OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Biomedical Semantics is 5. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-12-01 to 2025-12-01.)

Article	Citations
Comparing generative and extractive approaches to information extraction from abstracts describing randomized clinical trials	47
PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature	28
Extending electronic medical records vector models with knowledge graphs to improve hospitalization prediction	27
Improving reusability along the data life cycle: a regulatory circuits case study	26
Mapping between clinical and preclinical terminologies: eTRANSAFE’s Rosetta stone approach	20
Semantic classification of Indonesian consumer health questions	20
An annotated dataset for extracting gene-melanoma relations from scientific literature	20
Gene expression knowledge graph for patient representation and diabetes prediction	18
Explanatory argumentation in natural language for correct and incorrect medical diagnoses	18
New and revised gene ontology biological process terms describe multiorganism interactions critical for understanding microbial pathogenesis and sequences of concern	18
Enriching the FIDEO ontology with food-drug interactions from online knowledge sources	16
The CLEAR Principle: organizing data and metadata into semantically meaningful types of FAIR Digital Objects to increase their human explorability and cognitive interoperability	13
Features of a FAIR vocabulary	11
BioBLP: a modular framework for learning on multimodal biomedical knowledge graphs	11
MedLexSp – a medical lexicon for Spanish medical natural language processing	10
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data	9
Multi-task transfer learning for the prediction of entity modifiers in clinical text: application to opioid use disorder case detection	9
Residual refinement for interactive skin lesion segmentation	8
Semantics in action: a guide for representing clinical data elements with SNOMED CT	8
Semantically enabling clinical decision support recommendations	6
Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis	6
An extensible and unifying approach to retrospective clinical data modeling: the BrainTeaser Ontology	6
Assessing resolvability, parsability, and consistency of RDF resources: a use case in rare diseases	5
Automatic transparency evaluation for open knowledge extraction systems	5
Development and validation of the early warning system scores ontology	5

Concretizing plan specifications as realizables within the OBO foundry