Annals of Applied Statistics

Article	Citations
Composite mixture of log-linear models with application to psychiatric studies	29
A compositional model to assess expression changes from single-cell RNA-seq data	28
Latent variable models for multivariate dyadic data with zero inflation: Analysis of intergenerational exchanges of family support	21
Inferring synergistic and antagonistic interactions in mixtures of exposures	21
Likelihood-based bacterial identification approach for bimicrobial mass spectrometry data	18
Accurate estimation of rare cell-type fractions from tissue omics data via hierarchical deconvolution	17
Analysing the causal effect of London cycle superhighways on traffic congestion	17
Multilevel time-series models for small area estimation at different frequencies and domain levels	17
ALPHA: Audit that learns from previously hand-audited ballots	17
Modeling the social media relationships of Irish politicians using a generalized latent space stochastic blockmodel	17
Uncertainty quantification of a computer model for binary black hole formation	15
A latent mixture model for heterogeneous causal mechanisms in Mendelian randomization	15
Predicting gender employment discrepancies: A multivariate Fay-Herriot model for transformed proportions	15
Graph link prediction in computer networks using Poisson matrix factorisation	15
Sequential Monte Carlo for sampling balanced and compact redistricting plans	14
The risk of maternal complications after cesarean delivery: Near-far matching for instrumental variables study designs with large observational datasets	14
Statistical matching and subclassification with a continuous dose: Characterization, algorithm, and application to a health outcomes study	14
Modeling panels of extremes	13
Dirichlet-tree multinomial mixtures for clustering microbiome compositions	13
Two-sample tests for multivariate repeated measurements of histogram objects with applications to wearable device data	13
Zero-inflated quantile rank-score based test (ZIQRank) with application to scRNA-seq differential gene expression analysis	13
Control charts for dynamic process monitoring with an application to air pollution surveillance	13
Marginally calibrated response distributions for end-to-end learning in autonomous driving	12
On the fair comparison of optimization algorithms in different machines	12
Unsupervised streaming anomaly detection for instrumented infrastructure	12

Markov-modulated Hawkes processes for modeling sporadic and bursty event occurrences in social interactions	12
Testing for the causal mediation effects of multiple mediators using the kernel machine difference method in genome-wide epigenetic studies	11
DeepMap: Deep learning-based single-cell data integration using iterative cell matching and structure preservation constraints	11
Real-time mechanistic Bayesian forecasts of COVID-19 mortality	10
A Bayesian decision framework for optimizing sequential combination antiretroviral therapy in people with HIV	10
Flexible multivariate spatiotemporal Hawkes process models of terrorism	10
Inference for stochastic kinetic models from multiple data sources for joint estimation of infection dynamics from aggregate reports and virological data	10
Joint mixed membership modeling of multivariate longitudinal and survival data for learning the individualized disease progression	9
Partial-mastery cognitive diagnosis models	9
Semiparametric linear regression with an interval-censored covariate in the atherosclerosis risk in communities study	9
Disentangling the structure of ecological bipartite networks from observation processes	9
Data-driven chimney fire risk prediction using machine learning and point process tools	9
Modeling cell populations measured by flow cytometry with covariates using sparse mixture of regressions	9
PoD-BIN: A probability of decision Bayesian interval design for time-to-event dose-finding trials with multiple toxicity grades	9
Identifying peer influence in therapeutic communities adjusting for latent homophily	9
Risk set matched difference-in-differences for the analysis of effect modification in an observational study on the impact of gun violence on health outcomes	9
A privacy-preserved and high-utility synthesis strategy for risk-based stratified subgroups of the Canadian scleroderma patient registry data	8
Variable screening and spatial smoothing in Fréchet regression with application to diffusion tensor imaging	8
Bayesian hierarchical random-effects meta-analysis and design of phase I clinical trials	8
Global estimation and scenario-based projections of sex ratio at birth and missing female births using a Bayesian hierarchical time series mixture model	8
Approximate Bayesian inference for analysis of spatiotemporal flood frequency data	8
Randomization inference for cluster-randomized test-negative designs with application to Dengue studies: Unbiased estimation, partial compliance, and stepped-wedge design	8
Continuous-time modelling of behavioural responses in animal movement	7
Latent conjunctive Bayesian network: Unify attribute hierarchy and Bayesian network for cognitive diagnosis	7
ANOPOW for replicated nonstationary time series in experiments	7
Modeling structure and country-specific heterogeneity in misclassification matrices of verbal autopsy-based cause of death classifiers	7
Tensor quantile regression with low-rank tensor train estimation	7
Varying impacts of letters of recommendation on college admissions	7
