Journal of Biomedical Semantics

Papers
(The TQCC of Journal of Biomedical Semantics is 5. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-11-01 to 2025-11-01.)
ArticleCitations
Extending electronic medical records vector models with knowledge graphs to improve hospitalization prediction45
Comparing generative and extractive approaches to information extraction from abstracts describing randomized clinical trials26
PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature24
Improving reusability along the data life cycle: a regulatory circuits case study22
Mapping between clinical and preclinical terminologies: eTRANSAFE’s Rosetta stone approach20
Semantic classification of Indonesian consumer health questions20
Gene expression knowledge graph for patient representation and diabetes prediction19
An annotated dataset for extracting gene-melanoma relations from scientific literature18
Explanatory argumentation in natural language for correct and incorrect medical diagnoses18
New and revised gene ontology biological process terms describe multiorganism interactions critical for understanding microbial pathogenesis and sequences of concern17
Features of a FAIR vocabulary15
Enriching the FIDEO ontology with food-drug interactions from online knowledge sources14
BioBLP: a modular framework for learning on multimodal biomedical knowledge graphs12
MedLexSp – a medical lexicon for Spanish medical natural language processing11
The CLEAR Principle: organizing data and metadata into semantically meaningful types of FAIR Digital Objects to increase their human explorability and cognitive interoperability11
Assessing resolvability, parsability, and consistency of RDF resources: a use case in rare diseases9
Multi-task transfer learning for the prediction of entity modifiers in clinical text: application to opioid use disorder case detection9
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data9
Semantics in action: a guide for representing clinical data elements with SNOMED CT8
Residual refinement for interactive skin lesion segmentation8
Semantically enabling clinical decision support recommendations6
Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis6
Development and validation of the early warning system scores ontology5
Automatic transparency evaluation for open knowledge extraction systems5
An extensible and unifying approach to retrospective clinical data modeling: the BrainTeaser Ontology5
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