
Joint stochastic simulation of extreme coastal and offshore significant wave heights	4
Graph-aware modeling of brain connectivity networks	4
Assessing aquatic toxicity assessment via a clustered variance model	4
Nested conformal prediction sets for classification with applications to probation data	4
Spatial predictions on physically constrained domains: Applications to Arctic sea salinity data	4
Complex discontinuity designs using covariates: Impact of school grade retention on later life outcomes in Chile	4
Bayesian local false discovery rate for sparse count data with application to the discovery of hotspots in protein domains	4
Neural networks for extreme quantile regression with an application to forecasting of flood risk	4
CeCNN: Copula-enhanced convolutional neural networks in joint prediction of refraction error and axial length based on ultra-widefield fundus images	4
Estimating product cannibalisation in wholesale using multivariate Hawkes processes with inhibition	4
Flexible instrumental variable models with Bayesian additive regression trees	4
Integrating Mendelian randomization with causal mediation analyses for characterizing direct and indirect exposure-to-outcome effects	4
Learning common structures in a collection of networks. An application to food webs	3
Scalable change-point and anomaly detection in cross-correlated data with an application to condition monitoring	3
Inflection points in community-level homeless rates	3
Predicting competitions by combining conditional logistic regression and subjective Bayes: An Academy Awards case study	3
Functional factor modeling of brain connectivity	3
Design-based mapping of land use/land cover classes with bootstrap estimation of precision by nearest-neighbour interpolation	3
A functional-data approach to the Argo data	3
Regularized fingerprinting in detection and attribution of climate change with weight matrix optimizing the efficiency in scaling factor estimation	3
Aggregated pairwise classification of elastic planar shapes	3
Estimating functional parameters for understanding the impact of weather and government interventions on COVID-19 outbreak	3
Nonparametric additive value functions: Interpretable reinforcement learning with an application to surgical recovery	3
A Riemann manifold model framework for longitudinal changes in physical activity patterns	3
Multimodel ensemble analysis with neural network Gaussian processes	3
A high-dimensional approach to measure connectivity in the financial sector	3
Truncated rank-based tests for two-part models with excessive zeros and applications to microbiome data	3
Model-robust Bayesian design through generalised additive models for monitoring submerged shoals	3
Learn then test: Calibrating predictive algorithms to achieve risk control	3
Bivariate hierarchical Bayesian model for combining summary measures and their uncertainties from multiple sources	3
Markov random field models for vector-based representations of landscapes	3
Thompson sampling for zero-inflated count outcomes with an application to the Drink Less mobile health study	3
Identifying boundaries in spatially continuous risk surfaces from spatially aggregated disease count data	3
What makes forest-based heterogeneous treatment effect estimators work?	3
Spatiotemporal wildfire modeling through point processes with moderate and extreme marks	3
Estimating the effectiveness of permanent price reductions for competing products using multivariate Bayesian structural time series models	3
Estimation of Gaussian directed acyclic graphs using partial ordering information with applications to DREAM3 networks and dairy cattle data	3
How many refugees and migrants died trying to reach Europe? Joint population size and total estimation	3
Learning risk preferences in Markov decision processes: An application to the fourth down decision in the national football league	3
A continuous-time semi-Markov model for animal movement in a dynamic environment	3
A Bayesian precision medicine framework for calibrating individualized therapeutic indices in cancer	3
Bayesian joint modeling of chemical structure and dose response curves	3

Heterogeneous network analysis of disease clinical treatment measures via mining electronic medical record data	3
Ice model calibration using semicontinuous spatial data	3
Bayesian decision theory for tree-based adaptive screening tests with an application to youth delinquency	3
Bayesian inference for partial orders from random linear extensions: Power relations from 12th century royal acta	3
The properties of covariate-adaptive randomization procedures with possibly unequal allocation ratio	3
Statistical curve models for inferring 3D chromatin architecture	3
Do forecasts of bankruptcy cause bankruptcy? A machine learning sensitivity analysis	3
Are made and missed different? An analysis of field goal attempts of professional basketball players via depth based testing procedure	3
Spatial functional data modeling of plant reflectances	3
Sparse block signal detection and identification for shared cross-trait association analysis	3
Inhomogeneous spatio-temporal point processes on linear networks for visitors’ stops data	3
Bayesian non-homogeneous hidden Markov model with variable selection for investigating drivers of seizure risk cycling	3
Structure learning for zero-inflated counts with an application to single-cell RNA sequencing data	3
A spatial autoregressive random forest algorithm for small-area spatial prediction	2
Improving exoplanet detection power: Multivariate Gaussian process models for stellar activity	2
Estimating heterogeneous gene regulatory networks from zero-inflated single-cell expression data	2
Higher criticism for discriminating word-frequency tables and authorship attribution	2
Analyzing environmental bioassays with spatial odds, risk, and survival probability ratio regressions	2
Athlete rating in multicompetitor games with scored outcomes via monotone transformations	2
Assessing selection bias in regression coefficients estimated from nonprobability samples with applications to genetics and demographic surveys	2
Function-on-function regression for the identification of epigenetic regions exhibiting windows of susceptibility to environmental exposures	2
Binned multinomial logistic regression for integrative cell-type annotation	2
Privacy-preserving, communication-efficient, and target-flexible hospital quality measurement	2
Causal inference for time-varying treatments in latent Markov models: An application to the effects of remittances on poverty dynamics	2
Modeling trajectories using functional linear differential equations	2
Clustering on the torus by conformal prediction	2
Federated learning of robust individualized decision rules with application to heterogeneous multihospital sepsis population	2