Bayesian multivariate sparse functional principal components analysis with application to longitudinal microbiome multiomics data	7
Generalized theme dictionary models for association pattern discovery	7
Penalized joint models of high-dimensional longitudinal biomarkers and a survival outcome	7
EBiCop: Ensemble bivariate copulas for modeling multivariate cyber data breach risks	7
Predicting milk traits from spectral data using Bayesian probabilistic partial least squares regression	7
An efficient doubly-robust imputation framework for longitudinal dropout, with an application to an Alzheimer’s clinical trial	7
Latent level correlation modeling of multivariate discrete-valued financial time series	7
Estimating COVID-19 vaccine protection rates via dynamic epidemiological models—a study of 10 countries	6
Social distancing and COVID-19: Randomization inference for a structured dose-response relationship	6
Bidimensional linked matrix factorization for pan-omics pan-cancer analysis	6
Modelling extremes of spatial aggregates of precipitation using conditional methods	6
Pairwise nonlinear dependence analysis of genomic data	6
Estimation and inference for exposure effects with latency in the Cox proportional hazards model in the presence of exposure measurement error	6
Corrigendum Modeling biomarker ratios with gamma distributed components	6
Early effects of 2014 U.S. Medicaid expansions on mortality: Design-based inference for impacts on small subgroups despite small-cell suppression	6
Readability prediction: How many features are necessary?	6
Nonparametric importance sampling for wind turbine reliability analysis with stochastic computer models	6
Leveraging cellphone-derived mobility networks to assess Covid-19 travel risk	6
An extension of estimating equations to model longitudinal medical cost trajectory with Medicare claims data linked to SEER cancer registry	6
Subbotin graphical models for extreme value dependencies with applications to functional neuronal connectivity	6
Using proxies to improve forecast evaluation	6
Communication network dynamics in a large organizational hierarchy	6

Postelection analysis of presidential election/poll data	6
Endogeneity and moments in time series momentum’s predictability test	6
Matrix completion methods for the total electron content video reconstruction	6
Outcome-guided disease subtyping by generative model and weighted joint likelihood in transcriptomic applications	6
Association and causation: Attributes and effects of judges in equal employment opportunity commission litigation outcomes	5
TEAM: A multiple testing algorithm on the aggregation tree for flow cytometry analysis	5
Design-based inference for spatial experiments under unknown interference	5
Compressed spectral screening for large-scale differential correlation analysis with application in selecting Glioblastoma gene modules	5
Contrastive latent variable modeling with application to case-control sequencing experiments	5
Pan-disease clustering analysis of the trend of period prevalence	5
Comparing baseball players across eras via novel Full House Modeling	5
Probabilistic HIV recency classification—a logistic regression without labeled individual level training data	5
Functional clustering for longitudinal associations between social determinants of health and stroke mortality in the U.S.	5
A latent variable approach for modeling relational data with multiple receivers	5
Tensor-variate finite mixture modeling for the analysis of university professor remuneration	5
Computationally efficient Bayesian unit-level models for non-Gaussian data under informative sampling with application to estimation of health insurance coverage	5
Tracking hematopoietic stem cell evolution in a Wiskott–Aldrich clinical trial	5
Assessing treatment effect through compliance score in randomized trials with noncompliance	5
A three-state coupled Markov switching model for COVID-19 outbreaks across Quebec based on hospital admissions	5
Individual dynamic prediction for cure and survival based on longitudinal biomarkers	5
Nonparametric causal decomposition of group disparities	5
Estimating product cannibalisation in wholesale using multivariate Hawkes processes with inhibition	4
Flexible instrumental variable models with Bayesian additive regression trees	4
Integrating Mendelian randomization with causal mediation analyses for characterizing direct and indirect exposure-to-outcome effects	4
Temporal network influence model with application to the COVID-19 population flow network	4
Parameter calibration in wake effect simulation model with stochastic gradient descent and stratified sampling	4
Semiparametric estimation for dynamic networks with shifted connecting intensities	4
Knockoffs with side information	4
Modeling animal movement with directional persistence and attractive points	4
Network differential connectivity analysis	4
Benefits and costs of matching prior to a difference in differences analysis when parallel trends does not hold	4
Multivariate mixed membership modeling: Inferring domain-specific risk profiles	4
Bayesian model selection: Application to the adjustment of fundamental physical constants	4
Network method for voxel-pair-level brain connectivity analysis under spatial-contiguity constraints	4
Estimating Covid-19 transmission time using Hawkes point processes	4
Latent subgroup identification in image-on-scalar regression	4
Tensor regression for incomplete observations with application to longitudinal studies	4
