OOIR: Observatory of International Research

Papers

(The H4-Index of npj Systems Biology and Applications is 19. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-04-01 to 2025-04-01.)

Article	Citations
Loss formulations for assumption-free neural inference of SDE coefficient functions	68
Designing function-specific minimal microbiomes from large microbial communities	59
A possible path to persistent re-entry waves at the outlet of the left pulmonary vein	48
Large-scale computational modelling of the M1 and M2 synovial macrophages in rheumatoid arthritis	39
Leveraging public AI tools to explore systems biology resources in mathematical modeling	38
Modeling critical dosing strategies for stromal-induced resistance to cancer therapy	38
Optimization of nutrient utilization efficiency and productivity for algal cultures under light and dark cycles using genome-scale model process control	35
Transformer-based modeling of Clonal Selection and Expression Dynamics reveals resistance mechanisms in breast cancer	33
Deterministic patterns in single-cell transcriptomic data	32
MorphoSim: an efficient and scalable phase-field framework for accurately simulating multicellular morphologies	30
Transcriptome analysis of clock disrupted cancer cells reveals differential alternative splicing of cancer hallmarks genes	26
Sunset Yellow protects against oxidative damage and exhibits chemoprevention in chemically induced skin cancer model	26
gDesigner: computational design of synthetic gRNAs for Cas12a-based transcriptional repression in mammalian cells	25
Effective dose window for containing tumor burden under tolerable level	24
Executable models of immune signaling pathways in HIV-associated atherosclerosis	23
Knowledge-based mechanistic modeling accurately predicts disease progression with gefitinib in EGFR-mutant lung adenocarcinoma	21
Functional stratification of cancer drugs through integrated network similarity	21
Severe testing with high-dimensional omics data for enhancing biomedical scientific discovery	20
Measuring criticality in control of complex biological networks	20
Transomics2cytoscape: an automated software for interpretable 2.5-dimensional visualization of trans-omic networks	19
Identification of Probucol as a candidate for combination therapy with Metformin for Type 2 diabetes	19