OOIR: Observatory of International Research

Papers

(The H4-Index of Computational and Structural Biotechnology Journal is 44. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-08-01 to 2025-08-01.)

Article	Citations
Streptomyces coelicolor macrodomain hydrolase SCO6735 cleaves thymidine-linked ADP-ribosylation of DNA	226
An integrated protein structure fitness scoring approach for identifying native-like model structures	213
NGS allele counts versus called genotypes for testing genetic association	166
The second intracellular loop of the yeast Trk1 potassium transporter is involved in regulation of activity, and interaction with 14–3-3 proteins	143
Integrated metabolomics and network analysis reveal changes in lipid metabolisms of tripterygium glycosides tablets in rats with collagen-induced arthritis	134
Identification and biophysical characterization of epitope atlas of Porcine Reproductive and Respiratory Syndrome Virus	130
WUREN: Whole-modal union representation for epitope prediction	118
Corrigendum to “Cryo-EM reveals architectural diversity in active rotavirus particles” [Comput. Struct. Biotechnol. J. 17 (2019) 1178–1183]	106
EthnoHERBS: Harnessing traditional herbal knowledge for biodiversity conservation and innovative health solutions	102
Nextcast: A software suite to analyse and model toxicogenomics data	94
Comprehensive exploration of JQ1 and GSK2801 targets in breast cancer using network pharmacology and molecular modeling approaches	88
Agreement and disagreement in pediatric functional neurological symptom disorders: Comparing patient reported outcome measures (PROMs) and clinician assessments	83
In silico and in vitro approaches allow the identification of the Prosystemin molecular network	72
Predicting zeta potential of liposomes from their structure: A nano-QSPR model for DOPE, DC-Chol, DOTAP, and EPC formulations	72
A drug repurposing method based on inhibition effect on gene regulatory network	72
Network-based prioritization of cancer biomarkers by phenotype-driven module detection and ranking	68
cPEPmatch Webserver: A comprehensive tool and database to aid rational design of cyclic peptides for drug discovery	62
Optimizing the Illumina COVIDSeq laboratorial and bioinformatics pipeline on thousands of samples for SARS-CoV-2 Variants of Concern tracking	59
Consistencies and contradictions in different polymer models of chromatin architecture	59
Artificial intelligence predictive system of individual survival rate for lung adenocarcinoma	59
Entropy-extreme model for predicting the development of cyber epidemics at early stages	58
MUG: A mutation overview of GPCR subfamily A17 receptors	57
Advanced biokinetic and hydrodynamic modelling to support and optimize the design of full-scale high rate algal ponds	56
Predicting cellular adaptation proteins dependent on eIF2α regulation under stress conditions: physiological and pathophysiological implications in neuronal function	56
Deep5mC: Predicting 5-methylcytosine (5mC) methylation status using a deep learning transformer approach	55

DIPAN: Detecting personalized intronic polyadenylation derived neoantigens from RNA sequencing data	55
MMRT: MultiMut Recursive Tree for predicting functional effects of high-order protein variants from low-order variants	55
Structural elucidation of four fungal hydrophobins belonging to classes I and II: Results from Alphafold and accelerated molecular dynamics simulations	53
Altered heme metabolism and hemoglobin concentration due to empirical antibiotics-induced gut dysbiosis in preterm infants	51
Phylogenetic tree-based amino acid sequence generation for proteomics data analysis of unknown species	50
Evolution is in the details: Regulatory differences in modern human and Neanderthal	49
DiabetesOmic: A comprehensive multi-omics diabetes database	48
Discovery of a novel marine Bacteroidetes with a rich repertoire of carbohydrate-active enzymes	48
Ranking pre-trained speech embeddings in Parkinson's disease detection: Does Wav2Vec 2.0 outperform its 1.0 version across speech modes and languages?	48
Data pre-processing for analyzing microbiome data – A mini review	46
Free energy landscape of the PI3Kα C-terminal activation	46
Automated machine learning in nanotoxicity assessment: A comparative study of predictive model performance	46
What remains from living cells in bacterial lysate-based cell-free systems	45
Towards accurate and efficient diagnoses in nephropathology: An AI-based approach for assessing kidney transplant rejection	45
The balance between photosynthesis and respiration explains the niche differentiation between Crocosphaera and Cyanothece	44
Evidence of a SARS-CoV-2 double Spike mutation D614G/S939F potentially affecting immune response of infected subjects	44
Computation-aided studies related to the induction of specialized metabolite biosynthesis in microbial co-cultures: An introductory overview	44
Biomarker discovery process at binomial decision point (2BDP): Analytical pipeline to construct biomarker panel	44
Improved inter-residue contact prediction via a hybrid generative model and dynamic loss function	44