Robust sensible adversarial learning of deep neural networks for image classification	2
Analysis of presence-only data via exact Bayes, with model and effects identification	2
Designing experiments for estimating an appropriate outlet size for a silo type problem	2
Qini-based uplift regression	2
The causal effect of a timeout at stopping an opposing run in the NBA	2
Scalable test of statistical significance for protein-DNA binding changes with insertion and deletion of bases in the genome	2
Estimating the average treatment effect in randomized clinical trials with all-or-none compliance	2
Bayesian multiple instance classification based on hierarchical probit regression	2
Manifold valued data analysis of samples of networks, with applications in corpus linguistics	2
Modeling past event feedback through biomarker dynamics in the multistate event analysis for cardiovascular disease data	2
Semiparametric bivariate hierarchical state space model with application to hormone circadian relationship	2
A statistical approach to estimating adsorption-isotherm parameters in gradient-elution preparative liquid chromatography	2
Predictive inference for travel time on transportation networks	2
Estimating animal utilization distributions from multiple data types: A joint spatiotemporal point process framework	2
A deep neural network two-part model and feature importance test for semicontinuous data	2
A general framework for penalized mixed-effects multitask learning with applications on DNA methylation surrogate biomarkers creation	2
Diagnosis-group-specific transitional care program recommendations for 30-day rehospitalization reduction	2
Continuous and atlas-free analysis of brain structural connectivity	2
Subgroup identification and variable selection for treatment decision making	2
A Bayesian machine learning approach for estimating heterogeneous survivor causal effects: Applications to a critical care trial	2
Estrogen receptor expression on breast cancer patients’ survival under shape-restricted Cox regression model	2
A robust Bayesian meta-analysis for estimating the Hubble constant via time delay cosmography	2
Doubly-online changepoint detection for monitoring health status during sports activities	2
Sensitivity analysis of wind energy resources with Bayesian non-Gaussian and nonstationary functional ANOVA	2
Bayesian Cox regression for large-scale inference with applications to electronic health records	2
A Bayesian panel vector autoregression to analyze the impact of climate shocks on high-income economies	2
Network-level traffic flow prediction: Functional time series vs. functional neural network approach	2
A flexible sensitivity analysis approach for unmeasured confounding with multiple treatments and a binary outcome with application to SEER-Medicare lung cancer data	2
The scalable birth–death MCMC algorithm for mixed graphical model learning with application to genomic data integration	2
Extended Beta models for poverty mapping. An application integrating survey and remote sensing data in Bangladesh	2
Has the Covid-19 outbreak capsized the predictive performance of Bayesian VAR models with cointegration and time-varying volatility?	2
Permutation tests under a rotating sampling plan with clustered data	2
Probabilistic forecasting of the Arctic sea ice edge with contour modeling	2
Bayesian inference for brain activity from functional magnetic resonance imaging collected at two spatial resolutions	2
Ordinal probit functional outcome regression with application to computer-use behavior in rhesus monkeys	2
Risk-aware restricted outcome learning for individualized treatment regimes of schizophrenia	2
Bayesian learning of Covid-19 vaccine safety while incorporating adverse events ontology	2
Bayesian sparse vector autoregressive switching models with application to human gesture phase segmentation	2
Modelled approximations to the ideal filter with application to GDP and its components	2
A flexible Bayesian framework to estimate age- and cause-specific child mortality over time from sample registration data	2
A population-aware retrospective regression to detect genome-wide variants with sex difference in allele frequency	2
Is the price cap for gas useful? Evidence from European countries	2
Semiparametric modeling of SARS-CoV-2 transmission using tests, cases, deaths, and seroprevalence data	2
A Bayesian hierarchical model for combining multiple data sources in population size estimation	2
A Bayesian accelerated failure time model for interval censored three-state screening outcomes	2
Bayesian multistudy factor analysis for high-throughput biological data	1
A semiparametric method for risk prediction using integrated electronic health record data	1
Additive density-on-scalar regression in Bayes Hilbert spaces with an application to gender economics	1
Generalized fiducial factor: An alternative to the Bayes factor for forensic identification of source problems	1
A Pólya Tree modelling framework for batch-mark data	1
Bounding the local average treatment effect in an instrumental variable analysis of engagement with a mobile intervention	1
Scalable multiple network inference with the joint graphical horseshoe	1
Robust joint modelling of left-censored longitudinal data and survival data with application to HIV vaccine studies	1
Statistical inference for regression with imputed binary covariates with application to emotion recognition	1
EDITORIAL: Statistical significance, P-values, and replicability	1
Statistical shape analysis of brain arterial networks (BAN)	1
Analyzing animal escape data with circular nonparametric multimodal regression	1
The assessment of replication success based on relative effect size	1
Variance as a predictor of health outcomes: Subject-level trajectories and variability of sex hormones to predict body fat changes in peri- and postmenopausal women	1
Detecting distributional differences in labeled sequence data with application to tropical cyclone satellite imagery	1
Model-independent detection of new physics signals using interpretable SemiSupervised classifier tests	1
Accounting for survey design in Bayesian disaggregation of survey-based areal estimates of proportions: An application to the American Community Survey	1
A new design for observational studies applied to the study of the effects of high school football on cognition late in life	1
Sensitivity analysis for evaluating principal surrogate endpoints relaxing the equal early clinical risk assumption	1
Additive stacking for disaggregate electricity demand forecasting	1
Correction to: Spatiotemporal wildfire modeling through point processes with moderate and extreme marks	1
Probabilistic contrastive dimension reduction for case-control study data	1
Functional random effects modeling of brain shape and connectivity	1