Microbiologyopen

Article	Citations
Impact of antibiotics on the human microbiome and consequences for host health	173
The incidence of antibiotic resistance within and beyond the agricultural ecosystem: A concern for public health	107
Environmental hotspots for antibiotic resistance genes	57
Microbial interaction between the succinate‐utilizing bacterium Phascolarctobacterium faecium and the gut commensal Bacteroides thetaiotaomicron	53
Raman spectra‐based deep learning: A tool to identify microbial contamination	48
Antimicrobial properties of Lactobacillus cell‐free supernatants against multidrug‐resistant urogenital pathogens	45
Mobile fosfomycin resistance genes in Enterobacteriaceae—An increasing threat	45
Effects of exercise frequency on the gut microbiota in elderly individuals	40
Bactericidal and virucidal activity of ethanol and povidone‐iodine	37
Microbial community and metabolic function analysis of cigar tobacco leaves during fermentation	36
A protocol for recombinant protein quantification by densitometry	32
Microbiota succession during aerobic stability of maize silage inoculated with Lentilactobacillus buchneri NCIMB 40788 and Lentilactobacillus hilgardii CNCM‐I‐4785	31
Vibrios from the Norwegian marine environment: Characterization of associated antibiotic resistance and virulence genes	28
Assessment of microbiota present on a Portuguese historical stone convent using high‐throughput sequencing approaches	25
Genomic insights into a plant growth‐promoting Pseudomonas koreensis strain with cyclic lipopeptide‐mediated antifungal activity	24
An oral health optimized diet reduces the load of potential cariogenic and periodontal bacterial species in the supragingival oral plaque: A randomized controlled pilot study	23
Penicillin‐binding protein PBP2a provides variable levels of protection toward different β‐lactams in Staphylococcus aureus RN4220	22
Impact of host intraspecies genetic variation, diet, and age on bacterial and fungal intestinal microbiota in tigers	21
Novel nitrite reductase domain structure suggests a chimeric denitrification repertoire in the phylum Chloroflexi	20
Captivity affects diversity, abundance, and functional pathways of gut microbiota in the northern grass lizard Takydromus septentrionalis	20
Optimized bacterial DNA isolation method for microbiome analysis of human tissues	19
Plasmodium berghei Gamete Egress Protein is required for fertility of both genders	18
Schiff bases of sulphonamides as a new class of antifungal agent against multidrug‐resistant Candida auris	18
Seasonal variation of viral infections between the eastern honey bee (Apis cerana) and the western honey bee (Apis mellifera)	17
Low‐carbohydrate high‐fat weight reduction diet induces changes in human gut microbiota	17

Metagenomic strategies identify diverse integron‐integrase and antibiotic resistance genes in the Antarctic environment	17
Porcine deltacoronavirus infection alters bacterial communities in the colon and feces of neonatal piglets	17
Development and clinical validation of a droplet digital PCR assay for detecting Acinetobacter baumannii and Klebsiella pneumoniae in patients with suspected bloodstream infections	17
Enrichment of novel Verrucomicrobia, Bacteroidetes, and Krumholzibacteria in an oxygen‐limited methane‐ and iron‐fed bioreactor inoculated with Bothnian Sea sediments	16
Pseudomonas glycinae sp. nov. isolated from the soybean rhizosphere	16
Microbial community overlap between the phyllosphere and rhizosphere of three plants from Yongxing Island, South China Sea	16
Hidden heterogeneity and co‐occurrence networks of soil prokaryotic communities revealed at the scale of individual soil aggregates	16
Marine biofilms on different fouling control coating types reveal differences in microbial community composition and abundance	16
Metagenomic analysis and antimicrobial activity of two fermented milk kefir samples	16
Expression of degQ gene and its effect on lipopeptide production as well as formation of secretory proteases in Bacillus subtilis strains	15
Sustainable production of FAEE biodiesel using the oleaginous yeast Yarrowia lipolytica	15
Pantoea ananatis carotenoid production confers toxoflavin tolerance and is regulated by Hfq‐controlled quorum sensing	15
Comparison of swab types for collection and analysis of microorganisms	15
Detection of methicillin‐resistant Staphylococcus aureus persistence in osteoblasts using imaging flow cytometry	15
Spatially explicit depiction of a floral epiphytic bacterial community reveals role for environmental filtering within petals	14
Characterization of the biocontrol activity of three bacterial isolates against the phytopathogen Erwinia amylovora	14
