npj Biofilms and Microbiomes

Papers
(The TQCC of npj Biofilms and Microbiomes is 16. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-09-01 to 2025-09-01.)
ArticleCitations
Gene horizontal transfers and functional diversity negatively correlated with bacterial taxonomic diversity along a nitrogen gradient226
An in vitro fermentation model to study the impact of bacteriophages targeting Shiga toxin-encoding Escherichia coli on the colonic microbiota218
Neutralization of ionic interactions by dextran-based single-chain nanoparticles improves tobramycin diffusion into a mature biofilm131
Pharmacodynamics of interspecies interactions in polymicrobial infections110
Iron limitation-induced endophytic Ammoniphilus assemblage promotes root apoplastic iron remobilization by attenuation of salicylic acid pathways109
Evolution of genotypic and phenotypic diversity in multispecies biofilms107
Targeted metabolomics reveals bioactive inflammatory mediators from gut into blood circulation in children with NAFLD92
In situ monitoring of Lentilactobacillus parabuchneri biofilm formation via real-time infrared spectroscopy89
Lactobacillus plantarum L168 improves hyperoxia-induced pulmonary inflammation and hypoalveolarization in a rat model of bronchopulmonary dysplasia88
Partial convergence of the human vaginal and rectal maternal microbiota in late gestation and early post-partum79
In silico identification of two peptides with antibacterial activity against multidrug-resistant Staphylococcus aureus77
Chinese gut microbiota and its associations with staple food type, ethnicity, and urbanization74
Akkermansia muciniphila inhibited the periodontitis caused by Fusobacterium nucleatum73
Early microbial markers of periodontal and cardiometabolic diseases in ORIGINS63
Dual-functionality of Nocardiopsis alba B57 in biocontrol and plant growth: a metabolomic approach to agricultural sustainability59
Diverse polysaccharide production and biofilm formation abilities of clinical Klebsiella pneumoniae58
One-year supplementation with Lactobacillus reuteri ATCC PTA 6475 counteracts a degradation of gut microbiota in older women with low bone mineral density58
Plasticity of the gut microbiome of golden snub-nosed monkeys (Rhinopithecus roxellana) in response to seasonal variation in diet58
Bacteria contribute exopolysaccharides to an algal-bacterial joint extracellular matrix57
Author Correction: Altered oral and gut microbiota and its association with SARS-CoV-2 viral load in COVID-19 patients during hospitalization55
Fusobacterium nucleatum is enriched in invasive biofilms in colorectal cancer55
The dynamics of microbiome and virome in migratory birds of southwest China53
The gut microbiota modulate locomotion via vagus-dependent glucagon-like peptide-1 signaling53
Native microbiome dominates over host factors in shaping the probiotic genetic evolution in the gut52
Harnessing vaginal inflammation and microbiome: a machine learning model for predicting IVF success52
Diffusion-based mechanism explains spatial organization in cross-feeding biofilms51
Interspecies competition in oral biofilms mediated by Streptococcus gordonii extracellular deoxyribonuclease SsnA51
Ex vivo intestinal permeability assay (X-IPA) for tracking barrier function dynamics49
Simulation of catalase-dependent tolerance of microbial biofilm to hydrogen peroxide with a biofilm computer model49
Colonization with ubiquitous protist Blastocystis ST1 ameliorates DSS-induced colitis and promotes beneficial microbiota and immune outcomes48
Donor-recipient specificity and age-dependency in fecal microbiota therapy and probiotic resolution of gastrointestinal symptoms47
Protecting the piglet gut microbiota against ETEC-mediated post-weaning diarrhoea using specific binding proteins47
Secreted nucleases reclaim extracellular DNA during biofilm development45
The impact of antioxidant-ciprofloxacin combinations on the evolution of antibiotic resistance in Pseudomonas aeruginosa biofilms45
Gut microbes modulate the effects of the flavonoid quercetin on atherosclerosis42
Adaptation of a methanogen to Fe0 corrosion via direct contact42
Social demographics determinants for resistome and microbiome variation of a multiethnic community in Southern Malaysia42
Disentangling the feedback loops driving spatial patterning in microbial communities42
