OOIR: Observatory of International Research

Papers

(The TQCC of Microbiologyopen is 8. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-05-01 to 2024-05-01.)

Article	Citations
Impact of antibiotics on the human microbiome and consequences for host health	185
The incidence of antibiotic resistance within and beyond the agricultural ecosystem: A concern for public health	110
Environmental hotspots for antibiotic resistance genes	58
Microbial interaction between the succinate‐utilizing bacterium Phascolarctobacterium faecium and the gut commensal Bacteroides thetaiotaomicron	54
Raman spectra‐based deep learning: A tool to identify microbial contamination	48
Antimicrobial properties of Lactobacillus cell‐free supernatants against multidrug‐resistant urogenital pathogens	46
Mobile fosfomycin resistance genes in Enterobacteriaceae—An increasing threat	46
Effects of exercise frequency on the gut microbiota in elderly individuals	40
Bactericidal and virucidal activity of ethanol and povidone‐iodine	38
Microbial community and metabolic function analysis of cigar tobacco leaves during fermentation	36
Microbiota succession during aerobic stability of maize silage inoculated with Lentilactobacillus buchneri NCIMB 40788 and Lentilactobacillus hilgardii CNCM‐I‐4785	31
Vibrios from the Norwegian marine environment: Characterization of associated antibiotic resistance and virulence genes	29
An oral health optimized diet reduces the load of potential cariogenic and periodontal bacterial species in the supragingival oral plaque: A randomized controlled pilot study	24
Genomic insights into a plant growth‐promoting Pseudomonas koreensis strain with cyclic lipopeptide‐mediated antifungal activity	24
Penicillin‐binding protein PBP2a provides variable levels of protection toward different β‐lactams in Staphylococcus aureus RN4220	23
Impact of host intraspecies genetic variation, diet, and age on bacterial and fungal intestinal microbiota in tigers	23
Novel nitrite reductase domain structure suggests a chimeric denitrification repertoire in the phylum Chloroflexi	21
Captivity affects diversity, abundance, and functional pathways of gut microbiota in the northern grass lizard Takydromus septentrionalis	20
Optimized bacterial DNA isolation method for microbiome analysis of human tissues	19
Schiff bases of sulphonamides as a new class of antifungal agent against multidrug‐resistant Candida auris	18
Seasonal variation of viral infections between the eastern honey bee (Apis cerana) and the western honey bee (Apis mellifera)	17
Hidden heterogeneity and co‐occurrence networks of soil prokaryotic communities revealed at the scale of individual soil aggregates	17
Metagenomic strategies identify diverse integron‐integrase and antibiotic resistance genes in the Antarctic environment	17
Low‐carbohydrate high‐fat weight reduction diet induces changes in human gut microbiota	17
Development and clinical validation of a droplet digital PCR assay for detecting Acinetobacter baumannii and Klebsiella pneumoniae in patients with suspected bloodstream infections	17