Nutrient availability in tropical caves influences the dynamics of microbial biomass	14
Shining light on multi‐drug resistant Candida auris: Ultraviolet‐C disinfection, wavelength sensitivity, and prevention of biofilm formation of an emerging yeast pathogen	14
Trophic preferences of the pathogen Ralstonia solanacearum and consequences on its growth in xylem sap	13
Antifungal mechanism of Bacillus amyloliquefaciens strain GKT04 against Fusarium wilt revealed using genomic and transcriptomic analyses	13
Vertical structure of the bacterial diversity in meromictic Fayetteville Green Lake	13
Prevalence of insertion sequence elements in plasmids relating to mgrB gene disruption causing colistin resistance in Klebsiella pneumoniae	13
Isolation and characterization of fast‐growing green snow bacteria from coastal East Antarctica	13
Differences in the intestinal microbiota between insecticide‐resistant and ‐sensitive Aedes albopictus based on full‐length 16S rRNA sequencing	13
Cultivation of the gut bacterium Prevotella copri DSM 18205T using glucose and xylose as carbon sources	13
Combining in vitro and in vivo screening to identify efficient Pseudomonas biocontrol strains against the phytopathogenic bacterium Ralstonia solanacearum	13
Dynamic change of the gastrointestinal bacterial ecology in cows from birth to adulthood	13
Biofilm formation in Acinetobacter baumannii was inhibited by PAβN while it had no association with antibiotic resistance	13
Gut dysbiosis and clinical phases of pancolitis in patients with ulcerative colitis	13
Community diversity metrics, interactions, and metabolic functions of bacteria associated with municipal solid waste landfills at different maturation stages	13
Effect of storage, temperature, and extraction kit on the phylogenetic composition detected in the human milk microbiota	13
Deletion of Rap‐Phr systems in Bacillus subtilis influences in vitro biofilm formation and plant root colonization	12
Living in a bottle: Bacteria from sediment‐associated Mediterranean waste and potential growth on polyethylene terephthalate	12
Hexyl gallate for the control of citrus canker caused by Xanthomonas citri subsp citri	12
Magnesium depletion extends fission yeast lifespan via general amino acid control activation	12
Synthetic pro‐peptide design to enhance the secretion of heterologous proteins by Saccharomyces cerevisiae	12
Insights into the mechanism of cyanobacteria removal by the algicidal fungi Bjerkandera adusta and Trametes versicolor	11
Sporulation: A response to starvation in the fission yeast Schizosaccharomyces pombe	11
Optimization of nitrogen source supply for enhanced biosynthesis and quality of poly(3‐hydroxybutyrate‐co‐3‐hydroxyvalerate) by extremely halophilic archaeon Haloferax mediterranei	11
Drug repurposing: Antimicrobial and antibiofilm effects of penfluridol against Enterococcus faecalis	11
Patterns of the fecal microbiota in the Juan Fernández fur seal (Arctocephalus philippii)	11
Deep tillage combined with biofertilizer following soil fumigation improved chrysanthemum growth by regulating the soil microbiome	11
Diversity and characteristics of culturable endophytic bacteria from Passiflora edulis seeds	11
Metabolic potential of the moderate halophile Yangia sp. ND199 for co‐production of polyhydroxyalkanoates and exopolysaccharides	10
Comparative transcriptome and phenotype analysis revealed the role and mechanism of ompR in the virulence of fish pathogenic Aeromonas hydrophila	10
PasT of Escherichia coli sustains antibiotic tolerance and aerobic respiration as a bacterial homolog of mitochondrial Coq10	10
Bacterioplankton response to nitrogen and dissolved organic matter produced from salmon mucus	10
The genome sequence of hairy root Rhizobium rhizogenes strain LBA9402: Bioinformatics analysis suggests the presence of a new opine system in the agropine Ri plasmid	9
Application of a semi‐automatic, intensive follow‐up for improving efficacy and adherence of Helicobacter pylori eradication therapy: A randomized controlled trial	9
No man's land: Species‐specific formation of exclusion zones bordering Actinomyces graevenitzii microcolonies in nanoliter cultures	9

Recombinant Limosilactobacillus (Lactobacillus) delivering nanobodies against Clostridium perfringens NetB and alpha toxin confers potential protection from necrotic enteritis	9
Machine learning modeling of the effects of media formulated with various yeast extracts on heterologous protein production in Escherichia coli	9
Interaction of two strongly divergent archaellins stabilizes the structure of the Halorubrum archaellum	9