Clostridium difficile-derived membrane vesicles promote fetal growth restriction via inhibiting trophoblast motility through PPARγ/RXRα/ANGPTL4 axis42
Impact of a multi-strain L. crispatus-based vaginal synbiotic on the vaginal microbiome: a randomized placebo-controlled trial41
The skin microbiome stratifies patients with cutaneous T cell lymphoma and determines event-free survival41
Large-scale metagenomic assembly provide new insights into the genetic evolution of gut microbiomes in plateau ungulates41
Host specificity and cophylogeny in the “animal-gut bacteria-phage” tripartite system41
Citizen-science reveals changes in the oral microbiome in Spain through age and lifestyle factors40
Interaction between tissue-dwelling helminth and the gut microbiota drives mucosal immunoregulation40
Rational consideration of Akkermansia muciniphila targeting intestinal health: advantages and challenges40
Adaptation and phenotypic diversification of Bacillus thuringiensis biofilm are accompanied by fuzzy spreader morphotypes39
Integrative metagenomic and metabolomic analyses reveal the potential of gut microbiota to exacerbate acute pancreatitis39
Microbial solutions must be deployed against climate catastrophe38
ToxR is a c-di-GMP binding protein that modulates surface-associated behaviour in Pseudomonas aeruginosa38
The Wsp chemosensory system modulates c-di-GMP-dependent biofilm formation by integrating DSF quorum sensing through the WspR-RpfG complex in Lysobacter37
Tanzanian gut microbiota profiles linked to high but rapidly waning yellow fever antibody titers34
Matrix is everywhere: extracellular DNA is a link between biofilm and mineralization in Bacillus cereus planktonic lifestyle34
Molecular and cellular insight into Escherichia coli SslE and its role during biofilm maturation33
Latent evolution of biofilm formation depends on life-history and genetic background32
Environmental factors drive bacterial degradation of gastrointestinal mucus32
OSaMPle workflow for salivary metaproteomics analysis reveals dysbiosis in inflammatory bowel disease patients32
Thwarting resistance: MgrA inhibition with methylophiopogonanone a unveils a new battlefront against S. aureus32
Selective inhibition of the amyloid matrix of Escherichia coli biofilms by a bifunctional microbial metabolite31
Gut and oral microbiota in gynecological cancers: interaction, mechanism, and therapeutic value31
Gut-resident Phascolarctobacterium succinatutens decreases fat accumulation via MYC-driven epigenetic regulation of arginine biosynthesis31
Genotoxic stress stimulates eDNA release via explosive cell lysis and thereby promotes streamer formation of Burkholderia cenocepacia H111 cultured in a microfluidic device30
Short term supplementation with cranberry extract modulates gut microbiota in human and displays a bifidogenic effect30
Endolysin selectively kills Gardnerella ex vivo in vaginal samples from women with bacterial vaginosis30
Oral and middle ear delivery of otitis media standard of care antibiotics, but not biofilm-targeted antibodies, alter chinchilla nasopharyngeal and fecal microbiomes30
Inflammatory microbes and genes as potential biomarkers of Parkinson’s disease29
Antimicrobial and antibiotic-potentiating effect of calcium peroxide nanoparticles on oral bacterial biofilms29
Coconut rhinoceros beetle digestive symbiosis with potential plant cell wall degrading microbes29
Gut microbiota alterations are linked to COVID-19 severity in North African and European populations28
Microbial mat compositions and localization patterns explain the virulence of black band disease in corals28
Synergistic effects of commensals and phage predation in suppressing colonization by pathogenic Vibrio parahaemolyticus28
Author Correction: Bifidobacterium animalis Probio-M8 improves sarcopenia physical performance by mitigating creatine restrictions imposed by microbial metabolites28
Multi-omics profiling of dairy cattle oxidative stress identifies hindgut-derived Phascolarctobacterium succinatutens exhibiting antioxidant activity28
Atypical cyclic di-AMP signaling is essential for Porphyromonas gingivalis growth and regulation of cell envelope homeostasis and virulence28
Nitrate and a nitrate-reducing Rothia aeria strain as potential prebiotic or synbiotic treatments for periodontitis27
