Journal of Biomedical Semantics

Papers
(The TQCC of Journal of Biomedical Semantics is 5. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-05-01 to 2026-05-01.)
ArticleCitations
PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature39
Representing dental restoration materials in the oral health and disease ontology35
ClarID: a human-readable and compact identifier specification for biomedical metadata integration25
Comparing generative and extractive approaches to information extraction from abstracts describing randomized clinical trials24
Semantic classification of Indonesian consumer health questions24
Mapping between clinical and preclinical terminologies: eTRANSAFE’s Rosetta stone approach23
Gene expression knowledge graph for patient representation and diabetes prediction20
Explanatory argumentation in natural language for correct and incorrect medical diagnoses18
BioBLP: a modular framework for learning on multimodal biomedical knowledge graphs13
The CLEAR Principle: organizing data and metadata into semantically meaningful types of FAIR Digital Objects to increase their human explorability and cognitive interoperability12
New and revised gene ontology biological process terms describe multiorganism interactions critical for understanding microbial pathogenesis and sequences of concern12
Features of a FAIR vocabulary12
Enriching the FIDEO ontology with food-drug interactions from online knowledge sources10
Multi-task transfer learning for the prediction of entity modifiers in clinical text: application to opioid use disorder case detection10
Assessing resolvability, parsability, and consistency of RDF resources: a use case in rare diseases8
MedLexSp – a medical lexicon for Spanish medical natural language processing8
Semantics in action: a guide for representing clinical data elements with SNOMED CT8
Semantically enabling clinical decision support recommendations7
An extensible and unifying approach to retrospective clinical data modeling: the BrainTeaser Ontology6
Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis6
Development and validation of the early warning system scores ontology5
Analysis and implementation of the DynDiff tool when comparing versions of ontology5
Concretizing plan specifications as realizables within the OBO foundry5
MeSH2Matrix: combining MeSH keywords and machine learning for biomedical relation classification based on PubMed5
Automatic transparency evaluation for open knowledge extraction systems5
Classifying literature mentions of biological pathogens as experimentally studied using natural language processing5
Standardizing free-text data exemplified by two fields from the Immune Epitope Database5
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