OOIR: Observatory of International Research

Papers

(The H4-Index of Computational and Structural Biotechnology Journal is 36. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-04-01 to 2025-04-01.)

Article	Citations
UPIMAPI, reCOGnizer and KEGGCharter: Bioinformatics tools for functional annotation and visualization of (meta)-omics datasets	175
A DICOM-based standard for quantitative physical rehabilitation	166
Transcriptomic investigations of polymyxins and colistin/sulbactam combination against carbapenem-resistant Acinetobacter baumannii	142
A shared mechanism for TNP-ATP recognition by members of the P2X receptor family	117
VIBES: A consensus subtyping of the vaginal microbiota reveals novel classification criteria	109
Genome-wide analysis reveals the contributors to fast molecular evolution of the Chinese hook snout carp (Opsariichthys bidens)	109
The molecular subtypes of autoimmune diseases	91
Deep-HPI-pred: An R-Shiny applet for network-based classification and prediction of Host-Pathogen protein-protein interactions	90
Enhancing prediction of short linear protein motifs with Wregex 3.0	84
cPEPmatch Webserver: A comprehensive tool and database to aid rational design of cyclic peptides for drug discovery	74
Network-based analysis of heterogeneous patient-matched brain and extracranial melanoma metastasis pairs reveals three homogeneous subgroups	72
Comprehensive integration of single-cell RNA and transcriptome RNA sequencing to establish a pyroptosis-related signature for improving prognostic prediction of gastric cancer	67
Stabilization of the retromer complex: Analysis of novel binding sites of bis-1,3-phenyl guanylhydrazone 2a to the VPS29/VPS35 interface	63
RCDdb: A manually curated database and analysis platform for regulated cell death	61
Personalized analysis of human cancer multi-omics for precision oncology	58
Phosphopeptide binding to the N-SH2 domain of tyrosine phosphatase SHP2 correlates with the unzipping of its central β-sheet	53
Discovery of a novel marine Bacteroidetes with a rich repertoire of carbohydrate-active enzymes	51
Curvature-enhanced graph convolutional network for biomolecular interaction prediction	50
Transnational learning and teaching activities: Smart Healthcare Engineering	48
TCMM: A unified database for traditional Chinese medicine modernization and therapeutic innovations	47
Revealing SARS-CoV-2 Mpro mutation cold and hot spots: Dynamic residue network analysis meets machine learning	47
Cell-to-cell distance that combines gene expression and gene embeddings	46
InTiCAR: Network-based identification of significant inter-tissue communicators for autoimmune diseases	46
Landscape of intrinsically disordered proteins in mental disorder diseases	45
Structural characteristics, functions, and counteracting strategies of biofilms in Staphylococcus aureus	45

Protein allosteric site identification using machine learning and per amino acid residue reported internal protein nanoenvironment descriptors	45
ppHiC: Interactive exploration of Hi-C results on the ProteinPaint web portal	45
Rapid profiling of carcinogenic types of Helicobacter pylori infection via deep learning analysis of label-free SERS spectra of human serum	44
Biased activation of the vasopressin V2 receptor probed by molecular dynamics simulations, NMR and pharmacological studies	42
Nanopore sequencing of protozoa: Decoding biological information on a string of biochemical molecules into human-readable signals	42
Structure-based protein and small molecule generation using EGNN and diffusion models: A comprehensive review	41
A heterogeneous information network learning model with neighborhood-level structural representation for predicting lncRNA-miRNA interactions	39
Free energy landscape of the PI3Kα C-terminal activation	38
Cultivation driven transcriptomic changes in the wild-type and mutant strains of Rhodospirillum rubrum	38
WUREN: Whole-modal union representation for epitope prediction	37
Insulin-related traits and prostate cancer: A Mendelian randomization study	36
AFSC: A self-supervised augmentation-free spatial clustering method based on contrastive learning for identifying spatial domains	36
Unsupervised machine learning for risk stratification and identification of relevant subgroups of ascending aorta dimensions using cardiac CT and clinical data	36
Physical-aware model accuracy estimation for protein complex using deep learning method	36
Identification and biophysical characterization of epitope atlas of Porcine Reproductive and Respiratory Syndrome Virus	36
Development of a new data management system for the study of the gut microbiome of children who are small for their gestational age	36