Impact of structurally diverse polysaccharides on colonic mucin O-glycosylation and gut microbiota27
Variation of Antigen 43 self-association modulates bacterial compacting within aggregates and biofilms26
Nisin lantibiotic prevents NAFLD liver steatosis and mitochondrial oxidative stress following periodontal disease by abrogating oral, gut and liver dysbiosis26
Facemask acne attenuation through modulation of indirect microbiome interactions25
The role of gut microbiota-gonadal axis in ovary activation of Asian honey bee (Apis cerana) queens25
Intracellular bacteria in cancer—prospects and debates25
The cell wall lipoprotein CD1687 acts as a DNA binding protein during deoxycholate-induced biofilm formation in Clostridioides difficile25
Cpx-signalling facilitates Hms-dependent biofilm formation by Yersinia pseudotuberculosis25
Antibiotic treatment can exacerbate biofilm-associated infection by promoting quorum cheater development24
Comprehensive insights from composition to functional microbe-based biodiversity of the infant human gut microbiota24
Periodontitis-associated Fusobacterium nucleatum promotes ulcerative colitis by ferroptosis-mediated gut barrier disruption24
Minibioreactor arrays to model microbiome response to alcohol and tryptophan in the context of alcohol-associated liver disease24
Density and temperature controlled fluid extraction in a bacterial biofilm is determined by poly-γ-glutamic acid production24
The Bifidobacterium-dominated fecal microbiome in dairy calves shapes the characteristic growth phenotype of host23
Impact of trace metal supplementation on anaerobic biological methanation under hydrogen and carbon dioxide starvation23
Spinal cord injury-induced gut dysbiosis influences neurological recovery partly through short-chain fatty acids23
Economic significance of biofilms: a multidisciplinary and cross-sectoral challenge23
Immune dysfunction during S. aureus biofilm-associated implant infections: opportunities for novel therapeutic strategies23
The highly differentiated gut of Pachnoda marginata hosts sequential microbiomes: microbial ecology and potential applications22
Inulin-enriched Megamonas funiformis ameliorates metabolic dysfunction-associated fatty liver disease by producing propionic acid22
Hypertension inhibition by Dubosiella newyorkensis via reducing pentosidine synthesis22
Temporal turnover of viral biodiversity and functional potential in intertidal wetlands22
Intermittent fasting modulates the intestinal microbiota and improves obesity and host energy metabolism22
Preventing bacterial adhesion to skin by altering their physicochemical cell surface properties specifically21
The primate gut mycobiome-bacteriome interface is impacted by environmental and subsistence factors21
Hydrodynamic conditions affect the proteomic profile of marine biofilms formed by filamentous cyanobacterium21
Mitochondrial dysfunction promotes microbial composition that negatively impacts on ulcerative colitis development and progression20
Deep generative modeling of annotated bacterial biofilm images20
Time-resolved compositional and dynamics analysis of biofilm maturation and dispersal via solid-state NMR spectroscopy20
Recent advances in single-cell engineered live biotherapeutic products research for skin repair and disease treatment20
Staphylococcus aureus utilizes environmental RNA as a building material in specific polysaccharide-dependent biofilms20
Mesaconic acid as a key metabolite with anti-inflammatory and anti-aging properties produced by Lactobacillus plantarum 124 from centenarian gut microbiota20
Long-chain 4-aminoquinolines inhibit filamentation and increase efficacy of nystatin against Candida albicans infections in vivo20
The tongue biofilm metatranscriptome identifies metabolic pathways associated with the presence or absence of halitosis20
Community successional patterns and inter-kingdom interactions during granular biofilm development20
Body weight index indicates the responses of the fecal microbiota, metabolome and proteome to beef/chicken-based diet alterations in Chinese volunteers20
Synthetic periphyton as a model system to understand species dynamics in complex microbial freshwater communities19
Gut microbiome responses to dietary intervention with hypocholesterolemic vegetable oils19