Microbial biominers: Sequential bioleaching and biouptake of metals from electronic scraps	9
Comparative analysis of the intestinal bacterial communities in mud crab Scylla serrata in South India	9
Plants as a realized niche for Listeria monocytogenes	9
The bacterial and fungal community composition in time and space in the nest mounds of the ant Formicaexsecta (Hymenoptera: Formicidae)	9
Pentaplex real‐time PCR for differential detection of Yersinia pestis and Y. pseudotuberculosis and application for testing fleas collected during plague epizootics	9
A low‐cost pipeline for soil microbiome profiling	9
Skin and stinger bacterial communities in two critically endangered rays from the South Atlantic in natural and aquarium settings	9
Phylum‐level diversity of the microbiome of the extremophilic basidiomycete fungus Pisolithus arhizus (Scop.) Rauschert: An island of biodiversity in a thermal soil desert	8
Rapid analytical methods for the microalgal and cyanobacterial biorefinery: Application on strains of industrial importance	8
The in vitro antibacterial effect of permethrin and formaldehyde on Staphylococcus aureus	8
Direct detection of ESKAPEc pathogens from whole blood using the T2Bacteria Panel allows early antimicrobial stewardship intervention in patients with sepsis	8
Cultivable microbiota associated with Aurelia aurita and Mnemiopsis leidyi	8
Associations between phenotypic characteristics and clinical parameters of broilers and intestinal microbial development throughout a production cycle: A field study	8
In vitro reconstitution and characterization of pyruvate dehydrogenase and 2‐oxoglutarate dehydrogenase hybrid complex from Corynebacterium glutamicum	8
Long‐term stability of microbiome diversity and composition in fecal samples stored in eNAT medium	8
The effect of sulfamonomethoxine treatment on the gut microbiota of Nile tilapia (Oreochromis niloticus)	8
Introduction to the principles and methods underlying the recovery of metagenome‐assembled genomes from metagenomic data	8
Microbial diversity of garden snail mucus	8
Characterization of promoters in archaeal genomes based on DNA structural parameters	8
In vivo and in silico screening for antimicrobial compounds from cyanobacteria	8
Small noncoding RNA sRNA0426 is involved in regulating biofilm formation in Streptococcus mutans	8
Regulation of cid and lrg expression by CodY in Streptococcus mutans	7
Bacterial‐like nitric oxide synthase in the haloalkaliphilic archaeon Natronomonas pharaonis	7
DNA extraction bias is more pronounced for microbial eukaryotes than for prokaryotes	7
The effect of calcium palmitate on bacteria associated with infant gut microbiota	7
Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds	7
Temporal transcriptomes of a marine cyanopodovirus and its Synechococcus host during infection	7
Differential protein expression during growth on model and commercial mixtures of naphthenic acids in Pseudomonas fluorescens Pf‐5	7
The cell cycle of Staphylococcus aureus: An updated review	7
Niche partitioning of bacterial communities along the stratified water column in the Black Sea	7
Enriching captivity conditions with natural elements does not prevent the loss of wild‐like gut microbiota but shapes its compositional variation in two small mammals	7
The c‐di‐AMP signaling system influences stress tolerance and biofilm formation of Streptococcus mitis	7
Diagnosis ofHelicobacter pyloriinfection in the elderly using an immunochromatographic assay‐based stool antigen test	7
The cytotoxic synergy between Clostridioides difficile toxin B and proinflammatory cytokines: an unholy alliance favoring the onset of Clostridioides difficile infection and relapses	7
Analysis of the vaginal microbiome of giant pandas using metagenomics sequencing	7
Prevalence and antimicrobial susceptibility of Salmonella in poultry farms and in‐contact humans in Adama and Modjo towns, Ethiopia	7
Multiple plasmid origin‐of‐transfer regions might aid the spread of antimicrobial resistance to human pathogens	7
Nitrite as a causal factor for nitrate‐dependent anaerobic corrosion of metallic iron induced by Prolixibacter strains	6
Early biofilm and streamer formation is mediated by wall shear stress and surface wettability: A multifactorial microfluidic study	6
Deciphering Trifolium pratense L. holobiont reveals a microbiome resilient to future climate changes	6
Isolation of two novel reassortant H3N6 avian influenza viruses from long‐distance migratory birds in Jiangxi Province, China	6
Discrimination of Escherichia coli, Shigella flexneri, and Shigella sonnei using lipid profiling by MALDI‐TOF mass spectrometry paired with machine learning	6