Pantoea ananatis carotenoid production confers toxoflavin tolerance and is regulated by Hfq‐controlled quorum sensing	16
Marine biofilms on different fouling control coating types reveal differences in microbial community composition and abundance	16
Pseudomonas glycinae sp. nov. isolated from the soybean rhizosphere	16
Enrichment of novel Verrucomicrobia, Bacteroidetes, and Krumholzibacteria in an oxygen‐limited methane‐ and iron‐fed bioreactor inoculated with Bothnian Sea sediments	16
Metagenomic analysis and antimicrobial activity of two fermented milk kefir samples	16
Effect of storage, temperature, and extraction kit on the phylogenetic composition detected in the human milk microbiota	15
Characterization of the biocontrol activity of three bacterial isolates against the phytopathogen Erwinia amylovora	15
Expression of degQ gene and its effect on lipopeptide production as well as formation of secretory proteases in Bacillus subtilis strains	15
Comparison of swab types for collection and analysis of microorganisms	15
Antifungal mechanism of Bacillus amyloliquefaciens strain GKT04 against Fusarium wilt revealed using genomic and transcriptomic analyses	14
Nutrient availability in tropical caves influences the dynamics of microbial biomass	14
Spatially explicit depiction of a floral epiphytic bacterial community reveals role for environmental filtering within petals	14
Isolation and characterization of fast‐growing green snow bacteria from coastal East Antarctica	14
Shining light on multi‐drug resistant Candida auris: Ultraviolet‐C disinfection, wavelength sensitivity, and prevention of biofilm formation of an emerging yeast pathogen	14
Prevalence of insertion sequence elements in plasmids relating to mgrB gene disruption causing colistin resistance in Klebsiella pneumoniae	13
Trophic preferences of the pathogen Ralstonia solanacearum and consequences on its growth in xylem sap	13
Differences in the intestinal microbiota between insecticide‐resistant and ‐sensitive Aedes albopictus based on full‐length 16S rRNA sequencing	13
Vertical structure of the bacterial diversity in meromictic Fayetteville Green Lake	13
Dynamic change of the gastrointestinal bacterial ecology in cows from birth to adulthood	13
Magnesium depletion extends fission yeast lifespan via general amino acid control activation	13
Cultivation of the gut bacterium Prevotella copri DSM 18205^T using glucose and xylose as carbon sources	13
Hexyl gallate for the control of citrus canker caused by Xanthomonas citri subsp citri	13
Biofilm formation in Acinetobacter baumannii was inhibited by PAβN while it had no association with antibiotic resistance	13
Gut dysbiosis and clinical phases of pancolitis in patients with ulcerative colitis	13
Community diversity metrics, interactions, and metabolic functions of bacteria associated with municipal solid waste landfills at different maturation stages	13
Combining in vitro and in vivo screening to identify efficient Pseudomonas biocontrol strains against the phytopathogenic bacterium Ralstonia solanacearum	13
Living in a bottle: Bacteria from sediment‐associated Mediterranean waste and potential growth on polyethylene terephthalate	12
Sporulation: A response to starvation in the fission yeast Schizosaccharomyces pombe	12
Deletion of Rap‐Phr systems in Bacillus subtilis influences in vitro biofilm formation and plant root colonization	12
Synthetic pro‐peptide design to enhance the secretion of heterologous proteins by Saccharomyces cerevisiae	12
Drug repurposing: Antimicrobial and antibiofilm effects of penfluridol against Enterococcus faecalis	12
Patterns of the fecal microbiota in the Juan Fernández fur seal (Arctocephalus philippii)	12
Insights into the mechanism of cyanobacteria removal by the algicidal fungi Bjerkandera adusta and Trametes versicolor	11
Diversity and characteristics of culturable endophytic bacteria from Passiflora edulis seeds	11
A low‐cost pipeline for soil microbiome profiling	11
Optimization of nitrogen source supply for enhanced biosynthesis and quality of poly(3‐hydroxybutyrate‐co‐3‐hydroxyvalerate) by extremely halophilic archaeon Haloferax mediterranei	11
Prevalence and antimicrobial susceptibility of Salmonella in poultry farms and in‐contact humans in Adama and Modjo towns, Ethiopia	10
Metabolic potential of the moderate halophile Yangia sp. ND199 for co‐production of polyhydroxyalkanoates and exopolysaccharides	10
Machine learning modeling of the effects of media formulated with various yeast extracts on heterologous protein production in Escherichia coli	10
Bacterioplankton response to nitrogen and dissolved organic matter produced from salmon mucus	10
Introduction to the principles and methods underlying the recovery of metagenome‐assembled genomes from metagenomic data	10
PasT of Escherichia coli sustains antibiotic tolerance and aerobic respiration as a bacterial homolog of mitochondrial Coq10	10
Plants as a realized niche for Listeria monocytogenes	9
The genome sequence of hairy root Rhizobium rhizogenes strain LBA9402: Bioinformatics analysis suggests the presence of a new opine system in the agropine Ri plasmid	9
Microbial biominers: Sequential bioleaching and biouptake of metals from electronic scraps	9
No man's land: Species‐specific formation of exclusion zones bordering Actinomyces graevenitzii microcolonies in nanoliter cultures	9
The cell cycle of Staphylococcus aureus: An updated review	9
Niche partitioning of bacterial communities along the stratified water column in the Black Sea	9
Pentaplex real‐time PCR for differential detection of Yersinia pestis and Y. pseudotuberculosis and application for testing fleas collected during plague epizootics	9
Microbial diversity of garden snail mucus	9

Comparative analysis of the intestinal bacterial communities in mud crab Scylla serrata in South India	9
Recombinant Limosilactobacillus (Lactobacillus) delivering nanobodies against Clostridium perfringens NetB and alpha toxin confers potential protection from necrotic enteritis	9
The bacterial and fungal community composition in time and space in the nest mounds of the ant Formicaexsecta (Hymenoptera: Formicidae)	9
Application of a semi‐automatic, intensive follow‐up for improving efficacy and adherence of Helicobacter pylori eradication therapy: A randomized controlled trial	9
The in vitro antibacterial effect of permethrin and formaldehyde on Staphylococcus aureus	9
Skin and stinger bacterial communities in two critically endangered rays from the South Atlantic in natural and aquarium settings	9
Phylum‐level diversity of the microbiome of the extremophilic basidiomycete fungus Pisolithus arhizus (Scop.) Rauschert: An island of biodiversity in a thermal soil desert	8
Characterization of promoters in archaeal genomes based on DNA structural parameters	8
Cultivable microbiota associated with Aurelia aurita and Mnemiopsis leidyi	8
The effect of sulfamonomethoxine treatment on the gut microbiota of Nile tilapia (Oreochromis niloticus)	8
Associations between phenotypic characteristics and clinical parameters of broilers and intestinal microbial development throughout a production cycle: A field study	8
In vivo and in silico screening for antimicrobial compounds from cyanobacteria	8
In vitro reconstitution and characterization of pyruvate dehydrogenase and 2‐oxoglutarate dehydrogenase hybrid complex from Corynebacterium glutamicum	8
The cytotoxic synergy between Clostridioides difficile toxin B and proinflammatory cytokines: an unholy alliance favoring the onset of Clostridioides difficile infection and relapses	8
Small noncoding RNA sRNA0426 is involved in regulating biofilm formation in Streptococcus mutans	8
Rapid analytical methods for the microalgal and cyanobacterial biorefinery: Application on strains of industrial importance	8
Direct detection of ESKAPEc pathogens from whole blood using the T2Bacteria Panel allows early antimicrobial stewardship intervention in patients with sepsis	8
Long‐term stability of microbiome diversity and composition in fecal samples stored in eNAT medium	8
Differential protein expression during growth on model and commercial mixtures of naphthenic acids in Pseudomonas fluorescens Pf‐5	8