OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Biomedical Semantics is 6. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-05-01 to 2024-05-01.)

Article	Citations
Natural language processing algorithms for mapping clinical text fragments onto ontology concepts: a systematic review and recommendations for future studies	39
The Infectious Disease Ontology in the age of COVID-19	31
An integrative knowledge graph for rare diseases, derived from the Genetic and Rare Diseases Information Center (GARD)	27
Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic	21
Why and how to engage expert stakeholders in ontology development: insights from social and behavioural sciences	13
Multimodal temporal-clinical note network for mortality prediction	12
Structure-based knowledge acquisition from electronic lab notebooks for research data provenance documentation	12
A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology	10
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data	10
An ontology-based approach for developing a harmonised data-validation tool for European cancer registration	10
Ontological representation, classification and data-driven computing of phenotypes	9
CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature	9
End-to-End provenance representation for the understandability and reproducibility of scientific experiments using a semantic approach	8
Assisting nurses in care documentation: from automated sentence classification to coherent document structures with subject headings	8
Prefrontal fNIRS-based clinical data analysis of brain functions in individuals abusing different types of drugs	8
The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond	7
De-identifying Spanish medical texts - named entity recognition applied to radiology reports	6
Pathling: analytics on FHIR	6
CAS: corpus of clinical cases in French	6
IrGO: Iranian traditional medicine General Ontology and knowledge base	6
Linking common human diseases to their phenotypes; development of a resource for human phenomics	6
Improved characterisation of clinical text through ontology-based vocabulary expansion	6