OOIR: Observatory of International Research

Papers

(The H4-Index of Computational and Structural Biotechnology Journal is 40. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-06-01 to 2025-06-01.)

Article	Citations
Streptomyces coelicolor macrodomain hydrolase SCO6735 cleaves thymidine-linked ADP-ribosylation of DNA	197
Optimizing the Illumina COVIDSeq laboratorial and bioinformatics pipeline on thousands of samples for SARS-CoV-2 Variants of Concern tracking	196
An integrated protein structure fitness scoring approach for identifying native-like model structures	154
Agreement and disagreement in pediatric functional neurological symptom disorders: Comparing patient reported outcome measures (PROMs) and clinician assessments	130
Identification of (Z)-2-benzylidene-dihydroimidazothiazolone derivatives as tyrosinase inhibitors: Anti-melanogenic effects and in silico studies	123
NGS allele counts versus called genotypes for testing genetic association	122
Network-based prioritization of cancer biomarkers by phenotype-driven module detection and ranking	109
Biomarker discovery process at binomial decision point (2BDP): Analytical pipeline to construct biomarker panel	96
The second intracellular loop of the yeast Trk1 potassium transporter is involved in regulation of activity, and interaction with 14–3-3 proteins	93
Comprehensive exploration of JQ1 and GSK2801 targets in breast cancer using network pharmacology and molecular modeling approaches	85
MUG: A mutation overview of GPCR subfamily A17 receptors	79
Integrated metabolomics and network analysis reveal changes in lipid metabolisms of tripterygium glycosides tablets in rats with collagen-induced arthritis	77
Identification and biophysical characterization of epitope atlas of Porcine Reproductive and Respiratory Syndrome Virus	69
WUREN: Whole-modal union representation for epitope prediction	67
Corrigendum to “Cryo-EM reveals architectural diversity in active rotavirus particles” [Comput. Struct. Biotechnol. J. 17 (2019) 1178–1183]	63
Free energy landscape of the PI3Kα C-terminal activation	60
Artificial intelligence predictive system of individual survival rate for lung adenocarcinoma	57
Nextcast: A software suite to analyse and model toxicogenomics data	57
EthnoHERBS: Harnessing traditional herbal knowledge for biodiversity conservation and innovative health solutions	55
DIPAN: Detecting personalized intronic polyadenylation derived neoantigens from RNA sequencing data	55
dsCellNet: A new computational tool to infer cell–cell communication networks in the developing and aging brain	54
Discovery of a novel marine Bacteroidetes with a rich repertoire of carbohydrate-active enzymes	54
In silico and in vitro approaches allow the identification of the Prosystemin molecular network	54
Using molecular dynamics simulations to interrogate T cell receptor non-equilibrium kinetics	52
Automated machine learning in nanotoxicity assessment: A comparative study of predictive model performance	50

Predictive dynamic control accurately maps the design space for 2,3-butanediol production	50
Consistencies and contradictions in different polymer models of chromatin architecture	49
Prediction of protein-ligand binding affinity with deep learning	49
Multi-omics landscape and clinical significance of a SMAD4-driven immune signature: Implications for risk stratification and frontline therapies in pancreatic cancer	48
What remains from living cells in bacterial lysate-based cell-free systems	48
Entropy-extreme model for predicting the development of cyber epidemics at early stages	46
Towards accurate and efficient diagnoses in nephropathology: An AI-based approach for assessing kidney transplant rejection	43
VTAM: A robust pipeline for validating metabarcoding data using controls	43
The balance between photosynthesis and respiration explains the niche differentiation between Crocosphaera and Cyanothece	42
Design rules applied to silver nanoparticles synthesis: A practical example of machine learning application.	42
Advanced biokinetic and hydrodynamic modelling to support and optimize the design of full-scale high rate algal ponds	42
UPIMAPI, reCOGnizer and KEGGCharter: Bioinformatics tools for functional annotation and visualization of (meta)-omics datasets	42
Computation-aided studies related to the induction of specialized metabolite biosynthesis in microbial co-cultures: An introductory overview	41
A novel exosome-derived prognostic signature and risk stratification for breast cancer based on multi-omics and systematic biological heterogeneity	41
Evidence of a SARS-CoV-2 double Spike mutation D614G/S939F potentially affecting immune response of infected subjects	40
A drug repurposing method based on inhibition effect on gene regulatory network	40
Improved inter-residue contact prediction via a hybrid generative model and dynamic loss function	40