Staphylococcus epidermidis alters macrophage polarization and phagocytic uptake by extracellular DNA release in vitro19
Non disseminative nano-strategy against in vivo Staphylococcus aureus biofilms19
Spaceflight alters host-gut microbiota interactions19
Environmental determinants and demographic influences on global urban microbiomes, antimicrobial resistance and pathogenicity19
Genomic evidence for flies as carriers of zoonotic pathogens on dairy farms19
Ecological change of the gut microbiota during pregnancy and progression to dyslipidemia19
Irrigation of the intramedullary channel improves outcome of DAIR in a sheep model18
Gut microbiota-mediated secondary bile acid alleviates Staphylococcus aureus-induced mastitis through the TGR5-cAMP-PKA-NF-κB/NLRP3 pathways in mice18
Publisher Correction: Integrating respiratory microbiome and host immune response through machine learning for respiratory tract infection diagnosis18
Bacterial c-di-GMP triggers metamorphosis of mussel larvae through a STING receptor18
Metagenomic analysis reveals the novel role of vaginal Lactobacillus iners in Chinese healthy pregnant women18
Alginate exopolymer significantly modulates the viscoelastic properties and resilience of bacterial biofilms18
The car tank lid bacteriome: a reservoir of bacteria with potential in bioremediation of fuel18
Temporal dynamics of oropharyngeal microbiome among SARS-CoV-2 patients reveals continued dysbiosis even after Viral Clearance18
Periodontitis salivary microbiota exacerbates colitis-induced anxiety-like behavior via gut microbiota18
Polybacterial intracellular macromolecules shape single-cell inflammatory profiles in upper airway epithelia17
Parabacteroides as a promising target for disease intervention: current stage and pending issues17
The salivary microbiome shows a high prevalence of core bacterial members yet variability across human populations17
On validly published names, correct names, and changes in the nomenclature of phyla and genera of prokaryotes: a guide for the perplexed17
Author Correction: Bacterial biofilm-derived H-NS protein acts as a defense against Neutrophil Extracellular Traps (NETs)17
Infant gut microbiota and SCFAs mediate the association between early-life human milk microbiota and neurodevelopment17
(p)ppGpp imposes graded transcriptional changes to impair motility and promote antibiotic tolerance in biofilms17
Host-microbiome relationship in depression: can human induced pluripotent stem cells play a role in unravelling mechanisms?17
Bacterial capsules: Occurrence, mechanism, and function17
In-depth insights into cervicovaginal microbial communities and hrHPV infections using high-resolution microbiome profiling17
Soft X-ray tomography reveals variations in B. subtilis biofilm structure upon tasA deletion17
Temporal dynamics, microdiversity, and ecological functions of viral communities during cyanobacterial blooms in Lake Taihu17
Extracellular vesicles of the Gram-positive gut symbiont Bifidobacterium longum induce immune-modulatory, anti-inflammatory effects17
PreLect: Prevalence leveraged consistent feature selection decodes microbial signatures across cohorts16
Geocaulosphere soil bacterial community drives potato common scab outcomes beyond pathogen abundance16
Gut microbiota and SCFAs improve the treatment efficacy of chemotherapy and immunotherapy in NSCLC16
Bifidobacterium longum NSP001-derived extracellular vesicles ameliorate ulcerative colitis by modulating T cell responses in gut microbiota-(in)dependent manners16
Gender differences in global antimicrobial resistance16
Akkermansia muciniphila in the small intestine improves liver fibrosis in a murine liver cirrhosis model16
Topical prebiotic nitrate: optimizing the ‘hang-time’, source and dose for specific oral or systemic effects16
Vaginal pharmacomicrobiomics modulates risk of persistent and recurrent bacterial vaginosis16
Microbiome modulation of implant-related infection by a novel miniaturized pulsed electromagnetic field device16
Carbohydrates from Pseudomonas aeruginosa biofilms interact with immune C-type lectins and interfere with their receptor function16
Microbial melatonin metabolism in the human intestine as a therapeutic target for dysbiosis and rhythm disorders16
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