Coaggregation properties of trimeric autotransporter adhesins	6
Whole‐genome sequencing and genome‐scale metabolic modeling of Chromohalobacter canadensis 85B to explore its salt tolerance and biotechnological use	6
Development of a standardized Gram stain procedure for bacteria and inflammatory cells using an automated staining instrument	6
Characterization of the microbiota and chemical properties of pork loins during dry aging	6
Metabolic potential of the imperfect denitrifier Candidatus Desulfobacillus denitrificans in an anammox bioreactor	6
Staphylococcus aureusST228 and ST239 as models for expression studies of diverse markers during osteoblast infection and persistence	6
Effect of the skincare product on facial skin microbial structure and biophysical parameters: A pilot study	6
Impacts of nutrient loading and fish grazing on the phytoplankton community and cyanotoxin production in a shallow tropical lake: Results from mesocosm experiments	6
Characteristics of DNA polymerase I from an extreme thermophile, Thermus scotoductus strain K1	6
Diversity and specificity of the bacterial community in Chinese horse milk cheese	6
Short‐term exposure to synthetic flaxseed lignan LGM2605 alters gut microbiota in mice	6
Metabolic profiling analysis of the vitamin B12 producer Propionibacterium freudenreichii	6
Phylogenetic analysis of Leuconostoc and Lactobacillus species isolated from sugarcane processing streams	6
Patterns of protist distribution and diversification in alpine lakes across Europe	6
Recombinant expression of an l‐amino acid oxidase from the fungus Hebeloma cylindrosporum in Pichia pastoris including fermentation	5
Highly efficient export of a disulfide‐bonded protein to the periplasm and medium by the Tat pathway using CyDisCo in Escherichia coli	5
Detection of Arcobacter species in different intestinal compartments of broiler chicken during slaughter and processing	5
Attachment on mortar surfaces by cyanobacterium Gloeocapsa PCC 73106 and sequestration of CO2 by microbially induced calcium carbonate	5
Deeper below the surface—transcriptional changes in selected genes of Clostridium beijerinckii in response to butanol shock	5
Eating eggplants as a cucurbit feeder: Dietary shifts affect the gut microbiome of the melon fly Zeugodacus cucurbitae (Diptera, Tephritidae)	5
Proteome profiling and vector yield optimization in a recombinant adeno‐associated virus‐producing yeast model	5
Insights into the bacterial community composition of farmed Caulerpa lentillifera: A comparison between contrasting health states	5
Efficacy of antifungal agents against fungal spores: An in vitro study using microplate laser nephelometry and an artificially infected 3D skin model	5
The optimization system for preparation of TG1 competent cells and electrotransformation	5
Tetrachloroethene respiration in Sulfurospirillum species is regulated by a two‐component system as unraveled by comparative genomics, transcriptomics, and regulator binding studies	5
Bovine milk microbiota: Evaluation of different DNA extraction protocols for challenging samples	5
A preliminary examination of the bacterial, archaeal, and fungal rhizosphere microbiome in healthy and Phellinus noxius‐infected trees	5
Age‐associated variation in the gut microbiota of chinstrap penguins (Pygoscelis antarctica) reveals differences in food metabolism	5
Comparison of Actinobacteria communities from human‐impacted and pristine karst caves	5
Distinct microbiota assembly mechanisms revealed in different reconstruction stages during gut regeneration in the sea cucumber Apostichopus japonicus	5
Molecular epidemiology of Candida tropicalis isolated from urogenital tract infections	5
ON‐rep‐seq as a rapid and cost‐effective alternative to whole‐genome sequencing for species‐level identification and strain‐level discrimination of Listeria monocytogenes contamination in a sal	5
Efficacy of Lactiplantibacillus plantarum 299 and 299v against nosocomial oropharyngeal pathogens in vitro and as an oral prophylactic treatment in a randomized, controlled clinical tria	5
Identification of a conserved N‐terminal domain in the first module of ACV synthetases	5
Improved fluorescent Listeria spp. biosensors for analysis of antimicrobials by flow cytometry	5

Large and interacting effects of temperature and nutrient addition on stratified microbial ecosystems in a small, replicated, and liquid‐dominated Winogradsky column approach	5
Deciphering the role of host species for two Mycobacterium bovis genotypes from the European 3 clonal complex circulation within a cattle‐badger‐wild boar multihost system	5
