Journal of Biomedical Semantics

Papers
(The TQCC of Journal of Biomedical Semantics is 6. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-08-01 to 2025-08-01.)
ArticleCitations
PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature43
Extending electronic medical records vector models with knowledge graphs to improve hospitalization prediction26
Comparing generative and extractive approaches to information extraction from abstracts describing randomized clinical trials19
Gene expression knowledge graph for patient representation and diabetes prediction18
Improving reusability along the data life cycle: a regulatory circuits case study18
An annotated dataset for extracting gene-melanoma relations from scientific literature17
Explanatory argumentation in natural language for correct and incorrect medical diagnoses17
Semantic classification of Indonesian consumer health questions14
Enriching the FIDEO ontology with food-drug interactions from online knowledge sources14
New and revised gene ontology biological process terms describe multiorganism interactions critical for understanding microbial pathogenesis and sequences of concern14
Syntax-based transfer learning for the task of biomedical relation extraction12
Features of a FAIR vocabulary11
BioBLP: a modular framework for learning on multimodal biomedical knowledge graphs11
Multi-task transfer learning for the prediction of entity modifiers in clinical text: application to opioid use disorder case detection10
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data10
Assessing resolvability, parsability, and consistency of RDF resources: a use case in rare diseases9
MedLexSp – a medical lexicon for Spanish medical natural language processing9
Residual refinement for interactive skin lesion segmentation8
Semantically enabling clinical decision support recommendations7
Development and validation of the early warning system scores ontology6
Semantics in action: a guide for representing clinical data elements with SNOMED CT6
Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis6
An extensible and unifying approach to retrospective clinical data modeling: the BrainTeaser Ontology6
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