Improved inference on risk measures for univariate extremes	4
Joint modeling of playing time and purchase propensity in massively multiplayer online role-playing games using crossed random effects	4
Causal inference for the effect of mobility on COVID-19 deaths	4
Deconvolution analysis of spatial transcriptomics by multiplicative-additive Poisson-gamma models	4
Joint stochastic simulation of extreme coastal and offshore significant wave heights	4
Graph-aware modeling of brain connectivity networks	4
Assessing aquatic toxicity assessment via a clustered variance model	4
Nested conformal prediction sets for classification with applications to probation data	4
Spatial predictions on physically constrained domains: Applications to Arctic sea salinity data	4
Complex discontinuity designs using covariates: Impact of school grade retention on later life outcomes in Chile	4
Bayesian local false discovery rate for sparse count data with application to the discovery of hotspots in protein domains	4
Neural networks for extreme quantile regression with an application to forecasting of flood risk	4
CeCNN: Copula-enhanced convolutional neural networks in joint prediction of refraction error and axial length based on ultra-widefield fundus images	4
Spatial functional data modeling of plant reflectances	3
Are made and missed different? An analysis of field goal attempts of professional basketball players via depth based testing procedure	3
Inhomogeneous spatio-temporal point processes on linear networks for visitors’ stops data	3
Sparse block signal detection and identification for shared cross-trait association analysis	3
Bayesian non-homogeneous hidden Markov model with variable selection for investigating drivers of seizure risk cycling	3
Structure learning for zero-inflated counts with an application to single-cell RNA sequencing data	3
Learning common structures in a collection of networks. An application to food webs	3
Scalable change-point and anomaly detection in cross-correlated data with an application to condition monitoring	3
Inflection points in community-level homeless rates	3
Predicting competitions by combining conditional logistic regression and subjective Bayes: An Academy Awards case study	3
Functional factor modeling of brain connectivity	3
Design-based mapping of land use/land cover classes with bootstrap estimation of precision by nearest-neighbour interpolation	3
A functional-data approach to the Argo data	3
Aggregated pairwise classification of elastic planar shapes	3
Regularized fingerprinting in detection and attribution of climate change with weight matrix optimizing the efficiency in scaling factor estimation	3
Nonparametric additive value functions: Interpretable reinforcement learning with an application to surgical recovery	3
Estimating functional parameters for understanding the impact of weather and government interventions on COVID-19 outbreak	3
Multimodel ensemble analysis with neural network Gaussian processes	3
A Riemann manifold model framework for longitudinal changes in physical activity patterns	3
A high-dimensional approach to measure connectivity in the financial sector	3
Truncated rank-based tests for two-part models with excessive zeros and applications to microbiome data	3
Model-robust Bayesian design through generalised additive models for monitoring submerged shoals	3
Learn then test: Calibrating predictive algorithms to achieve risk control	3
Bivariate hierarchical Bayesian model for combining summary measures and their uncertainties from multiple sources	3
Markov random field models for vector-based representations of landscapes	3
Thompson sampling for zero-inflated count outcomes with an application to the Drink Less mobile health study	3
What makes forest-based heterogeneous treatment effect estimators work?	3
Identifying boundaries in spatially continuous risk surfaces from spatially aggregated disease count data	3
Estimating the effectiveness of permanent price reductions for competing products using multivariate Bayesian structural time series models	3
Spatiotemporal wildfire modeling through point processes with moderate and extreme marks	3

How many refugees and migrants died trying to reach Europe? Joint population size and total estimation	3
Estimation of Gaussian directed acyclic graphs using partial ordering information with applications to DREAM3 networks and dairy cattle data	3
A continuous-time semi-Markov model for animal movement in a dynamic environment	3
Learning risk preferences in Markov decision processes: An application to the fourth down decision in the national football league	3
A Bayesian precision medicine framework for calibrating individualized therapeutic indices in cancer	3
Bayesian joint modeling of chemical structure and dose response curves	3
Heterogeneous network analysis of disease clinical treatment measures via mining electronic medical record data	3
Ice model calibration using semicontinuous spatial data	3
Bayesian decision theory for tree-based adaptive screening tests with an application to youth delinquency	3
Bayesian inference for partial orders from random linear extensions: Power relations from 12th century royal acta	3
The properties of covariate-adaptive randomization procedures with possibly unequal allocation ratio	3
Do forecasts of bankruptcy cause bankruptcy? A machine learning sensitivity analysis	3
Statistical curve models for inferring 3D chromatin architecture	3