Phylogeography of the marine pathogen, Vibrio vulnificus, revealed the ancestral scenarios of its evolution	5
A parasitic nematode induces dysbiosis in susceptible but not resistant gastropod hosts	4
Clp ATPases differentially affect natural competence development in Streptococcus mutans	4
Complete genome sequence of Photobacterium ganghwense C2.2: A new polyhydroxyalkanoate production candidate	4
Transcriptomic analysis of Streptococcus agalactiae periprosthetic joint infection	4
Antimicrobial resistance profiles of Escherichia coli and prevalence of extended‐spectrum beta‐lactamase‐producing Enterobacteriaceae in calves from organic and conventional dairy farms in Swit	4
Evaluation of two xenobiotic reductases from Pseudomonas putida for their suitability for magnetic nanoparticle‐directed enzyme prodrug therapy as a novel approach to cancer treatment	4
Diversity and composition of the microbiome associated with eggs of the Southern green stinkbug, Nezara viridula (Hemiptera: Pentatomidae)	4
Dynamic changes occur in the DNA gut virome of female cynomolgus macaques during aging	4
Genomics of the “tumorigenes” clade of the family Rhizobiaceae and description of Rhizobium rhododendri sp. nov.	4
Individual Nudix hydrolases affect diverse features of Pseudomonas aeruginosa	4
Downregulation of ammonium uptake improves the growth and tolerance of Kluyveromyces marxianus at high temperature	4
Distribution of microbiota across different intestinal tract segments of a stranded dwarf minke whale, Balaenoptera acutorostrata	4
Analyses of locomotion, wing morphology, and microbiome in Drosophila nigrosparsa after recovery from antibiotics	4
Tunable population dynamics in a synthetic filamentous coculture	4
Identification of acetylated diether lipids in halophilic Archaea	4
Identification and functional characterization of NAD(P)+‐dependent meso‐diaminopimelate dehydrogenase from Numidum massiliense	4
Evaluation of the occurrence of pathogenic free‐living amoeba and bacteria in 20 public indoor swimming pool facilities	4
A comparative study of the fecal microbiota of gray seal pups and yearlings ‐ a marine mammal sentinel species	4
Production of both l‐ and d‐ N‐acyl‐homoserine lactones by Burkholderia cepacia and Vibrio fischeri	4
De novo biosynthesis of α‐aminoadipate via multi‐strategy metabolic engineering in Escherichia coli	4
Gene expression responses to Zika virus infection in peripheral blood mononuclear cells from pregnant and non‐pregnant women	4
Localization of the CotY and ExsY proteins to the exosporium basal layer of Bacillus anthracis	4
Analysis of laccase‐like enzymes secreted by fungi isolated from a cave in northern Spain	3
Efficiency of the synthetic self‐splicing RiboJ ribozyme is robust to cis‐ and trans‐changes in genetic background	3
Identifying the best regimen for primary eradication of Helicobacter pylori: analysis of 240 cases	3
Thirdhand cigarette smoke leads to age‐dependent and persistent alterations in the cecal microbiome of mice	3
Novel multiplex TaqMan assay for differentiation of the four major pathogenic Brachyspira species in swine	3
Inhibition of microbial production of the malodorous substance isovaleric acid by 4,4ʹ dichloro 2‐hydroxydiphenyl ether (DCPP)	3
A Pichia biosensor for high‐throughput analyses of compounds that can influence mosquito behavior	3
Comparison of four extraction methods for the detection of hepatitis B virus DNA in dried blood spot samples	3
Epipelagic microbiome of the Small Aral Sea: Metagenomic structure and ecological diversity	3
Defects in DNA double‐strand break repair resensitize antibiotic‐resistant Escherichia coli to multiple bactericidal antibiotics	3
Molecular characterization of clinical isolates from vascular access infection: A single‐institution study	3
Biological and synthetic surfactant exposure increases antimicrobial gene occurrence in a freshwater mixed microbial biofilm environment	3
Active microbial ecosystem in glacier basal ice fuelled by iron and silicate comminution‐derived hydrogen	3
Microbial approaches for the assessment of toothpaste efficacy against oral species: A method comparison	3
Detection of antimicrobial resistance genes in urban air	3
Primary antibiotic resistance of Helicobacter pylori isolates is twofold more frequent in HIV‐positive than HIV‐negative individuals: A descriptive observational study	3
Polyunsaturated fatty acids cause physiological and behavioral changes in Vibrio alginolyticus and Vibrio fischeri	3
Evaluating models and assessment techniques for understanding oral biofilm complexity	3
Assessing pH‐dependent activities of virulence factors secreted by Candida albicans	3