OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Biomedical Semantics is 5. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-01-01 to 2026-01-01.)

Article	Citations
Comparing generative and extractive approaches to information extraction from abstracts describing randomized clinical trials	51
PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature	29
Extending electronic medical records vector models with knowledge graphs to improve hospitalization prediction	29
Improving reusability along the data life cycle: a regulatory circuits case study	27
Semantic classification of Indonesian consumer health questions	21
Gene expression knowledge graph for patient representation and diabetes prediction	21
Mapping between clinical and preclinical terminologies: eTRANSAFE’s Rosetta stone approach	21
An annotated dataset for extracting gene-melanoma relations from scientific literature	19
Enriching the FIDEO ontology with food-drug interactions from online knowledge sources	18
Explanatory argumentation in natural language for correct and incorrect medical diagnoses	18
BioBLP: a modular framework for learning on multimodal biomedical knowledge graphs	17
The CLEAR Principle: organizing data and metadata into semantically meaningful types of FAIR Digital Objects to increase their human explorability and cognitive interoperability	14
Features of a FAIR vocabulary	11
MedLexSp – a medical lexicon for Spanish medical natural language processing	11
New and revised gene ontology biological process terms describe multiorganism interactions critical for understanding microbial pathogenesis and sequences of concern	11
Multi-task transfer learning for the prediction of entity modifiers in clinical text: application to opioid use disorder case detection	10
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data	9
Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis	8
An extensible and unifying approach to retrospective clinical data modeling: the BrainTeaser Ontology	8
Assessing resolvability, parsability, and consistency of RDF resources: a use case in rare diseases	7
Semantics in action: a guide for representing clinical data elements with SNOMED CT	7
Semantically enabling clinical decision support recommendations	6
Defining health data elements under the HL7 development framework for metadata management	5
Concretizing plan specifications as realizables within the OBO foundry	5
Standardizing free-text data exemplified by two fields from the Immune Epitope Database	5

Development and validation of the early warning system scores ontology