OOIR: Observatory of International Research

Papers

(The H4-Index of GigaScience is 29. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-05-01 to 2025-05-01.)

Article	Citations
Democratizing data-independent acquisition proteomics analysis on public cloud infrastructures via the Galaxy framework	131
Current status of global conservation and characterisation of wild and cultivated Brassicaceae genetic resources	81
DivBrowse—interactive visualization and exploratory data analysis of variant call matrices	74
Hecatomb: an integrated software platform for viral metagenomics	61
The curse and blessing of abundance—the evolution of drug interaction databases and their impact on drug network analysis	61
ntsm: an alignment-free, ultra-low-coverage, sequencing technology agnostic, intraspecies sample comparison tool for sample swap detection	55
Protein–protein and protein–nucleic acid binding site prediction via interpretable hierarchical geometric deep learning	55
The probability of edge existence due to node degree: a baseline for network-based predictions	54
MBGC: Multiple Bacteria Genome Compressor	50
3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources	50
Correction to: Antibiotic resistance genes are differentially mobilized according to resistance mechanism	49
Characteristics and filtering of low-frequency artificial short deletion variations based on nanopore sequencing	42
A streamlined workflow for conversion, peer review, and publication of genomics metadata as omics data papers	42
ricu: R’s interface to intensive care data	41
Preventing dataset shift from breaking machine-learning biomarkers	41
Dual-Alpha: a large EEG study for dual-frequency SSVEP brain–computer interface	40
gNOMO2: a comprehensive and modular pipeline for integrated multi-omics analyses of microbiomes	39
Galaxy as a gateway to bioinformatics: Multi-Interface Galaxy Hands-on Training Suite (MIGHTS) for scRNA-seq	38
The Nencki-Symfonia electroencephalography/event-related potential dataset: Multiple cognitive tasks and resting-state data collected in a sample of healthy adults	36
X-ray microtomography imaging of craniofacial hard tissues in selected reptile species with different types of dentition	33
CoVEffect: interactive system for mining the effects of SARS-CoV-2 mutations and variants based on deep learning	33
scMAPA: Identification of cell-type–specific alternative polyadenylation in complex tissues	32
A decade of GigaScience: A perspective on conservation genetics	31
Cellsnake: a user-friendly tool for single-cell RNA sequencing analysis	30
A high-quality, long-read genome assembly of the endangered ring-tailed lemur (Lemur catta)	30

Internet of Samples (iSamples): Toward an interdisciplinary cyberinfrastructure for material samples	30
FAIR data station for lightweight metadata management and validation of omics studies	30
Hi-GDT: A Hi-C-based 3D gene domain analysis tool for analyzing local chromatin contacts in plants	30
Qiber3D—an open-source software package for the quantitative analysis of networks from 3D image stacks	30
Harnessing population diversity: in search of tools of the trade	29